Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006376

Physical Location & Seq

Genomic Coordinates Forward (+)

5398278 .. 5399331

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1067800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGGGTCACACGACCCCTTGGAAGCCATGGAAACTACCTTAGAGACCCCTTGGAGATGGTGGAACGACCCCTTGGAGCTGACTGGTGCGACCCCTTGGCTGCACACCAACTGTTCGACGAAAGGCTCCTCAGCGGCTGGGCAAAACGAAGACGAAGGAGAAGGCGCTGTGCGCCTGTTTTTTTTTAAAAGCAACCTGGGCAAAACGAGTGCAGTGTTCTGGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4371 Dimer_Tnp_hAT

Protein Analysis

77

Amino Acids

8.51

Weight (kDa)

4.71

Isoelectric Point (pI)

12.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53770
fragaria_vesca	FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190
malus_domestica	MD01G1239400.v1.1 MD03G1226500.v1.1 MD05G1272800.v1.1 MD08G1067800.v1.1 MD10G1025000.v1.1 MD11G1244500.v1.1 MD11G1244600.v1.1
prunus_persica	Prupe.4G182900_v2.0.a1
pyrus_communis	pycom03g17420
rosa_chinensis	RchiOBHm_Chr5g0034001
rosa_laevigata	RLG00000033518
rosa_multiflora	Rmu_sc0012341.1_g000005 Rmu_sc0014753.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046230
rosa_rugosa	Rorug05G0144100
rosa_samantha	Rh5AG235000 Rh5BG235800 Rh5CG265600 Rh5DG242200
rosa_wichuraiana	Rw5G021220 Rw5G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	223
AspLEI	GCGC	2 cut(s)	167, 174
BbsI	GAAGAC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	2 cut(s)	101, 135
BlsI	GCNGC	2 cut(s)	102, 136
Bme1390I	CCNGG	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	6 cut(s)	18, 27, 50, 72, 95, 196
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	6 cut(s)	18, 27, 50, 72, 95, 196
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	137
BsgI	GTGCAG	2 cut(s)	86, 231
BsmAI	GTCTC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	6 cut(s)	18, 27, 50, 72, 95, 196
BssT1I	CCWWGG	5 cut(s)	18, 27, 50, 72, 95
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	40, 130
BstDSI	CCRYGG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 174
BstMAI	GTCTC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 198
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	2 cut(s)	167, 174
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	5 cut(s)	26, 79, 100, 126, 137
CviKI_1	RGCY	5 cut(s)	26, 79, 100, 126, 137
DdeI	CTNAG	2 cut(s)	40, 130
DraI	TTTAAA	1 cut(s)	187
Eco130I	CCWWGG	5 cut(s)	18, 27, 50, 72, 95
Eco31I	GGTCTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	5 cut(s)	18, 27, 50, 72, 95
ErhI	CCWWGG	5 cut(s)	18, 27, 50, 72, 95
FaeI	CATG	1 cut(s)	31
FaiI	YATR	1 cut(s)	29
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	101, 135
Fsp4HI	GCNGC	2 cut(s)	101, 135
GlaI	GCGC	2 cut(s)	166, 173
GluI	GCNGC	2 cut(s)	101, 135
GsaI	CCCAGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	168
HhaI	GCGC	2 cut(s)	167, 174
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	2 cut(s)	165, 172
HinP1I	GCGC	2 cut(s)	165, 172
Hpy188III	TCNNGA	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	149, 155
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	103, 212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 198
HpyF3I	CTNAG	2 cut(s)	40, 130
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	2 cut(s)	165, 172
LmnI	GCTCC	2 cut(s)	76, 131
LpnPI	CCDG	6 cut(s)	69, 123, 182, 188, 205, 209
Lsp1109I	GCAGC	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	161
MluCI	AATT	1 cut(s)	223
MnlI	CCTC	1 cut(s)	139
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	171, 198
NcoI	CCATGG	1 cut(s)	27
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	102, 136
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	101, 135
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	3 cut(s)	41, 81, 198
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	5 cut(s)	18, 27, 50, 72, 95
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	223
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	6
TspRI	CASTG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.