Rroxscaffold_2G00152790

Protein of unknown function (DUF4050)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009786
Physical Location & Seq
Forward (+)
89635608 .. 89636806
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152790.1

Sequence Viewer

Length: 432 bp
ATGCCTCGGGTGTCGGATGGGGATAAAAAAAAATGTCGTTTCAACAAACAAAAAAATTTAACCGCCTCGCTGATTGTGAAACGCCGTCGTTTTGGAGGTGAAAAAGAGAAGAAGCACTTTTCATTCACAGAGAGCAGTGGTTGTTTTGGATGTTGCACGAAACCCACACCGATTATTGCTGTCGACGAGCCTTCAAAGGGATTGAAAATTCAAGGGCGGTCGGTGAAGAAACCTGGCATATCGGATGATTTTTGGAGCAGCAGCACGTATGATTTGGACAACAGCGCTGTGCAGTCCCAGAGAAGCATCTCATCCATCAGCACCTTACACCAGACCCTCCTCCATGGCAGCGGCGCTGGTAGCACAAGCAGCCAACCCGACTTTGTAAATCAAGGCAAGTTTCGATTGCGTGTTACTTTGGTATGGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

10.03

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AciI CCGC 3 cut(s) 63, 217, 351
AcsI RAATTY 2 cut(s) 55, 207
AfeI AGCGCT 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 4 cut(s) 43, 195, 205, 212
AjnI CCWGG 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 6
Aor51HI AGCGCT 1 cut(s) 286
ApeKI GCWGC 4 cut(s) 258, 261, 348, 369
ApoI RAATTY 2 cut(s) 55, 207
AspLEI GCGC 2 cut(s) 287, 356
AsuHPI GGTGA 2 cut(s) 110, 235
AvaI CYCGRG 1 cut(s) 6
BbvI GCAGC 4 cut(s) 270, 273, 360, 381
BccI CCATC 2 cut(s) 11, 323
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 234
BfoI RGCGCY 2 cut(s) 288, 357
BisI GCNGC 5 cut(s) 259, 262, 349, 352, 370
BlsI GCNGC 5 cut(s) 260, 263, 350, 353, 371
Bme1390I CCNGG 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 5, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 5, 343
BseGI GGATG 4 cut(s) 22, 155, 250, 311
BseLI CCNNNNNNNGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 4 cut(s) 270, 273, 360, 381
BsgI GTGCAG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 343
BspACI CCGC 3 cut(s) 63, 217, 351
BssECI CCNNGG 2 cut(s) 5, 343
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 4 cut(s) 22, 155, 250, 311
BstH2I RGCGCY 2 cut(s) 288, 357
BstHHI GCGC 2 cut(s) 287, 356
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 2 cut(s) 360, 369
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 4 cut(s) 270, 273, 360, 381
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 4 cut(s) 22, 155, 250, 311
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
CfoI GCGC 2 cut(s) 287, 356
CviAII CATG 1 cut(s) 344
CviJI RGCY 2 cut(s) 190, 372
CviKI_1 RGCY 2 cut(s) 190, 372
Eco130I CCWWGG 1 cut(s) 343
Eco47III AGCGCT 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 1 cut(s) 347
FaiI YATR 4 cut(s) 239, 270, 345, 424
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 5 cut(s) 259, 262, 349, 352, 370
FokI GGATG 4 cut(s) 29, 162, 257, 298
Fsp4HI GCNGC 5 cut(s) 259, 262, 349, 352, 370
GlaI GCGC 2 cut(s) 286, 355
GluI GCNGC 5 cut(s) 259, 262, 349, 352, 370
HaeII RGCGCY 2 cut(s) 288, 357
HhaI GCGC 2 cut(s) 287, 356
Hin1II CATG 1 cut(s) 347
Hin6I GCGC 2 cut(s) 285, 354
HinP1I GCGC 2 cut(s) 285, 354
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HphI GGTGA 2 cut(s) 110, 235
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 16, 244
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 2 cut(s) 90, 188
HpyAV CCTTC 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 156, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 369
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 1 cut(s) 347
HspAI GCGC 2 cut(s) 285, 354
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 5 cut(s) 219, 246, 311, 342, 344
Lsp1109I GCAGC 4 cut(s) 270, 273, 360, 381
LweI GCATC 1 cut(s) 315
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 412
MboII GAAGA 2 cut(s) 121, 238
MluCI AATT 2 cut(s) 55, 207
MnlI CCTC 5 cut(s) 15, 76, 89, 347, 350
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 360, 369
NcoI CCATGG 1 cut(s) 343
NlaIII CATG 1 cut(s) 347
PkrI GCNGC 5 cut(s) 260, 263, 350, 353, 371
Ppu21I YACGTR 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 5 cut(s) 259, 262, 349, 352, 370
ScrFI CCNGG 1 cut(s) 234
SetI ASST 4 cut(s) 100, 235, 269, 326
SfaNI GCATC 1 cut(s) 315
Sse9I AATT 2 cut(s) 55, 207
SsiI CCGC 3 cut(s) 63, 217, 351
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 343
TaiI ACGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 183, 403
TasI AATT 2 cut(s) 55, 207
TauI GCSGC 1 cut(s) 354
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 142
TseI GCWGC 4 cut(s) 258, 261, 348, 369
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 1 cut(s) 142
XapI RAATTY 2 cut(s) 55, 207
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.