Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006376

Physical Location & Seq

Genomic Coordinates Reverse (-)

31178753 .. 31183779

Gene Structure 5027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1226500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGGAGGAGCCGCCGACACAAAGCTTTCTCTACGAAACCCTACCCGCCCTCTCTCTTCCCACCCCCAACCAATCTCCGCCGCCGCCCGAGGACCTCGAACCCTACTCCGTTTTCCGCAACGAAATTACTCTCTCCACTCCCCAATGCGCTCCGGTCGACACCACCGCCCCCGATTTCTTCTCACTCGACGTCGCCGCCGATGAACCCGACCCAATTCGTGCCTCCTCGTCTTCTGGCCGCCTAGCCGAGCCATGGCCGTCGCTTCACCAATCCGAGCCCACGACACCAGCTCCTCAAGAGCCGAAGCTCGAGAGCGGGTGGTTTCGCGGCCATTGTAAATTCAGGAGCCCTATGGTTCAGCTTCATAAAGAGATTGTGGATTTCTGTGATTTTCTGTCTCCAACTCCAGAAGAACAAGAGGCACGCAGTGCAGCAGTAAAACGGGTCTCGGACCTTATCAAATATATATTTCCTCGGTCCAAGGTTGAAGTTTTTGGGTCCTTCAAGACGGGGCTATATCTTCCCGCTAGTGATATTGATGCTGTCATTATGGGGTCAGGCGTCAAAACACCGCAGGAAGGATTGAAGGCCCTTTCTAGGGCGTTGTCACAGATGGGATTGGCAAAAAGGATACAGGTGATTGGAAAGGCACGTGTACCCATTATTAAGTTTGTAGAGAAAACAAGTGGCATTGCATTCGACATAAGTTTTGACATAGAAGGTGGACCAAAAGCTGCTGAATTTATTCAGGATGCAGTATCTAAGTGGCCTCCTTTGCGGCCTTTGTGTTTGATTTTGAAAGTCTTTTTACAACAGAGAGAGCTAAATGAGGTATACTCTGGTGGATTAGGTTCCTACGCTCTCCTTACAATGATCATGGCAATGTTGCATAGCCTCAGGGAATGTCGACCTCCGGAACAAAACTTGGGAGTTCTTTTGGTAAACTTCTTTGATTTATATGGACGGAAATTGAACACTTCAGATGTTGGTGTATCGTGCAATGGGGCAGGCACCTTTTTCAAAAAGAGTGTAAAAGGGTTCTTATCCAATGGACGACCTTTTCTTCTTGCCATTGAGGATCCCCAGGCACCGGAGAATGACGTCGGGAAGAACTCCTTCAACTATTTTCAGATTAGATCAGCTTTTTCAATGGCTTACACTACATTGACAAACCCTAAGGTCATTATGGGCCTAGGGCCAAACAGGAGCATTCTCGGTACTATAATTAGGCCTGATTCGGCGTTGGTGGAACGCAAAGGAGGGCCTGGAATGGTAACTTTCAATAGCTTGCTTCCTGGAGCAGGGGAGCCAGTTCAGCTAGAACATGATCCACAGGAGTTACTGGGCAATTGGCAATTCAATGATGAAGATGATCCCCTGCCACGGGGACATGATTCTGCTGCAGGTGACAGTGGGCAATCATCGGGAAAGAAGAGAAAAGCTTCTTTTAAAGAAAAGTCCGGTAAGAAGGGCAAAGAATATTGGGAGGTGGGGAAGAAGATCAGATATGAAGAAAATGGCTCAAGGAGAGAGAGGAGCAGGCATGAGGAAAATGGATCAAGGAAAGACAAGGGAAAAAAGAAGATGAGGAGACGGAGACATTCCCAAGATGGTGCCAATAGTTTTGGTCCTTATGGTGGTGCATGGACTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008334 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0010639 GO:0016070 GO:0016071 GO:0016074 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0019439 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033500 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042592 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045934 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0065008 GO:0070566 GO:0071044 GO:0071050 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

552

Amino Acids

60.94

Weight (kDa)

8.77

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	121 - 240	1.9e-22	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
NTP_transf_2	PF01909	148 - 239	5.2e-08	Nucleotidyltransferase domain
PAP_assoc	PF03828	308 - 366	4.5e-15	Cid1 family poly A polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53770
fragaria_vesca	FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190
malus_domestica	MD01G1239400.v1.1 MD03G1226500.v1.1 MD05G1272800.v1.1 MD08G1067800.v1.1 MD10G1025000.v1.1 MD11G1244500.v1.1 MD11G1244600.v1.1
prunus_persica	Prupe.4G182900_v2.0.a1
pyrus_communis	pycom03g17420
rosa_chinensis	RchiOBHm_Chr5g0034001
rosa_laevigata	RLG00000033518
rosa_multiflora	Rmu_sc0012341.1_g000005 Rmu_sc0014753.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046230
rosa_rugosa	Rorug05G0144100
rosa_samantha	Rh5AG235000 Rh5BG235800 Rh5CG265600 Rh5DG242200
rosa_wichuraiana	Rw5G021220 Rw5G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1394
AatII	GACGTC	2 cut(s)	192, 1104
Acc36I	ACCTGC	1 cut(s)	1394
AccB1I	GGYRCC	3 cut(s)	1010, 1087, 1613
AccBSI	CCGCTC	1 cut(s)	315
AccI	GTMKAC	3 cut(s)	156, 834, 907
AccII	CGCG	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	913
AclWI	GGATC	5 cut(s)	1073, 1086, 1322, 1367, 1564
AcoI	YGGCCR	3 cut(s)	235, 254, 328
AcsI	RAATTY	2 cut(s)	338, 740
AcuI	CTGAAG	1 cut(s)	963
AcvI	CACGTG	1 cut(s)	653
AcyI	GRCGYC	3 cut(s)	189, 561, 1101
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	657, 1219
AfiI	CCNNNNNNNGG	9 cut(s)	252, 578, 597, 598, 1090, 1301, 1383, 1384, 1637
AflIII	ACRYGT	1 cut(s)	652
AjnI	CCWGG	3 cut(s)	1083, 1264, 1294
Alw26I	GTCTC	4 cut(s)	402, 451, 1585, 1591
AlwI	GGATC	5 cut(s)	1073, 1086, 1322, 1367, 1564
Ama87I	CYCGRG	2 cut(s)	86, 308
Aor13HI	TCCGGA	1 cut(s)	913
ApeKI	GCWGC	3 cut(s)	431, 734, 1400
ApoI	RAATTY	2 cut(s)	338, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
Asp700I	GAANNNNTTC	3 cut(s)	744, 1115, 1441
AspA2I	CCTAGG	1 cut(s)	1192
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	257, 649, 1418
AvaI	CYCGRG	2 cut(s)	86, 308
AvaII	GGWCC	6 cut(s)	91, 451, 477, 498, 725, 1628
AvrII	CCTAGG	1 cut(s)	1192
AxyI	CCTNAGG	2 cut(s)	896, 1176
BamHI	GGATCC	1 cut(s)	1078
BanI	GGYRCC	3 cut(s)	1010, 1087, 1613
BanII	GRGCYC	2 cut(s)	279, 350
BbrPI	CACGTG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	443, 721, 1387
BccI	CCATC	2 cut(s)	607, 1604
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	679, 713
BciT130I	CCWGG	3 cut(s)	1085, 1266, 1296
BciVI	GTATCC	1 cut(s)	624
BclI	TGATCA	1 cut(s)	873
BcoDI	GTCTC	4 cut(s)	402, 451, 1585, 1591
BfaI	CTAG	5 cut(s)	242, 528, 597, 1193, 1319
BfmI	CTRYAG	1 cut(s)	1401
BfuAI	ACCTGC	1 cut(s)	1394
BfuI	GTATCC	1 cut(s)	624
BlnI	CCTAGG	1 cut(s)	1192
Bme1390I	CCNGG	3 cut(s)	1085, 1266, 1296
Bme18I	GGWCC	6 cut(s)	91, 451, 477, 498, 725, 1628
BmeT110I	CYCGRG	2 cut(s)	86, 308
BmiI	GGNNCC	9 cut(s)	9, 347, 499, 853, 1012, 1080, 1089, 1308, 1615
BmrFI	CCNGG	3 cut(s)	1085, 1266, 1296
BmrI	ACTGGG	1 cut(s)	1352
BmsI	GCATC	2 cut(s)	529, 742
BmuI	ACTGGG	1 cut(s)	1352
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BpmI	CTGGAG	2 cut(s)	390, 1317
BpuEI	CTTGAG	2 cut(s)	279, 1507
BsaAI	YACGTR	1 cut(s)	653
BsaHI	GRCGYC	3 cut(s)	189, 561, 1101
BsaI	GGTCTC	1 cut(s)	451
BsaJI	CCNNGG	7 cut(s)	87, 251, 473, 480, 1083, 1192, 1382
BsaWI	WCCGGW	4 cut(s)	151, 913, 1090, 1460
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	9 cut(s)	252, 578, 597, 598, 1090, 1301, 1383, 1384, 1637
Bse1I	ACTGG	2 cut(s)	1310, 1347
Bse21I	CCTNAGG	2 cut(s)	896, 1176
Bse3DI	GCAATG	3 cut(s)	690, 888, 1006
BseAI	TCCGGA	1 cut(s)	913
BseBI	CCWGG	3 cut(s)	1085, 1266, 1296
BseDI	CCNNGG	7 cut(s)	87, 251, 473, 480, 1083, 1192, 1382
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	9 cut(s)	252, 578, 597, 598, 1090, 1301, 1383, 1384, 1637
BseMI	GCAATG	3 cut(s)	690, 888, 1006
BseMII	CTCAG	1 cut(s)	910
BseNI	ACTGG	2 cut(s)	1310, 1347
BseRI	GAGGAG	5 cut(s)	20, 214, 282, 1549, 1603
BseXI	GCAGC	3 cut(s)	443, 721, 1387
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	156
BshNI	GGYRCC	3 cut(s)	1010, 1087, 1613
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	2 cut(s)	86, 308
BsiSI	CCGG	4 cut(s)	152, 914, 1091, 1461
BslFI	GGGAC	1 cut(s)	1401
BslI	CCNNNNNNNGG	9 cut(s)	252, 578, 597, 598, 1090, 1301, 1383, 1384, 1637
BsmAI	GTCTC	4 cut(s)	402, 451, 1585, 1591
BsmBI	CGTCTC	1 cut(s)	1585
BsmFI	GGGAC	1 cut(s)	1401
BsmI	GAATGC	2 cut(s)	695, 1209
Bso31I	GGTCTC	1 cut(s)	451
BsoBI	CYCGRG	2 cut(s)	86, 308
Bsp1286I	GDGCHC	2 cut(s)	279, 350
Bsp13I	TCCGGA	1 cut(s)	913
Bsp143I	GATC	7 cut(s)	873, 1078, 1136, 1327, 1372, 1500, 1556
Bsp19I	CCATGG	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	909
BspEI	TCCGGA	1 cut(s)	913
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	9 cut(s)	9, 347, 499, 853, 1012, 1080, 1089, 1308, 1615
BspMAI	CTGCAG	1 cut(s)	1405
BspMI	ACCTGC	1 cut(s)	1394
BspPI	GGATC	5 cut(s)	1073, 1086, 1322, 1367, 1564
BspT107I	GGYRCC	3 cut(s)	1010, 1087, 1613
BspTNI	GGTCTC	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	315
BsrDI	GCAATG	3 cut(s)	690, 888, 1006
BsrI	ACTGG	2 cut(s)	1310, 1347
BssECI	CCNNGG	7 cut(s)	87, 251, 473, 480, 1083, 1192, 1382
BssMI	GATC	7 cut(s)	873, 1078, 1136, 1327, 1372, 1500, 1556
BssNAI	GTATAC	1 cut(s)	835
BssNI	GRCGYC	3 cut(s)	189, 561, 1101
BssT1I	CCWWGG	3 cut(s)	251, 480, 1192
Bst1107I	GTATAC	1 cut(s)	835
Bst2UI	CCWGG	3 cut(s)	1085, 1266, 1296
Bst4CI	ACNGT	1 cut(s)	1412
Bst6I	CTCTTC	2 cut(s)	60, 1427
BstACI	GRCGYC	3 cut(s)	189, 561, 1101
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	653
BstC8I	GCNNGC	4 cut(s)	424, 1009, 1289, 1541
BstDEI	CTNAG	3 cut(s)	762, 896, 1176
BstDSI	CCRYGG	2 cut(s)	251, 1382
BstENI	CCTNNNNNAGG	1 cut(s)	1299
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	7 cut(s)	876, 1081, 1139, 1330, 1375, 1503, 1559
BstMAI	GTCTC	4 cut(s)	402, 451, 1585, 1591
BstMBI	GATC	7 cut(s)	873, 1078, 1136, 1327, 1372, 1500, 1556
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 775, 1315
BstNI	CCWGG	3 cut(s)	1085, 1266, 1296
BstSCI	CCNGG	3 cut(s)	1083, 1264, 1294
BstSFI	CTRYAG	1 cut(s)	1401
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	443, 721, 1387
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	1078
BstYI	RGATCY	1 cut(s)	1078
BstZ17I	GTATAC	1 cut(s)	835
Bsu36I	CCTNAGG	2 cut(s)	896, 1176
BsuI	GTATCC	1 cut(s)	624
BtgI	CCRYGG	2 cut(s)	251, 1382
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	433, 1417
BveI	ACCTGC	1 cut(s)	1394
Cac8I	GCNNGC	4 cut(s)	424, 1009, 1289, 1541
CfoI	GCGC	1 cut(s)	149
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	656, 1218
CviAII	CATG	6 cut(s)	252, 877, 1325, 1391, 1544, 1644
CviQI	GTAC	2 cut(s)	656, 1218
DdeI	CTNAG	3 cut(s)	762, 896, 1176
DpnI	GATC	7 cut(s)	875, 1080, 1138, 1329, 1374, 1502, 1558
DpnII	GATC	7 cut(s)	873, 1078, 1136, 1327, 1372, 1500, 1556
DraI	TTTAAA	1 cut(s)	1450
DraIII	CACNNNGTG	1 cut(s)	428
EaeI	YGGCCR	3 cut(s)	235, 254, 328
Eam1104I	CTCTTC	2 cut(s)	60, 1427
EarI	CTCTTC	2 cut(s)	60, 1427
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	3 cut(s)	251, 480, 1192
Eco147I	AGGCCT	1 cut(s)	1231
Eco24I	GRGCYC	2 cut(s)	279, 350
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	6 cut(s)	91, 451, 477, 498, 725, 1628
Eco57I	CTGAAG	1 cut(s)	963
Eco72I	CACGTG	1 cut(s)	653
Eco81I	CCTNAGG	2 cut(s)	896, 1176
Eco88I	CYCGRG	2 cut(s)	86, 308
EcoNI	CCTNNNNNAGG	1 cut(s)	1299
EcoO109I	RGGNCCY	4 cut(s)	91, 498, 589, 1262
EcoRII	CCWGG	3 cut(s)	1083, 1264, 1294
EcoT14I	CCWWGG	3 cut(s)	251, 480, 1192
EcoT38I	GRGCYC	2 cut(s)	279, 350
ErhI	CCWWGG	3 cut(s)	251, 480, 1192
Esp3I	CGTCTC	1 cut(s)	1585
FaeI	CATG	6 cut(s)	255, 880, 1328, 1394, 1547, 1647
FalI	AAGNNNNNCTT	2 cut(s)	1100, 1132
FaqI	GGGAC	1 cut(s)	1401
FatI	CATG	6 cut(s)	251, 876, 1324, 1390, 1543, 1643
FauI	CCCGC	3 cut(s)	52, 308, 532
FbaI	TGATCA	1 cut(s)	873
FblI	GTMKAC	3 cut(s)	156, 834, 907
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	2 cut(s)	279, 350
FspBI	CTAG	5 cut(s)	242, 528, 597, 1193, 1319
GlaI	GCGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	390, 1317
HapII	CCGG	4 cut(s)	152, 914, 1091, 1461
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	3 cut(s)	189, 561, 1101
Hin1II	CATG	6 cut(s)	255, 880, 1328, 1394, 1547, 1647
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	2 cut(s)	157, 908
HindII	GTYRAC	2 cut(s)	157, 908
HindIII	AAGCTT	2 cut(s)	22, 1440
HinfI	GANTC	3 cut(s)	1235, 1394, 1648
HpaII	CCGG	4 cut(s)	152, 914, 1091, 1461
HphI	GGTGA	3 cut(s)	257, 649, 1418
Hpy166II	GTNNAC	6 cut(s)	157, 656, 725, 835, 908, 943
Hpy188I	TCNGA	5 cut(s)	274, 451, 982, 1131, 1505
Hpy188III	TCNNGA	9 cut(s)	296, 310, 343, 407, 505, 749, 914, 1105, 1425
Hpy8I	GTNNAC	6 cut(s)	157, 656, 725, 835, 908, 943
Hpy99I	CGWCG	4 cut(s)	191, 194, 262, 1106
HpyAV	CCTTC	6 cut(s)	511, 572, 580, 713, 1126, 1462
HpyCH4III	ACNGT	1 cut(s)	1412
HpyCH4IV	ACGT	3 cut(s)	189, 652, 1101
HpyCH4V	TGCA	7 cut(s)	431, 695, 755, 889, 999, 1403, 1643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 775, 1315
HpyF3I	CTNAG	3 cut(s)	762, 896, 1176
HpySE526I	ACGT	3 cut(s)	189, 652, 1101
Hsp92I	GRCGYC	3 cut(s)	189, 561, 1101
Hsp92II	CATG	6 cut(s)	255, 880, 1328, 1394, 1547, 1647
HspAI	GCGC	1 cut(s)	147
Kpn2I	TCCGGA	1 cut(s)	913
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	7 cut(s)	873, 1078, 1136, 1327, 1372, 1500, 1556
LmnI	GCTCC	8 cut(s)	7, 154, 295, 345, 1206, 1298, 1306, 1536
Lsp1109I	GCAGC	3 cut(s)	443, 721, 1387
LweI	GCATC	2 cut(s)	529, 742
MaeI	CTAG	5 cut(s)	242, 528, 597, 1193, 1319
MaeII	ACGT	3 cut(s)	189, 652, 1101
MaeIII	GTNAC	4 cut(s)	606, 1273, 1338, 1406
MalI	GATC	7 cut(s)	875, 1080, 1138, 1329, 1374, 1502, 1558
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	7 cut(s)	873, 1078, 1136, 1327, 1372, 1500, 1556
MfeI	CAATTG	1 cut(s)	1348
MflI	RGATCY	1 cut(s)	1078
MhlI	GDGCHC	2 cut(s)	279, 350
MluCI	AATT	8 cut(s)	123, 213, 338, 740, 968, 1224, 1348, 1355
MlyI	GAGTC	1 cut(s)	1642
MmeI	TCCRAC	1 cut(s)	425
MroI	TCCGGA	1 cut(s)	913
MroXI	GAANNNNTTC	3 cut(s)	744, 1115, 1441
MseI	TTAA	2 cut(s)	666, 1449
MslI	CAYNNNNRTG	1 cut(s)	881
MspI	CCGG	4 cut(s)	152, 914, 1091, 1461
MspR9I	CCNGG	3 cut(s)	1085, 1266, 1296
MunI	CAATTG	1 cut(s)	1348
Mva1269I	GAATGC	2 cut(s)	695, 1209
MvaI	CCWGG	3 cut(s)	1085, 1266, 1296
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	428, 775, 1315
NcoI	CCATGG	1 cut(s)	251
NdeII	GATC	7 cut(s)	873, 1078, 1136, 1327, 1372, 1500, 1556
NlaIII	CATG	6 cut(s)	255, 880, 1328, 1394, 1547, 1647
NlaIV	GGNNCC	9 cut(s)	9, 347, 499, 853, 1012, 1080, 1089, 1308, 1615
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	606, 1406
PaeR7I	CTCGAG	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	1394
PceI	AGGCCT	1 cut(s)	1231
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	2 cut(s)	695, 1209
PdmI	GAANNNNTTC	3 cut(s)	744, 1115, 1441
PfeI	GAWTC	2 cut(s)	1235, 1394
PfoI	TCCNGGA	1 cut(s)	1294
PleI	GAGTC	1 cut(s)	1642
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	1642
Ppu21I	YACGTR	1 cut(s)	653
PpuMI	RGGWCCY	2 cut(s)	91, 498
Psp5II	RGGWCCY	2 cut(s)	91, 498
Psp6I	CCWGG	3 cut(s)	1083, 1264, 1294
PspCI	CACGTG	1 cut(s)	653
PspGI	CCWGG	3 cut(s)	1083, 1264, 1294
PspN4I	GGNNCC	9 cut(s)	9, 347, 499, 853, 1012, 1080, 1089, 1308, 1615
PspPPI	RGGWCCY	2 cut(s)	91, 498
PstI	CTGCAG	1 cut(s)	1405
PsuI	RGATCY	1 cut(s)	1078
RsaI	GTAC	2 cut(s)	657, 1219
RsaNI	GTAC	2 cut(s)	656, 1218
RseI	CAYNNNNRTG	1 cut(s)	881
SalI	GTCGAC	2 cut(s)	155, 906
SaqAI	TTAA	2 cut(s)	666, 1449
Sau3AI	GATC	7 cut(s)	873, 1078, 1136, 1327, 1372, 1500, 1556
SchI	GAGTC	1 cut(s)	1642
ScrFI	CCNGG	3 cut(s)	1085, 1266, 1296
SduI	GDGCHC	2 cut(s)	279, 350
SfaNI	GCATC	2 cut(s)	529, 742
SfcI	CTRYAG	1 cut(s)	1401
Sfr274I	CTCGAG	1 cut(s)	308
SinI	GGWCC	6 cut(s)	91, 451, 477, 498, 725, 1628
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	3 cut(s)	294, 308, 1522
SmoI	CTYRAG	3 cut(s)	294, 308, 1522
Sse9I	AATT	8 cut(s)	123, 213, 338, 740, 968, 1224, 1348, 1355
SseBI	AGGCCT	1 cut(s)	1231
SspI	AATATT	1 cut(s)	1481
SspMI	CTAG	5 cut(s)	242, 528, 597, 1193, 1319
StuI	AGGCCT	1 cut(s)	1231
StyD4I	CCNGG	3 cut(s)	1083, 1264, 1294
StyI	CCWWGG	3 cut(s)	251, 480, 1192
TaaI	ACNGT	1 cut(s)	1412
TaiI	ACGT	3 cut(s)	192, 655, 1104
TaqI	TCGA	6 cut(s)	96, 156, 186, 309, 699, 907
TaqII	GACCGA	1 cut(s)	465
TasI	AATT	8 cut(s)	123, 213, 338, 740, 968, 1224, 1348, 1355
TauI	GCSGC	7 cut(s)	13, 82, 85, 197, 240, 330, 781
TfiI	GAWTC	2 cut(s)	1235, 1394
Tru1I	TTAA	2 cut(s)	666, 1449
Tru9I	TTAA	2 cut(s)	666, 1449
TscAI	CASTG	2 cut(s)	433, 1417
TseFI	GTSAC	2 cut(s)	606, 1406
TseI	GCWGC	3 cut(s)	431, 734, 1400
Tsp45I	GTSAC	2 cut(s)	606, 1406
TspDTI	ATGAA	4 cut(s)	216, 353, 1380, 1524
TspGWI	ACGGA	3 cut(s)	97, 979, 1609
TspRI	CASTG	2 cut(s)	433, 1417
VpaK11BI	GGWCC	6 cut(s)	91, 451, 477, 498, 725, 1628
XagI	CCTNNNNNAGG	1 cut(s)	1299
XapI	RAATTY	2 cut(s)	338, 740
XhoI	CTCGAG	1 cut(s)	308
XmaJI	CCTAGG	1 cut(s)	1192
XmiI	GTMKAC	3 cut(s)	156, 834, 907
XmnI	GAANNNNTTC	3 cut(s)	744, 1115, 1441
XspI	CTAG	5 cut(s)	242, 528, 597, 1193, 1319
ZraI	GACGTC	2 cut(s)	190, 1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.