Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002813.1

Orthogroup ID

OG0009786

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3305

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002813.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 524 bp

ctctttctctctcgctcttctctgaaaccctagcgctctcctccctctcctgctctctttccacggctactgtctgtccctcattgaactactgcctccgtcccctcaccggcgctatcgcctctgctggtgcttctcttccaacgccaccacgtcgttgctctgagatacgaaccccaactggtccaacctgcctccaaggagtttatcctcctcgattggtgcaacttcgagcaccaagtgccagcatgagtagtggttgttttggatgttgcacgaaacccacaccgattattgctgtcgacgagccttcaaagggattgaaaattcaagggtggttggtgaagagacctggcatatcggatgatttttggagcagcagcacgtatgatttggacaacagtgctgtgcagtcccaaagaagcatctcatccatcagcaccttacaccagaccctcttccatggcagcggcgctggtagcacaagcagccaacctgactttgtaaatcaaggcaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

173

Amino Acids

18.17

Weight (kDa)

8.7

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25360 AT5G25360 AT5G25360
fragaria_vesca	FvH4_1g03140
malus_domestica	MD02G1030400.v1.1 MD15G1172000.v1.1
prunus_persica	Prupe.7G244100_v2.0.a1
pyrus_communis	pycom02g02530 pycom15g15340
rosa_chinensis	RchiOBHm_Chr2g0088261 RchiOBHm_Chr2g0102501
rosa_laevigata	RLG00000015937
rosa_multiflora	Rmu_sc0002813.1_g000001 Rmu_sc0004235.1_g000041
rosa_roxburghii	Rroxscaffold_2G00152790
rosa_rugosa	Rorug01G0482500
rosa_samantha	Rh2AG037500 Rh2BG036700 Rh2CG037800 Rh2DG037200
rosa_wichuraiana	Rw2G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	302
AciI	CCGC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	241
AfeI	AGCGCT	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	109, 316
AgsI	TTSAA	4 cut(s)	87, 314, 324, 331
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	351
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	342
Aor51HI	AGCGCT	1 cut(s)	35
ApeKI	GCWGC	4 cut(s)	377, 380, 467, 488
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	3 cut(s)	36, 115, 475
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	99, 354
AvaII	GGWCC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	389, 392, 479, 500
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	31
BfoI	RGCGCY	3 cut(s)	37, 116, 476
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	5 cut(s)	378, 381, 468, 471, 489
BlsI	GCNGC	5 cut(s)	379, 382, 469, 472, 490
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	434
BsaAI	YACGTR	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	62, 198, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 316
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	3 cut(s)	62, 198, 462
BseGI	GGATG	3 cut(s)	274, 369, 430
BseLI	CCNNNNNNNGG	2 cut(s)	109, 316
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	30, 203
BseXI	GCAGC	4 cut(s)	389, 392, 479, 500
BsgI	GTGCAG	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	3 cut(s)	62, 86, 399
BslI	CCNNNNNNNGG	2 cut(s)	109, 316
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	3 cut(s)	62, 86, 399
Bso31I	GGTCTC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	62, 198, 462
BssT1I	CCWWGG	2 cut(s)	198, 462
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	72, 403
Bst6I	CTCTTC	4 cut(s)	22, 143, 340, 463
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	62, 462
BstF5I	GGATG	3 cut(s)	274, 369, 430
BstH2I	RGCGCY	3 cut(s)	37, 116, 476
BstHHI	GCGC	3 cut(s)	36, 115, 475
BstMAI	GTCTC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 479, 488
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	4 cut(s)	389, 392, 479, 500
BtgI	CCRYGG	2 cut(s)	62, 462
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	274, 369, 430
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	3 cut(s)	36, 115, 475
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	184
CviAII	CATG	2 cut(s)	249, 463
CviJI	RGCY	3 cut(s)	67, 309, 491
CviKI_1	RGCY	3 cut(s)	67, 309, 491
DdeI	CTNAG	1 cut(s)	164
DraIII	CACNNNGTG	1 cut(s)	241
Eam1104I	CTCTTC	4 cut(s)	22, 143, 340, 463
EarI	CTCTTC	4 cut(s)	22, 143, 340, 463
Eco130I	CCWWGG	2 cut(s)	198, 462
Eco31I	GGTCTC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	2 cut(s)	198, 462
ErhI	CCWWGG	2 cut(s)	198, 462
FaeI	CATG	2 cut(s)	252, 466
FaiI	YATR	4 cut(s)	250, 358, 389, 464
FaqI	GGGAC	3 cut(s)	62, 86, 399
FatI	CATG	2 cut(s)	248, 462
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	5 cut(s)	378, 381, 468, 471, 489
FokI	GGATG	3 cut(s)	281, 376, 417
Fsp4HI	GCNGC	5 cut(s)	378, 381, 468, 471, 489
FspBI	CTAG	1 cut(s)	31
GlaI	GCGC	3 cut(s)	35, 114, 474
GluI	GCNGC	5 cut(s)	378, 381, 468, 471, 489
HaeII	RGCGCY	3 cut(s)	37, 116, 476
HapII	CCGG	1 cut(s)	110
HhaI	GCGC	3 cut(s)	36, 115, 475
Hin1II	CATG	2 cut(s)	252, 466
Hin6I	GCGC	3 cut(s)	34, 113, 473
HinP1I	GCGC	3 cut(s)	34, 113, 473
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	99, 354
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	24, 165, 363
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	2 cut(s)	158, 307
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	72, 403
HpyCH4IV	ACGT	2 cut(s)	153, 385
HpyCH4V	TGCA	3 cut(s)	225, 275, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 479, 488
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	153, 385
Hsp92II	CATG	2 cut(s)	252, 466
HspAI	GCGC	3 cut(s)	34, 113, 473
LguI	GCTCTTC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	4 cut(s)	389, 392, 479, 500
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	31
MaeII	ACGT	2 cut(s)	153, 385
MboII	GAAGA	4 cut(s)	9, 130, 357, 450
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	166, 211
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	241, 479, 488
NcoI	CCATGG	1 cut(s)	462
NlaIII	CATG	2 cut(s)	252, 466
PciSI	GCTCTTC	1 cut(s)	22
PkrI	GCNGC	5 cut(s)	379, 382, 469, 472, 490
Ppu21I	YACGTR	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	184
SalI	GTCGAC	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	22
SatI	GCNGC	5 cut(s)	378, 381, 468, 471, 489
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	6 cut(s)	156, 193, 354, 388, 445, 498
SfaNI	GCATC	1 cut(s)	434
SgrAI	CRCCGGYG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	2 cut(s)	198, 462
TaaI	ACNGT	2 cut(s)	72, 403
TaiI	ACGT	2 cut(s)	156, 388
TaqI	TCGA	3 cut(s)	216, 231, 302
TasI	AATT	1 cut(s)	326
TauI	GCSGC	1 cut(s)	473
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	4 cut(s)	377, 380, 467, 488
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	302
XspI	CTAG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.