Prupe.7G244100_v2.0.a1

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009786
Physical Location & Seq
Forward (+)
20871964 .. 20874107
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G244100.1

Sequence Viewer

Length: 537 bp
ATGGTGACGACTCTCAACGCCTCCGTGACAACTTGGATCCGTCACTTACTCGCTTGCATGGGTGGTTGTTTTGGATGCTGCACTAAACCCACACCAATTATTGCCGTCGATGAGCCGTCCAAGGGATTGAGAATTCAAGGTCGAACTGTTAAGAAACCTGGTATCTCAGATGATTTTTGGAGCAGCAGTACATACGACTTGGACAATAGTGCTCTTCAATCCCAGAGAAGCATCTCATCCATCAGCACCTCCAACCAGACCCTCACCCATGGCAGTGTGGCTGGTAGCACAAGCAGCCAGTCTGACTTTGTAAATAATGGTCTTGTTCTCTGGAACCAGACCAGGCTTGAGTGGATTGGAAGTGGCAAGCCTAGAAATCATACTCCAACAAGTCGGGAAAGCAGATTAAGTTGGAATTCAACGTATGAAAGATTGGTTGGAACCAAACAGAGACAGTCTTTCACGCAGCGCATTCCTTTGTCTGACATGATAGATTTTCTCGTCGAAGTATGGGAGCAGGAGGGGCTGTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

179

Amino Acids

19.79

Weight (kDa)

7.69

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 31, 44
AcsI RAATTY 2 cut(s) 132, 415
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 3 cut(s) 137, 218, 420
AjnI CCWGG 2 cut(s) 157, 341
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 2 cut(s) 31, 44
ApeKI GCWGC 4 cut(s) 78, 183, 294, 466
ApoI RAATTY 2 cut(s) 132, 415
AspLEI GCGC 1 cut(s) 471
AsuHPI GGTGA 2 cut(s) 16, 256
BamHI GGATCC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 4 cut(s) 65, 195, 306, 478
BccI CCATC 1 cut(s) 248
BceAI ACGGC 2 cut(s) 89, 100
BciT130I CCWGG 2 cut(s) 159, 343
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 1 cut(s) 372
BisI GCNGC 4 cut(s) 79, 184, 295, 467
BlsI GCNGC 4 cut(s) 80, 185, 296, 468
Bme1390I CCNGG 2 cut(s) 159, 343
BmiI GGNNCC 3 cut(s) 38, 335, 442
BmrFI CCNGG 2 cut(s) 159, 343
BmsI GCATC 2 cut(s) 65, 240
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 120, 268
BsaXI ACNNNNNCTCC 3 cut(s) 172, 202, 512
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 2 cut(s) 159, 343
BseDI CCNNGG 2 cut(s) 120, 268
BseGI GGATG 2 cut(s) 80, 236
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 298
BseXI GCAGC 4 cut(s) 65, 195, 306, 478
BsgI GTGCAG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 3 cut(s) 38, 335, 442
BspPI GGATC 2 cut(s) 31, 44
BspQI GCTCTTC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 120, 268
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 120, 268
Bst2UI CCWGG 2 cut(s) 159, 343
Bst4CI ACNGT 2 cut(s) 148, 456
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 55, 368
BstDEI CTNAG 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 2 cut(s) 80, 236
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 294, 523
BstNI CCWGG 2 cut(s) 159, 343
BstSCI CCNGG 2 cut(s) 157, 341
BstV1I GCAGC 4 cut(s) 65, 195, 306, 478
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 2 cut(s) 80, 236
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 55, 368
CfoI GCGC 1 cut(s) 471
CsiI ACCWGGT 1 cut(s) 157
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 58, 269, 487
CviJI RGCY 6 cut(s) 115, 281, 297, 346, 370, 526
CviKI_1 RGCY 6 cut(s) 115, 281, 297, 346, 370, 526
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 166
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 120, 268
EcoRI GAATTC 2 cut(s) 132, 415
EcoRII CCWGG 2 cut(s) 157, 341
EcoT14I CCWWGG 2 cut(s) 120, 268
ErhI CCWWGG 2 cut(s) 120, 268
FaeI CATG 3 cut(s) 61, 272, 490
FaiI YATR 8 cut(s) 59, 193, 270, 381, 426, 488, 511, 531
FatI CATG 3 cut(s) 57, 268, 486
Fnu4HI GCNGC 4 cut(s) 79, 184, 295, 467
FokI GGATG 2 cut(s) 87, 223
Fsp4HI GCNGC 4 cut(s) 79, 184, 295, 467
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 470
GluI GCNGC 4 cut(s) 79, 184, 295, 467
HhaI GCGC 1 cut(s) 471
Hin1II CATG 3 cut(s) 61, 272, 490
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 1 cut(s) 10
HphI GGTGA 2 cut(s) 16, 256
Hpy188I TCNGA 3 cut(s) 169, 304, 484
Hpy188III TCNNGA 2 cut(s) 331, 395
Hpy99I CGWCG 2 cut(s) 110, 506
HpyCH4III ACNGT 2 cut(s) 148, 456
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 2 cut(s) 57, 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 523
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 3 cut(s) 61, 272, 490
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 1 cut(s) 36
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 180, 514
Lsp1109I GCAGC 4 cut(s) 65, 195, 306, 478
LweI GCATC 2 cut(s) 65, 240
MabI ACCWGGT 1 cut(s) 157
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 3 cut(s) 4, 25, 41
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 3 cut(s) 96, 132, 415
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 4 cut(s) 276, 392, 410, 418
MnlI CCTC 4 cut(s) 31, 259, 272, 514
MseI TTAA 2 cut(s) 150, 407
MslI CAYNNNNRTG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 159, 343
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 2 cut(s) 159, 343
MwoI GCNNNNNNNGC 2 cut(s) 294, 523
NcoI CCATGG 1 cut(s) 268
NdeII GATC 1 cut(s) 36
NlaIII CATG 3 cut(s) 61, 272, 490
NlaIV GGNNCC 3 cut(s) 38, 335, 442
NmuCI GTSAC 3 cut(s) 4, 25, 41
PciSI GCTCTTC 1 cut(s) 219
PctI GAATGC 1 cut(s) 471
PkrI GCNGC 4 cut(s) 80, 185, 296, 468
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 157, 341
PspGI CCWGG 2 cut(s) 157, 341
PspN4I GGNNCC 3 cut(s) 38, 335, 442
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 150, 407
SatI GCNGC 4 cut(s) 79, 184, 295, 467
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 159, 343
SduI GDGCHC 1 cut(s) 214
SetI ASST 4 cut(s) 142, 160, 251, 425
SexAI ACCWGGT 1 cut(s) 157
SfaNI GCATC 2 cut(s) 65, 240
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 96, 132, 415
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 157, 341
StyI CCWWGG 2 cut(s) 120, 268
TaaI ACNGT 2 cut(s) 148, 456
TaiI ACGT 1 cut(s) 425
TaqI TCGA 3 cut(s) 108, 142, 504
TasI AATT 3 cut(s) 96, 132, 415
TatI WGTACW 1 cut(s) 188
Tru1I TTAA 2 cut(s) 150, 407
Tru9I TTAA 2 cut(s) 150, 407
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 3 cut(s) 4, 25, 41
TseI GCWGC 4 cut(s) 78, 183, 294, 466
Tsp45I GTSAC 3 cut(s) 4, 25, 41
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 2 cut(s) 13, 29
TspRI CASTG 1 cut(s) 280
XapI RAATTY 2 cut(s) 132, 415
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.