Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006376

Physical Location & Seq

Genomic Coordinates Reverse (-)

3106732 .. 3107381

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1025000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTGGTTAGGGTTATGTGCAGTGGCGGATCCACAGTGGGGTCATTGGGGTCGCGCGACCCCTTGGAAGCCATGGAAGCAACCTTAGAGACCCCTTGGACTGGTGGTGCGACCCCTGGTGCGACCCCGTTCGCTGCACACCAACTGTTCGACGAAAGGTCGTCGGTCTGGGCAGATGTAGAGCTGGAATGTAGGATTTTGAACAAGGATTTTGGAGTAGCTGGTCGCGCTATCCTACCAAGACCCGATGAAATGACGATATGCATGCCGTTTCTGTTAAAAAAAATTTCGCGCTGCGCGCGCTATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.2

Weight (kDa)

5.76

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53770
fragaria_vesca	FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190
malus_domestica	MD01G1239400.v1.1 MD03G1226500.v1.1 MD05G1272800.v1.1 MD08G1067800.v1.1 MD10G1025000.v1.1 MD11G1244500.v1.1 MD11G1244600.v1.1
prunus_persica	Prupe.4G182900_v2.0.a1
pyrus_communis	pycom03g17420
rosa_chinensis	RchiOBHm_Chr5g0034001
rosa_laevigata	RLG00000033518
rosa_multiflora	Rmu_sc0012341.1_g000005 Rmu_sc0014753.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046230
rosa_rugosa	Rorug05G0144100
rosa_samantha	Rh5AG235000 Rh5BG235800 Rh5CG265600 Rh5DG242200
rosa_wichuraiana	Rw5G021220 Rw5G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	55, 57, 228, 292, 299, 301
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	24, 37
AcsI	RAATTY	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	39, 101
AgsI	TTSAA	1 cut(s)	202
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	184, 221
AluI	AGCT	2 cut(s)	184, 221
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	24, 37
ApeKI	GCWGC	2 cut(s)	134, 294
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	6 cut(s)	57, 230, 294, 299, 301, 303
BamHI	GGATCC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	121, 281
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	135, 295
BlsI	GCNGC	2 cut(s)	136, 296
Bme1390I	CCNGG	1 cut(s)	117
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	4 cut(s)	63, 72, 95, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 101
Bse1I	ACTGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	4 cut(s)	63, 72, 95, 115
BseLI	CCNNNNNNNGG	2 cut(s)	39, 101
BseNI	ACTGG	1 cut(s)	106
BsePI	GCGCGC	2 cut(s)	297, 299
BseXI	GCAGC	2 cut(s)	121, 281
BsgI	GTGCAG	2 cut(s)	40, 120
Bsh1236I	CGCG	6 cut(s)	55, 57, 228, 292, 299, 301
BslI	CCNNNNNNNGG	2 cut(s)	39, 101
BsmAI	GTCTC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	29
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	27
BspFNI	CGCG	6 cut(s)	55, 57, 228, 292, 299, 301
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	24, 37
BspTNI	GGTCTC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	4 cut(s)	63, 72, 95, 115
BssHII	GCGCGC	2 cut(s)	297, 299
BssMI	GATC	1 cut(s)	29
BssT1I	CCWWGG	3 cut(s)	63, 72, 95
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	37, 147
BstC8I	GCNNGC	3 cut(s)	266, 299, 301
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	72
BstFNI	CGCG	6 cut(s)	55, 57, 228, 292, 299, 301
BstHHI	GCGC	6 cut(s)	57, 230, 294, 299, 301, 303
BstKTI	GATC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 227, 298, 300
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	115
BstUI	CGCG	6 cut(s)	55, 57, 228, 292, 299, 301
BstV1I	GCAGC	2 cut(s)	121, 281
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 42
Cac8I	GCNNGC	3 cut(s)	266, 299, 301
CfoI	GCGC	6 cut(s)	57, 230, 294, 299, 301, 303
CviAII	CATG	2 cut(s)	73, 265
CviJI	RGCY	3 cut(s)	71, 184, 221
CviKI_1	RGCY	3 cut(s)	71, 184, 221
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	3 cut(s)	63, 72, 95
Eco31I	GGTCTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	3 cut(s)	63, 72, 95
EcoT22I	ATGCAT	1 cut(s)	266
ErhI	CCWWGG	3 cut(s)	63, 72, 95
FaeI	CATG	2 cut(s)	76, 268
FaiI	YATR	4 cut(s)	17, 74, 262, 266
FatI	CATG	2 cut(s)	72, 264
Fnu4HI	GCNGC	2 cut(s)	135, 295
Fsp4HI	GCNGC	2 cut(s)	135, 295
GlaI	GCGC	6 cut(s)	56, 229, 293, 298, 300, 302
GluI	GCNGC	2 cut(s)	135, 295
HhaI	GCGC	6 cut(s)	57, 230, 294, 299, 301, 303
Hin1II	CATG	2 cut(s)	76, 268
Hin6I	GCGC	6 cut(s)	55, 228, 292, 297, 299, 301
HinP1I	GCGC	6 cut(s)	55, 228, 292, 297, 299, 301
Hpy99I	CGWCG	2 cut(s)	155, 166
HpyCH4III	ACNGT	2 cut(s)	37, 147
HpyCH4V	TGCA	3 cut(s)	21, 137, 264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 227, 298, 300
HpyF3I	CTNAG	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	76, 268
HspAI	GCGC	6 cut(s)	55, 228, 292, 297, 299, 301
Kzo9I	GATC	1 cut(s)	29
LpnPI	CCDG	6 cut(s)	87, 102, 129, 154, 170, 207
Lsp1109I	GCAGC	2 cut(s)	121, 281
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	266
MseI	TTAA	2 cut(s)	278, 310
MspR9I	CCNGG	1 cut(s)	117
MteI	GCGCNGCGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	6 cut(s)	55, 57, 228, 292, 299, 301
MwoI	GCNNNNNNNGC	4 cut(s)	77, 227, 298, 300
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	76, 268
NlaIV	GGNNCC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	1 cut(s)	268
PaeI	GCATGC	1 cut(s)	268
PauI	GCGCGC	2 cut(s)	297, 299
PkrI	GCNGC	2 cut(s)	136, 296
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	29
PteI	GCGCGC	2 cut(s)	297, 299
SaqAI	TTAA	2 cut(s)	278, 310
SatI	GCNGC	2 cut(s)	135, 295
Sau3AI	GATC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	4 cut(s)	86, 161, 186, 223
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	3 cut(s)	63, 72, 95
TaaI	ACNGT	2 cut(s)	37, 147
TaqI	TCGA	1 cut(s)	150
TaqII	GACCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	278, 310
Tru9I	TTAA	2 cut(s)	278, 310
TscAI	CASTG	2 cut(s)	28, 42
TseI	GCWGC	2 cut(s)	134, 294
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	28, 42
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.