Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009786

Physical Location & Seq

Genomic Coordinates Reverse (-)

2378341 .. 2380904

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1030400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGGCGACTCTCAACACCTCCATGGCGGCCTGGATCCGCCACTTCCTCGCTTGCACGGGTGGTTGTTTTGGATGCTGCACTAAATCCACACCAATTACTGCTGTCGATGAACCTTCGAAGGGATTGAGAATTCAAGGGCGAAGTGTTAAGAAACCGGGCATCTCAGATGAGTTTTGGAGCAGCAGTACTTATGACTTGGACAATAGCGCCGTTCAATCCCAGAGAAGTGTCTCATCCATCAGCACATCTAACCAGACCCCCAACTATGGCAGTGTGGCTGGTAGTAGCATGAGCAGCCAATCCGACTATGTAAATAATGGTCTTGTTCTCTGGAACCAGAACAGGCTTGAGTGGATCGGAAGTGGCAACCCTAGGAATCAAATTCCAAAAAGTCGGGAAAATAGAGTAAGTTGGAATGCAACTTACGAACGATTGGTTGGAACAAAACAGAGACAGTTGCCCTACACGCAGCGCATTCCTTTGTCTGACATGATAGAATTTCTGGTGGAAGTATGGGAGCAGGAGGGGCTGTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

181

Amino Acids

20.03

Weight (kDa)

7.64

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
clamp_Gag1-like	PF13259	63 - 134	5.6e-09	Gag1-like, clamp domain
clamp_Gag1-like	PF13259	136 - 180	1.1e-10	Gag1-like, clamp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25360 AT5G25360 AT5G25360
fragaria_vesca	FvH4_1g03140
malus_domestica	MD02G1030400.v1.1 MD15G1172000.v1.1
prunus_persica	Prupe.7G244100_v2.0.a1
pyrus_communis	pycom02g02530 pycom15g15340
rosa_chinensis	RchiOBHm_Chr2g0088261 RchiOBHm_Chr2g0102501
rosa_laevigata	RLG00000015937
rosa_multiflora	Rmu_sc0002813.1_g000001 Rmu_sc0004235.1_g000041
rosa_roxburghii	Rroxscaffold_2G00152790
rosa_rugosa	Rorug01G0482500
rosa_samantha	Rh2AG037500 Rh2BG036700 Rh2CG037800 Rh2DG037200
rosa_wichuraiana	Rw2G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 29, 40
AclWI	GGATC	3 cut(s)	31, 44, 365
AcsI	RAATTY	3 cut(s)	132, 384, 500
AfaI	GTAC	2 cut(s)	190, 536
AfiI	CCNNNNNNNGG	2 cut(s)	122, 269
AgsI	TTSAA	2 cut(s)	137, 218
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
Alw26I	GTCTC	2 cut(s)	238, 448
AlwI	GGATC	3 cut(s)	31, 44, 365
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	4 cut(s)	78, 183, 297, 472
ApoI	RAATTY	3 cut(s)	132, 384, 500
AspA2I	CCTAGG	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	212, 477
AsuC2I	CCSGG	1 cut(s)	159
AsuII	TTCGAA	1 cut(s)	119
AvrII	CCTAGG	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	36
BbvI	GCAGC	4 cut(s)	65, 195, 309, 484
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	238, 448
BfaI	CTAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	6 cut(s)	6, 30, 79, 184, 298, 473
BlnI	CCTAGG	1 cut(s)	374
BlsI	GCNGC	6 cut(s)	7, 31, 80, 185, 299, 474
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	34, 159
BmiI	GGNNCC	2 cut(s)	38, 338
BmrFI	CCNGG	2 cut(s)	34, 159
BmsI	GCATC	2 cut(s)	65, 171
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	24, 374
BsaXI	ACNNNNNCTCC	3 cut(s)	172, 202, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 269
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	24, 374
BseGI	GGATG	2 cut(s)	80, 236
BseLI	CCNNNNNNNGG	2 cut(s)	122, 269
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	4 cut(s)	65, 195, 309, 484
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	122, 269
BsmAI	GTCTC	2 cut(s)	238, 448
BsmI	GAATGC	2 cut(s)	424, 477
BsnI	GGCC	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	36, 357
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	5, 29, 40
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	38, 338
BspPI	GGATC	3 cut(s)	31, 44, 365
BspT104I	TTCGAA	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	24, 374
BssMI	GATC	2 cut(s)	36, 357
BssT1I	CCWWGG	2 cut(s)	24, 374
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	166
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	80, 236
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 477
BstKTI	GATC	2 cut(s)	39, 360
BstMAI	GTCTC	2 cut(s)	238, 448
BstMBI	GATC	2 cut(s)	36, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 469, 529
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	32, 157
BstV1I	GCAGC	4 cut(s)	65, 195, 309, 484
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	80, 236
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	2 cut(s)	212, 477
Csp6I	GTAC	2 cut(s)	189, 535
CviAII	CATG	3 cut(s)	25, 292, 493
CviJI	RGCY	5 cut(s)	32, 281, 300, 349, 532
CviKI_1	RGCY	5 cut(s)	32, 281, 300, 349, 532
CviQI	GTAC	2 cut(s)	189, 535
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	2 cut(s)	38, 359
DpnII	GATC	2 cut(s)	36, 357
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	24, 374
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	2 cut(s)	24, 374
ErhI	CCWWGG	2 cut(s)	24, 374
FaeI	CATG	3 cut(s)	28, 295, 496
FaiI	YATR	7 cut(s)	26, 195, 270, 293, 312, 494, 517
FatI	CATG	3 cut(s)	24, 291, 492
Fnu4HI	GCNGC	6 cut(s)	6, 30, 79, 184, 298, 473
FokI	GGATG	2 cut(s)	87, 223
Fsp4HI	GCNGC	6 cut(s)	6, 30, 79, 184, 298, 473
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	2 cut(s)	211, 476
GluI	GCNGC	6 cut(s)	6, 30, 79, 184, 298, 473
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	2 cut(s)	212, 477
Hin1II	CATG	3 cut(s)	28, 295, 496
Hin6I	GCGC	2 cut(s)	210, 475
HinP1I	GCGC	2 cut(s)	210, 475
HinfI	GANTC	2 cut(s)	10, 379
HpaII	CCGG	1 cut(s)	158
Hpy188I	TCNGA	4 cut(s)	169, 307, 362, 490
Hpy188III	TCNNGA	2 cut(s)	334, 398
HpyAV	CCTTC	2 cut(s)	115, 126
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	57, 81, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 469, 529
HpyF3I	CTNAG	1 cut(s)	166
Hsp92II	CATG	3 cut(s)	28, 295, 496
HspAI	GCGC	2 cut(s)	210, 475
Kzo9I	GATC	2 cut(s)	36, 357
LmnI	GCTCC	2 cut(s)	180, 520
Lsp1109I	GCAGC	4 cut(s)	65, 195, 309, 484
LweI	GCATC	2 cut(s)	65, 171
MaeI	CTAG	1 cut(s)	375
MalI	GATC	2 cut(s)	38, 359
MboI	GATC	2 cut(s)	36, 357
MflI	RGATCY	1 cut(s)	36
MluCI	AATT	4 cut(s)	96, 132, 384, 500
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	3 cut(s)	330, 395, 421
MnlI	CCTC	3 cut(s)	31, 59, 520
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	34, 159
Mva1269I	GAATGC	2 cut(s)	424, 477
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	297, 469, 529
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	36, 357
NlaIII	CATG	3 cut(s)	28, 295, 496
NlaIV	GGNNCC	2 cut(s)	38, 338
NspV	TTCGAA	1 cut(s)	119
PctI	GAATGC	2 cut(s)	424, 477
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	6 cut(s)	7, 31, 80, 185, 299, 474
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	38, 338
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	2 cut(s)	190, 536
RsaNI	GTAC	2 cut(s)	189, 535
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	6 cut(s)	6, 30, 79, 184, 298, 473
Sau3AI	GATC	2 cut(s)	36, 357
ScaI	AGTACT	1 cut(s)	190
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	34, 159
SetI	ASST	2 cut(s)	23, 118
SfaNI	GCATC	2 cut(s)	65, 171
SfuI	TTCGAA	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	96, 132, 384, 500
SsiI	CCGC	3 cut(s)	5, 29, 40
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	32, 157
StyI	CCWWGG	2 cut(s)	24, 374
TaaI	ACNGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	108, 119
TasI	AATT	4 cut(s)	96, 132, 384, 500
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	2 cut(s)	8, 32
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	4 cut(s)	78, 183, 297, 472
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	3 cut(s)	132, 384, 500
XmaJI	CCTAGG	1 cut(s)	374
XspI	CTAG	1 cut(s)	375
ZrmI	AGTACT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.