Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006376

Physical Location & Seq

Genomic Coordinates Reverse (-)

28457653 .. 28462343

Gene Structure 4691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG235000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGAGCAGGCTCCTGAGACCCCCCAAAGGATTCTCTACGAAACCCTATGCCCTCTCTCTCTTTCCACCCCGGACCAATCTCCGCCGCCGTCCGATCACCTGGAACCCTACTTCGTTTTCCGCAACGAGATCTCTATCTCCTCTCTCCGCTCCACTTCGGCGGACACCGCCGCGCCCAACTTCATCTCCCTTGACGTTGCCGCCGATGAAGCCGAGCCGAAATCGGCCTGGGAATCTCCGGCAGCCGAGCCAAAGACTCCGGTTCCGGAGCCGAAGCTCGAGAGCGGATGGTTTCGCGGCCGCAGTAAATTCAAGAGCCCTATGCTTCAGCTCCATAAAGAGATTCTGGACTTTTGTGAGTTTCTCTCTCCGACTCCACAGGAGGAAGAGGCACGGAGGACAGCAGTAGAACGTGTTTCTGAGGTTATCAAATATATATGGCCTCGATGCGGGGTTGAAGTTTTTGGGTCATTCAAGACGGGGCTGTATCTTCCTGCTAGTGATATTGATGTCGTCATTATGCGGTCTGGTATTCCAACCCCACAACAAGGGTTGTATGCACTTTCTAGGGCATTGTCACAAATGGGATTGGCAAAAAGGATACAGGTGATTGCCAAGGCTCGTGTACCTATTATTAAATTTGAAGAAAAAACAAGTGGTATCGCCTTTGACATAAGTTTTGATATAGACAGTGGACCAAAAGCTGCTGAATTTATCAAGGATGCAATATCTAAGTGGCCTCCTTTGCGGCCGTTGTGTTTAATTTTGAAAATATTTTTACAACAGAGAGAATTGAATGAGGTATACTCTGGTGGATTAGGTTCTTATGCCCTCCTTGCAATGCTAATTGCAATGCTGCAGAGCCTCAGGGAAAGCCAAGCTTCTCCAGAGCAAAATTTGGGAGTTCTTTTGGTAAACTTCTTTGATTTTTACGGGCGCAAACTGAACACTTCAGATGTTGGTGTGTCTTGCAAAGGGACAGGCACTTTTTTCTCAAAGAATAGCAAAGGGTTCACAAATAAAGGACGGCCATTTCTTATTGCAATCGAGGACCCACAGGCACCAGAGAATGATGTTGGGAAGAACTCTTTTAACTATTTTCAGATTAAATCAGCATTTGCAATGGCTTATACTACATTGACAAATCCTAAGAACATTATGTCCCTGGGCCCAAATAGGAGCATTCTTGGTACCATAATTAGACCGGATGCAACATTGGCGGAACGAAAAGGAGGGCCTGGTCAGGTGACTTTAGATAGCTTGCTTCCAGGAGCAGGGGAGCCACTTCGGCCAGAGTCTGAGCAGCAAGAATTTTTATGCAATTGGCAGTATGATGACGACGATCCCCTGCCACGGGGAGGTGACTTTGTTGGAGATGTGAACGGGGAATCATCATCTGGAAAGAAGAGGAAATCTCCGTTTAAAGATAAGTCTAAATCATCAGGTAAAAAGGGAAAAAAGATAAAGGCTGAAGAAAATGACTCGAGAAAAAAAGAGAAGGCATCCATGAAGAAGGAACGGAGACAAAAACGGAAACAATCCCGGGAGAGTCTCAATGGATATGGTGCTTATGTTGGAGGGTCTCCTTGGAGTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008334 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0010639 GO:0016070 GO:0016071 GO:0016074 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0019439 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033500 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042592 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045934 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0065008 GO:0070566 GO:0071044 GO:0071050 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

532

Amino Acids

58.94

Weight (kDa)

8.92

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	111 - 235	9.5e-24	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
NTP_transf_2	PF01909	137 - 232	2e-07	Nucleotidyltransferase domain
PAP_assoc	PF03828	299 - 357	3.2e-16	Cid1 family poly A polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53770
fragaria_vesca	FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190
malus_domestica	MD01G1239400.v1.1 MD03G1226500.v1.1 MD05G1272800.v1.1 MD08G1067800.v1.1 MD10G1025000.v1.1 MD11G1244500.v1.1 MD11G1244600.v1.1
prunus_persica	Prupe.4G182900_v2.0.a1
pyrus_communis	pycom03g17420
rosa_chinensis	RchiOBHm_Chr5g0034001
rosa_laevigata	RLG00000033518
rosa_multiflora	Rmu_sc0012341.1_g000005 Rmu_sc0014753.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046230
rosa_rugosa	Rorug05G0144100
rosa_samantha	Rh5AG235000 Rh5BG235800 Rh5CG265600 Rh5DG242200
rosa_wichuraiana	Rw5G021220 Rw5G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1190
AccB1I	GGYRCC	2 cut(s)	1060, 1190
AccBSI	CCGCTC	2 cut(s)	150, 285
AccI	GTMKAC	1 cut(s)	804
AccII	CGCG	2 cut(s)	173, 297
AccIII	TCCGGA	1 cut(s)	265
AclWI	GGATC	1 cut(s)	1337
AcoI	YGGCCR	4 cut(s)	298, 749, 1028, 1289
AcsI	RAATTY	5 cut(s)	308, 638, 710, 895, 1310
AcuI	CTGAAG	3 cut(s)	311, 936, 1491
AfaI	GTAC	2 cut(s)	627, 1192
AfiI	CCNNNNNNNGG	7 cut(s)	27, 449, 548, 1274, 1353, 1354, 1358
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	6 cut(s)	313, 458, 475, 644, 769, 796
AjnI	CCWGG	5 cut(s)	99, 227, 1164, 1237, 1267
AloI	GAACNNNNNNTCC	2 cut(s)	1145, 1177
AluBI	AGCT	5 cut(s)	277, 331, 704, 881, 1260
AluI	AGCT	5 cut(s)	277, 331, 704, 881, 1260
Alw26I	GTCTC	4 cut(s)	11, 1516, 1556, 1587
AlwI	GGATC	1 cut(s)	1337
AlwNI	CAGNNNCTG	1 cut(s)	1298
Ama87I	CYCGRG	3 cut(s)	278, 1483, 1542
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	9 cut(s)	225, 298, 440, 737, 749, 1028, 1168, 1235, 1289
ApaI	GGGCCC	1 cut(s)	1172
ApeKI	GCWGC	4 cut(s)	242, 704, 856, 1303
ApoI	RAATTY	5 cut(s)	308, 638, 710, 895, 1310
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
Asp718I	GGTACC	1 cut(s)	1190
AspLEI	GCGC	2 cut(s)	175, 939
AspS9I	GGNCC	6 cut(s)	73, 695, 1051, 1168, 1169, 1235
AsuC2I	CCSGG	3 cut(s)	71, 1543, 1544
AsuHPI	GGTGA	4 cut(s)	89, 619, 1258, 1373
AvaI	CYCGRG	3 cut(s)	278, 1483, 1542
AvaII	GGWCC	3 cut(s)	73, 695, 1051
AxyI	CCTNAGG	1 cut(s)	866
BaeGI	GKGCMC	1 cut(s)	1172
BanI	GGYRCC	2 cut(s)	1060, 1190
BanII	GRGCYC	2 cut(s)	320, 1172
BauI	CACGAG	1 cut(s)	621
BbvI	GCAGC	4 cut(s)	254, 691, 843, 1315
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	3 cut(s)	73, 736, 1043
BciT130I	CCWGG	5 cut(s)	101, 229, 1166, 1239, 1269
BciVI	GTATCC	1 cut(s)	594
BcnI	CCSGG	3 cut(s)	71, 1543, 1544
BcoDI	GTCTC	4 cut(s)	11, 1516, 1556, 1587
BfaI	CTAG	3 cut(s)	498, 567, 1597
BfmI	CTRYAG	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	594
BglI	GCCNNNNNGGC	1 cut(s)	1288
BglII	AGATCT	1 cut(s)	129
Bme1390I	CCNGG	8 cut(s)	71, 101, 229, 1166, 1239, 1269, 1543, 1544
Bme18I	GGWCC	3 cut(s)	73, 695, 1051
BmeT110I	CYCGRG	3 cut(s)	278, 1483, 1542
BmgT120I	GGNCC	6 cut(s)	73, 695, 1051, 1168, 1169, 1235
BmiI	GGNNCC	9 cut(s)	12, 105, 264, 270, 1053, 1062, 1170, 1192, 1281
BmrFI	CCNGG	8 cut(s)	71, 101, 229, 1166, 1239, 1269, 1543, 1544
BmsI	GCATC	4 cut(s)	437, 712, 1198, 1511
BplI	GAGNNNNNCTC	6 cut(s)	350, 382, 791, 823, 1399, 1431
BpmI	CTGGAG	1 cut(s)	870
BpuMI	CCSGG	3 cut(s)	71, 1543, 1544
BsaBI	GATNNNNATC	1 cut(s)	134
BsaI	GGTCTC	2 cut(s)	11, 1587
BsaJI	CCNNGG	8 cut(s)	69, 228, 615, 1164, 1165, 1352, 1542, 1586
BsaWI	WCCGGW	3 cut(s)	259, 265, 1204
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	7 cut(s)	27, 449, 548, 1274, 1353, 1354, 1358
Bse21I	CCTNAGG	1 cut(s)	866
Bse3DI	GCAATG	3 cut(s)	846, 858, 1128
Bse8I	GATNNNNATC	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	5 cut(s)	101, 229, 1166, 1239, 1269
BseDI	CCNNGG	8 cut(s)	69, 228, 615, 1164, 1165, 1352, 1542, 1586
BseGI	GGATG	4 cut(s)	293, 727, 1213, 1502
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	7 cut(s)	27, 449, 548, 1274, 1353, 1354, 1358
BseMI	GCAATG	3 cut(s)	846, 858, 1128
BseMII	CTCAG	4 cut(s)	6, 411, 880, 1290
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	1172
BseX3I	CGGCCG	2 cut(s)	298, 749
BseXI	GCAGC	4 cut(s)	254, 691, 843, 1315
Bsh1236I	CGCG	2 cut(s)	173, 297
Bsh1285I	CGRYCG	2 cut(s)	301, 752
BshFI	GGCC	9 cut(s)	227, 300, 442, 739, 751, 1030, 1170, 1237, 1291
BshNI	GGYRCC	2 cut(s)	1060, 1190
BsiEI	CGRYCG	2 cut(s)	301, 752
BsiHKCI	CYCGRG	3 cut(s)	278, 1483, 1542
BsiSI	CCGG	6 cut(s)	71, 239, 260, 266, 1205, 1543
BslFI	GGGAC	2 cut(s)	991, 1147
BslI	CCNNNNNNNGG	7 cut(s)	27, 449, 548, 1274, 1353, 1354, 1358
BsmAI	GTCTC	4 cut(s)	11, 1516, 1556, 1587
BsmFI	GGGAC	2 cut(s)	991, 1147
BsmI	GAATGC	1 cut(s)	1182
BsnI	GGCC	9 cut(s)	227, 300, 442, 739, 751, 1030, 1170, 1237, 1291
Bso31I	GGTCTC	2 cut(s)	11, 1587
BsoBI	CYCGRG	3 cut(s)	278, 1483, 1542
Bsp120I	GGGCCC	1 cut(s)	1168
Bsp1286I	GDGCHC	2 cut(s)	320, 1172
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	94, 129, 1342
BspANI	GGCC	9 cut(s)	227, 300, 442, 739, 751, 1030, 1170, 1237, 1291
BspCNI	CTCAG	4 cut(s)	7, 412, 879, 1291
BspEI	TCCGGA	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	173, 297
BspLI	GGNNCC	9 cut(s)	12, 105, 264, 270, 1053, 1062, 1170, 1192, 1281
BspMAI	CTGCAG	1 cut(s)	861
BspPI	GGATC	1 cut(s)	1337
BspT107I	GGYRCC	2 cut(s)	1060, 1190
BspTNI	GGTCTC	2 cut(s)	11, 1587
BsrBI	CCGCTC	2 cut(s)	150, 285
BsrDI	GCAATG	3 cut(s)	846, 858, 1128
BssECI	CCNNGG	8 cut(s)	69, 228, 615, 1164, 1165, 1352, 1542, 1586
BssMI	GATC	3 cut(s)	94, 129, 1342
BssNAI	GTATAC	1 cut(s)	805
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	2 cut(s)	615, 1586
Bst1107I	GTATAC	1 cut(s)	805
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	5 cut(s)	101, 229, 1166, 1239, 1269
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	2 cut(s)	381, 1400
BstC8I	GCNNGC	2 cut(s)	9, 1262
BstDEI	CTNAG	6 cut(s)	15, 420, 732, 866, 1149, 1299
BstDSI	CCRYGG	1 cut(s)	1352
BstF5I	GGATG	4 cut(s)	293, 727, 1213, 1502
BstFNI	CGCG	2 cut(s)	173, 297
BstHHI	GCGC	2 cut(s)	175, 939
BstKTI	GATC	3 cut(s)	97, 132, 1345
BstMAI	GTCTC	4 cut(s)	11, 1516, 1556, 1587
BstMBI	GATC	3 cut(s)	94, 129, 1342
BstMCI	CGRYCG	2 cut(s)	301, 752
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 209, 745, 836, 1217, 1288
BstNI	CCWGG	5 cut(s)	101, 229, 1166, 1239, 1269
BstSCI	CCNGG	8 cut(s)	69, 99, 227, 1164, 1237, 1267, 1541, 1542
BstSFI	CTRYAG	1 cut(s)	857
BstSLI	GKGCMC	1 cut(s)	1172
BstUI	CGCG	2 cut(s)	173, 297
BstV1I	GCAGC	4 cut(s)	254, 691, 843, 1315
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BstZ17I	GTATAC	1 cut(s)	805
BstZI	CGGCCG	2 cut(s)	298, 749
Bsu36I	CCTNAGG	1 cut(s)	866
BsuI	GTATCC	1 cut(s)	594
BsuRI	GGCC	9 cut(s)	227, 300, 442, 739, 751, 1030, 1170, 1237, 1291
BtgI	CCRYGG	1 cut(s)	1352
BtsCI	GGATG	4 cut(s)	293, 727, 1213, 1502
BtsIMutI	CAGTG	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	9, 1262
CaiI	CAGNNNCTG	1 cut(s)	1298
CciNI	GCGGCCGC	1 cut(s)	298
CfoI	GCGC	2 cut(s)	175, 939
Cfr13I	GGNCC	6 cut(s)	73, 695, 1051, 1168, 1169, 1235
Cfr9I	CCCGGG	1 cut(s)	1542
Csp6I	GTAC	2 cut(s)	626, 1191
CviAII	CATG	1 cut(s)	1507
CviQI	GTAC	2 cut(s)	626, 1191
DdeI	CTNAG	6 cut(s)	15, 420, 732, 866, 1149, 1299
DpnI	GATC	3 cut(s)	96, 131, 1344
DpnII	GATC	3 cut(s)	94, 129, 1342
DraI	TTTAAA	1 cut(s)	1423
EaeI	YGGCCR	4 cut(s)	298, 749, 1028, 1289
EagI	CGGCCG	2 cut(s)	298, 749
Eam1104I	CTCTTC	2 cut(s)	381, 1400
EarI	CTCTTC	2 cut(s)	381, 1400
EciI	GGCGGA	3 cut(s)	72, 176, 1235
EclXI	CGGCCG	2 cut(s)	298, 749
Eco130I	CCWWGG	2 cut(s)	615, 1586
Eco24I	GRGCYC	2 cut(s)	320, 1172
Eco31I	GGTCTC	2 cut(s)	11, 1587
Eco47I	GGWCC	3 cut(s)	73, 695, 1051
Eco52I	CGGCCG	2 cut(s)	298, 749
Eco57I	CTGAAG	3 cut(s)	311, 936, 1491
Eco81I	CCTNAGG	1 cut(s)	866
Eco88I	CYCGRG	3 cut(s)	278, 1483, 1542
EcoO109I	RGGNCCY	2 cut(s)	1051, 1235
EcoRII	CCWGG	5 cut(s)	99, 227, 1164, 1237, 1267
EcoT14I	CCWWGG	2 cut(s)	615, 1586
EcoT38I	GRGCYC	2 cut(s)	320, 1172
ErhI	CCWWGG	2 cut(s)	615, 1586
FaeI	CATG	1 cut(s)	1510
FalI	AAGNNNNNCTT	2 cut(s)	865, 897
FaqI	GGGAC	2 cut(s)	991, 1147
FatI	CATG	1 cut(s)	1506
FauI	CCCGC	1 cut(s)	443
FblI	GTMKAC	1 cut(s)	804
FokI	GGATG	4 cut(s)	300, 734, 1220, 1489
FriOI	GRGCYC	2 cut(s)	320, 1172
FspBI	CTAG	3 cut(s)	498, 567, 1597
GlaI	GCGC	2 cut(s)	174, 938
GsuI	CTGGAG	1 cut(s)	870
HaeIII	GGCC	9 cut(s)	227, 300, 442, 739, 751, 1030, 1170, 1237, 1291
HapII	CCGG	6 cut(s)	71, 239, 260, 266, 1205, 1543
HhaI	GCGC	2 cut(s)	175, 939
Hin1II	CATG	1 cut(s)	1510
Hin6I	GCGC	2 cut(s)	173, 937
HinP1I	GCGC	2 cut(s)	173, 937
HindIII	AAGCTT	1 cut(s)	879
HpaII	CCGG	6 cut(s)	71, 239, 260, 266, 1205, 1543
HphI	GGTGA	4 cut(s)	89, 619, 1258, 1373
Hpy166II	GTNNAC	6 cut(s)	626, 695, 805, 916, 1014, 1381
Hpy188I	TCNGA	6 cut(s)	94, 372, 421, 955, 1104, 1300
Hpy188III	TCNNGA	9 cut(s)	14, 266, 280, 313, 347, 475, 887, 1398, 1485
Hpy8I	GTNNAC	6 cut(s)	626, 695, 805, 916, 1014, 1381
Hpy99I	CGWCG	1 cut(s)	1343
HpyAV	CCTTC	2 cut(s)	1492, 1507
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4IV	ACGT	2 cut(s)	195, 412
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 209, 745, 836, 1217, 1288
HpyF3I	CTNAG	6 cut(s)	15, 420, 732, 866, 1149, 1299
HpySE526I	ACGT	2 cut(s)	195, 412
Hsp92II	CATG	1 cut(s)	1510
HspAI	GCGC	2 cut(s)	173, 937
Kpn2I	TCCGGA	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	1194
Kzo9I	GATC	3 cut(s)	94, 129, 1342
LmnI	GCTCC	8 cut(s)	4, 16, 155, 268, 336, 1179, 1271, 1279
Lsp1109I	GCAGC	4 cut(s)	254, 691, 843, 1315
LweI	GCATC	4 cut(s)	437, 712, 1198, 1511
MaeI	CTAG	3 cut(s)	498, 567, 1597
MaeII	ACGT	2 cut(s)	195, 412
MaeIII	GTNAC	3 cut(s)	576, 1246, 1361
MalI	GATC	3 cut(s)	96, 131, 1344
MbiI	CCGCTC	2 cut(s)	150, 285
MboI	GATC	3 cut(s)	94, 129, 1342
MboII	GAAGA	7 cut(s)	398, 482, 656, 1093, 1417, 1484, 1522
MfeI	CAATTG	1 cut(s)	1321
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	320, 1172
MlyI	GAGTC	5 cut(s)	250, 367, 1304, 1475, 1558
MmeI	TCCRAC	4 cut(s)	395, 560, 1351, 1555
MroI	TCCGGA	1 cut(s)	265
MseI	TTAA	5 cut(s)	636, 761, 1092, 1107, 1422
MspI	CCGG	6 cut(s)	71, 239, 260, 266, 1205, 1543
MspR9I	CCNGG	8 cut(s)	71, 101, 229, 1166, 1239, 1269, 1543, 1544
MunI	CAATTG	1 cut(s)	1321
Mva1269I	GAATGC	1 cut(s)	1182
MvaI	CCWGG	5 cut(s)	101, 229, 1166, 1239, 1269
MvnI	CGCG	2 cut(s)	173, 297
MwoI	GCNNNNNNNGC	6 cut(s)	167, 209, 745, 836, 1217, 1288
NciI	CCSGG	3 cut(s)	71, 1543, 1544
NdeII	GATC	3 cut(s)	94, 129, 1342
NlaIII	CATG	1 cut(s)	1510
NlaIV	GGNNCC	9 cut(s)	12, 105, 264, 270, 1053, 1062, 1170, 1192, 1281
NmeAIII	GCCGAG	2 cut(s)	238, 271
NmuCI	GTSAC	3 cut(s)	576, 1246, 1361
NotI	GCGGCCGC	1 cut(s)	298
PaeR7I	CTCGAG	2 cut(s)	278, 1483
PasI	CCCWGGG	1 cut(s)	1165
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	1182
PfeI	GAWTC	4 cut(s)	31, 233, 343, 1388
PfoI	TCCNGGA	1 cut(s)	1267
PleI	GAGTC	5 cut(s)	250, 367, 1303, 1475, 1557
PpsI	GAGTC	5 cut(s)	250, 367, 1303, 1475, 1557
PpuMI	RGGWCCY	1 cut(s)	1051
Psp5II	RGGWCCY	1 cut(s)	1051
Psp6I	CCWGG	5 cut(s)	99, 227, 1164, 1237, 1267
PspGI	CCWGG	5 cut(s)	99, 227, 1164, 1237, 1267
PspN4I	GGNNCC	9 cut(s)	12, 105, 264, 270, 1053, 1062, 1170, 1192, 1281
PspOMI	GGGCCC	1 cut(s)	1168
PspPI	GGNCC	6 cut(s)	73, 695, 1051, 1168, 1169, 1235
PspPPI	RGGWCCY	1 cut(s)	1051
PstI	CTGCAG	1 cut(s)	861
PstNI	CAGNNNCTG	1 cut(s)	1298
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	2 cut(s)	627, 1192
RsaNI	GTAC	2 cut(s)	626, 1191
SaqAI	TTAA	5 cut(s)	636, 761, 1092, 1107, 1422
Sau3AI	GATC	3 cut(s)	94, 129, 1342
Sau96I	GGNCC	6 cut(s)	73, 695, 1051, 1168, 1169, 1235
SchI	GAGTC	5 cut(s)	250, 367, 1304, 1475, 1558
ScrFI	CCNGG	8 cut(s)	71, 101, 229, 1166, 1239, 1269, 1543, 1544
SduI	GDGCHC	2 cut(s)	320, 1172
SfaNI	GCATC	4 cut(s)	437, 712, 1198, 1511
SfcI	CTRYAG	1 cut(s)	857
Sfr274I	CTCGAG	2 cut(s)	278, 1483
SinI	GGWCC	3 cut(s)	73, 695, 1051
SlaI	CTCGAG	2 cut(s)	278, 1483
SmaI	CCCGGG	1 cut(s)	1544
SmlI	CTYRAG	2 cut(s)	278, 1483
SmoI	CTYRAG	2 cut(s)	278, 1483
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	3 cut(s)	498, 567, 1597
StyD4I	CCNGG	8 cut(s)	69, 99, 227, 1164, 1237, 1267, 1541, 1542
StyI	CCWWGG	2 cut(s)	615, 1586
TaaI	ACNGT	1 cut(s)	692
TaiI	ACGT	2 cut(s)	198, 415
TaqI	TCGA	4 cut(s)	279, 445, 1047, 1484
TauI	GCSGC	6 cut(s)	88, 173, 203, 300, 303, 751
TfiI	GAWTC	4 cut(s)	31, 233, 343, 1388
Tru1I	TTAA	5 cut(s)	636, 761, 1092, 1107, 1422
Tru9I	TTAA	5 cut(s)	636, 761, 1092, 1107, 1422
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	3 cut(s)	576, 1246, 1361
TseI	GCWGC	4 cut(s)	242, 704, 856, 1303
Tsp45I	GTSAC	3 cut(s)	576, 1246, 1361
TspDTI	ATGAA	3 cut(s)	172, 222, 1523
TspGWI	ACGGA	4 cut(s)	409, 1407, 1534, 1546
TspMI	CCCGGG	1 cut(s)	1542
TspRI	CASTG	1 cut(s)	697
VpaK11BI	GGWCC	3 cut(s)	73, 695, 1051
XapI	RAATTY	5 cut(s)	308, 638, 710, 895, 1310
XhoI	CTCGAG	2 cut(s)	278, 1483
XmaI	CCCGGG	1 cut(s)	1542
XmiI	GTMKAC	1 cut(s)	804
XspI	CTAG	3 cut(s)	498, 567, 1597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.