Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006376

Physical Location & Seq

Genomic Coordinates Reverse (-)

28335469 .. 28336614

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G021220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGCAGGCTCCTGATACCCCCCAAAGGATTCTCTACGAAACCCTATGCCCTCTCTCTCTCTCCACCCCGGACCAATCTCCGCCGCCGTCCGATCACCTGGAACCCTACTCCGTTTTCCGCAACGAGATCTCTATCTCCTCTCTCCGCTCCACTTCGGCGGACACCGCCGCGCCCAACTTCATCTCCCTTGACGTTGCCGCCGATGAAGCCGAGCCGAAATCGGCCTGGGAATCTCCGGCAGCCGAGCCAAAGACTCCGGTTCCGGAGCCGAAGCTCGAGAGCGGATGGTTTCGCGGCCGTAGTAAATTCAAGAGTCCTATGCTTCAGCTCCATAAAGAGATTCTGGACTTTTGTGAGTTTCTCTCTCCGACTCCACAGGAGGAAGAGGCACGGAGGACTGCAGTAGAACGTGTTTCTGAGTTATCAAATATATATGGCCTCGATGCGGGGTTGAAGTTTTTGGGTCATTCAAGACGGGGCTGTACCTTCCTGCTAGTGATATTGATGTTGTCATTATGCGGTCGGGTATTCCAACCCACAGCAAGGGTTGTATGCACTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008334 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0010639 GO:0016070 GO:0016071 GO:0016074 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0019439 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033500 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042592 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045934 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0065008 GO:0070566 GO:0071044 GO:0071050 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

188

Amino Acids

20.91

Weight (kDa)

5.16

Isoelectric Point (pI)

69.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53770
fragaria_vesca	FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190
malus_domestica	MD01G1239400.v1.1 MD03G1226500.v1.1 MD05G1272800.v1.1 MD08G1067800.v1.1 MD10G1025000.v1.1 MD11G1244500.v1.1 MD11G1244600.v1.1
prunus_persica	Prupe.4G182900_v2.0.a1
pyrus_communis	pycom03g17420
rosa_chinensis	RchiOBHm_Chr5g0034001
rosa_laevigata	RLG00000033518
rosa_multiflora	Rmu_sc0012341.1_g000005 Rmu_sc0014753.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046230
rosa_rugosa	Rorug05G0144100
rosa_samantha	Rh5AG235000 Rh5BG235800 Rh5CG265600 Rh5DG242200
rosa_wichuraiana	Rw5G021220 Rw5G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	150, 285
AccII	CGCG	2 cut(s)	173, 297
AccIII	TCCGGA	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	3 cut(s)	27, 448, 546
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	3 cut(s)	313, 457, 474
AjnI	CCWGG	2 cut(s)	99, 227
AluBI	AGCT	2 cut(s)	277, 331
AluI	AGCT	2 cut(s)	277, 331
Ama87I	CYCGRG	1 cut(s)	278
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	3 cut(s)	225, 298, 439
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	2 cut(s)	73, 285
BciT130I	CCWGG	2 cut(s)	101, 229
BcnI	CCSGG	1 cut(s)	71
BfaI	CTAG	2 cut(s)	497, 565
BfmI	CTRYAG	1 cut(s)	402
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	5 cut(s)	86, 171, 201, 243, 298
BlsI	GCNGC	5 cut(s)	87, 172, 202, 244, 299
Bme1390I	CCNGG	3 cut(s)	71, 101, 229
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	4 cut(s)	12, 105, 264, 270
BmrFI	CCNGG	3 cut(s)	71, 101, 229
BmsI	GCATC	1 cut(s)	436
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpuMI	CCSGG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	69, 228
BsaWI	WCCGGW	2 cut(s)	259, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 448, 546
Bse8I	GATNNNNATC	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	101, 229
BseDI	CCNNGG	2 cut(s)	69, 228
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	3 cut(s)	27, 448, 546
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	130
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	254
Bsh1236I	CGCG	2 cut(s)	173, 297
Bsh1285I	CGRYCG	2 cut(s)	301, 526
BshFI	GGCC	3 cut(s)	227, 300, 441
BsiEI	CGRYCG	2 cut(s)	301, 526
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	4 cut(s)	71, 239, 260, 266
BslI	CCNNNNNNNGG	3 cut(s)	27, 448, 546
BsnI	GGCC	3 cut(s)	227, 300, 441
BsoBI	CYCGRG	1 cut(s)	278
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	94, 129
BspANI	GGCC	3 cut(s)	227, 300, 441
BspCNI	CTCAG	1 cut(s)	412
BspEI	TCCGGA	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	173, 297
BspLI	GGNNCC	4 cut(s)	12, 105, 264, 270
BspMAI	CTGCAG	1 cut(s)	406
BsrBI	CCGCTC	2 cut(s)	150, 285
BssECI	CCNNGG	2 cut(s)	69, 228
BssMI	GATC	2 cut(s)	94, 129
Bst2UI	CCWGG	2 cut(s)	101, 229
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	293
BstFNI	CGCG	2 cut(s)	173, 297
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	97, 132
BstMBI	GATC	2 cut(s)	94, 129
BstMCI	CGRYCG	2 cut(s)	301, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 209
BstNI	CCWGG	2 cut(s)	101, 229
BstSCI	CCNGG	3 cut(s)	69, 99, 227
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	2 cut(s)	173, 297
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	227, 300, 441
BtsCI	GGATG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	486
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	96, 131
DpnII	GATC	2 cut(s)	94, 129
EaeI	YGGCCR	1 cut(s)	298
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	2 cut(s)	72, 176
EclXI	CGGCCG	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	73
Eco52I	CGGCCG	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	99, 227
FaiI	YATR	8 cut(s)	49, 323, 336, 434, 436, 438, 520, 556
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	5 cut(s)	86, 171, 201, 243, 298
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	86, 171, 201, 243, 298
FspBI	CTAG	2 cut(s)	497, 565
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	5 cut(s)	86, 171, 201, 243, 298
HaeIII	GGCC	3 cut(s)	227, 300, 441
HapII	CCGG	4 cut(s)	71, 239, 260, 266
HhaI	GCGC	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	6 cut(s)	31, 233, 256, 316, 343, 373
HpaII	CCGG	4 cut(s)	71, 239, 260, 266
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	3 cut(s)	94, 372, 421
Hpy188III	TCNNGA	6 cut(s)	14, 266, 280, 313, 347, 474
HpyAV	CCTTC	1 cut(s)	499
HpyCH4IV	ACGT	2 cut(s)	195, 412
HpyCH4V	TGCA	2 cut(s)	404, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 209
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	195, 412
HspAI	GCGC	1 cut(s)	173
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	94, 129
LmnI	GCTCC	5 cut(s)	4, 16, 155, 268, 336
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	497, 565
MaeII	ACGT	2 cut(s)	195, 412
MalI	GATC	2 cut(s)	96, 131
MbiI	CCGCTC	2 cut(s)	150, 285
MboI	GATC	2 cut(s)	94, 129
MboII	GAAGA	1 cut(s)	398
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	3 cut(s)	250, 325, 367
MmeI	TCCRAC	2 cut(s)	395, 559
MnlI	CCTC	6 cut(s)	63, 151, 376, 382, 390, 452
MroI	TCCGGA	1 cut(s)	265
MspI	CCGG	4 cut(s)	71, 239, 260, 266
MspR9I	CCNGG	3 cut(s)	71, 101, 229
MvaI	CCWGG	2 cut(s)	101, 229
MvnI	CGCG	2 cut(s)	173, 297
MwoI	GCNNNNNNNGC	2 cut(s)	167, 209
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	2 cut(s)	94, 129
NlaIV	GGNNCC	4 cut(s)	12, 105, 264, 270
NmeAIII	GCCGAG	2 cut(s)	238, 271
PaeR7I	CTCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	31, 233, 343
PkrI	GCNGC	5 cut(s)	87, 172, 202, 244, 299
PleI	GAGTC	3 cut(s)	250, 324, 367
PpsI	GAGTC	3 cut(s)	250, 324, 367
Psp6I	CCWGG	2 cut(s)	99, 227
PspGI	CCWGG	2 cut(s)	99, 227
PspN4I	GGNNCC	4 cut(s)	12, 105, 264, 270
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
SatI	GCNGC	5 cut(s)	86, 171, 201, 243, 298
Sau3AI	GATC	2 cut(s)	94, 129
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	3 cut(s)	250, 325, 367
ScrFI	CCNGG	3 cut(s)	71, 101, 229
SetI	ASST	6 cut(s)	102, 198, 279, 333, 415, 491
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	402
Sfr274I	CTCGAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	308
SspMI	CTAG	2 cut(s)	497, 565
StyD4I	CCNGG	3 cut(s)	69, 99, 227
TaiI	ACGT	2 cut(s)	198, 415
TaqI	TCGA	2 cut(s)	279, 444
TasI	AATT	1 cut(s)	308
TauI	GCSGC	4 cut(s)	88, 173, 203, 300
TfiI	GAWTC	3 cut(s)	31, 233, 343
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	172, 222
TspGWI	ACGGA	2 cut(s)	103, 409
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	278
XspI	CTAG	2 cut(s)	497, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.