Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004235.1

Orthogroup ID

OG0009786

Physical Location & Seq

Genomic Coordinates Forward (+)

97710 .. 103042

Gene Structure 5333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004235.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ctgctacaacagacagaccaacgcatctacgcccctcgcagtgaagaagaagaagaagaagaagaagaacatagaggagtcatttcttacacagaaaaacgccaccgttttcaatcagtagccatgaaggtgcgatcatcggtgaagaagatgtgcgagttttgtaagacaattaaacgccgtggacgtgtttatgtgtactgcacagccaatcctaagcataagcagagacagggcatgtctacatttgcatatcaaggcactgatgctcccatgtctgcagagactagtatcaccaagcaggagaacaactttggtcagagctctcacgtaggtctggcatctctgattcccagaaagaatgagccgtcaatgccctctccaacccttggatggagggcaagtctttacagtttcattcttctggaaaccgaatttgagctcttggatgattccggcgacttgatggtgtcgctcaacggttccctatctgcttggatccatcacttgcttgcttgcatgggtggttgttttggatgttgcacgaaacccacaccgattattgctgtcgacgagccttcaaagggattgaaaattcaagggcggtcggtgaagagacctggcatatcggatgatttttggagcagcagcacgtatgatttggacaacagcgctgtgcagtcccagagaagcgtctcatccatcagcaccttacaccagaccctcctccatggcagcggcgctggtagcacgagcagccaacctgactttgtaaatcaaggtcttgttctctggaaccaaaccaggcttgagtggattggaaatggcaagcctaaggatgaaactctaagaagtcgggaaaatagattaagttggaattcaacttacgaaagattggttggacccaaacagagacagccttttccccagcgcattcctctgtctgaaatgatagaatttctagtggaagtatgggagcaggaggggctgtacgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

332

Amino Acids

37.56

Weight (kDa)

6.79

Isoelectric Point (pI)

64.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25360 AT5G25360 AT5G25360
fragaria_vesca	FvH4_1g03140
malus_domestica	MD02G1030400.v1.1 MD15G1172000.v1.1
prunus_persica	Prupe.7G244100_v2.0.a1
pyrus_communis	pycom02g02530 pycom15g15340
rosa_chinensis	RchiOBHm_Chr2g0088261 RchiOBHm_Chr2g0102501
rosa_laevigata	RLG00000015937
rosa_multiflora	Rmu_sc0002813.1_g000001 Rmu_sc0004235.1_g000041
rosa_roxburghii	Rroxscaffold_2G00152790
rosa_rugosa	Rorug01G0482500
rosa_samantha	Rh2AG037500 Rh2BG036700 Rh2CG037800 Rh2DG037200
rosa_wichuraiana	Rw2G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccI	GTMKAC	2 cut(s)	242, 570
AciI	CCGC	2 cut(s)	604, 738
AclWI	GGATC	2 cut(s)	493, 506
AcsI	RAATTY	4 cut(s)	434, 594, 877, 956
AfaI	GTAC	2 cut(s)	200, 992
AfeI	AGCGCT	1 cut(s)	673
AfiI	CCNNNNNNNGG	3 cut(s)	389, 393, 584
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	5 cut(s)	113, 582, 592, 599, 882
AhlI	ACTAGT	1 cut(s)	287
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	619, 803
AjuI	GAANNNNNNNTTGG	2 cut(s)	882, 914
AluBI	AGCT	2 cut(s)	324, 442
AluI	AGCT	2 cut(s)	324, 442
Alw21I	GWGCWC	2 cut(s)	326, 444
Alw26I	GTCTC	5 cut(s)	223, 278, 610, 700, 907
AlwI	GGATC	2 cut(s)	493, 506
Aor51HI	AGCGCT	1 cut(s)	673
ApeKI	GCWGC	4 cut(s)	645, 648, 735, 756
ApoI	RAATTY	4 cut(s)	434, 594, 877, 956
AspLEI	GCGC	3 cut(s)	674, 743, 933
AspS9I	GGNCC	1 cut(s)	902
AsuHPI	GGTGA	3 cut(s)	154, 286, 622
AvaII	GGWCC	1 cut(s)	902
AxyI	CCTNAGG	1 cut(s)	834
BamHI	GGATCC	1 cut(s)	498
BanII	GRGCYC	2 cut(s)	326, 444
BauI	CACGAG	1 cut(s)	751
Bbv12I	GWGCWC	2 cut(s)	326, 444
BbvI	GCAGC	4 cut(s)	657, 660, 747, 768
BccI	CCATC	4 cut(s)	387, 460, 510, 710
BceAI	ACGGC	2 cut(s)	165, 352
BciT130I	CCWGG	2 cut(s)	621, 805
BcoDI	GTCTC	5 cut(s)	223, 278, 610, 700, 907
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	2 cut(s)	288, 962
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	2 cut(s)	675, 744
BisI	GCNGC	5 cut(s)	646, 649, 736, 739, 757
BlsI	GCNGC	5 cut(s)	647, 650, 737, 740, 758
Bme1390I	CCNGG	2 cut(s)	621, 805
Bme18I	GGWCC	1 cut(s)	902
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	902
BmiI	GGNNCC	4 cut(s)	484, 500, 797, 904
BmrFI	CCNGG	2 cut(s)	621, 805
BmsI	GCATC	3 cut(s)	33, 256, 350
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	830
BsaAI	YACGTR	2 cut(s)	331, 654
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	3 cut(s)	181, 388, 730
BsaXI	ACNNNNNCTCC	5 cut(s)	253, 283, 388, 418, 974
Bsc4I	CCNNNNNNNGG	3 cut(s)	389, 393, 584
Bse21I	CCTNAGG	1 cut(s)	834
BseBI	CCWGG	2 cut(s)	621, 805
BseDI	CCNNGG	3 cut(s)	181, 388, 730
BseGI	GGATG	6 cut(s)	398, 454, 542, 637, 698, 844
BseLI	CCNNNNNNNGG	3 cut(s)	389, 393, 584
BseRI	GAGGAG	2 cut(s)	90, 716
BseXI	GCAGC	4 cut(s)	657, 660, 747, 768
BseYI	CCCAGC	1 cut(s)	927
BsgI	GTGCAG	2 cut(s)	187, 698
Bsh1285I	CGRYCG	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	608
BsiHKAI	GWGCWC	2 cut(s)	326, 444
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	3 cut(s)	389, 393, 584
BsmAI	GTCTC	5 cut(s)	223, 278, 610, 700, 907
BsmBI	CGTCTC	1 cut(s)	700
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	933
Bso31I	GGTCTC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	326, 444
Bsp143I	GATC	2 cut(s)	134, 498
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	2 cut(s)	604, 738
BspLI	GGNNCC	4 cut(s)	484, 500, 797, 904
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	2 cut(s)	493, 506
BspTNI	GGTCTC	1 cut(s)	610
BssECI	CCNNGG	3 cut(s)	181, 388, 730
BssMI	GATC	2 cut(s)	134, 498
BssSI	CACGAG	1 cut(s)	751
BssT1I	CCWWGG	2 cut(s)	388, 730
Bst2BI	CACGAG	1 cut(s)	751
Bst2UI	CCWGG	2 cut(s)	621, 805
Bst4CI	ACNGT	3 cut(s)	107, 413, 482
Bst6I	CTCTTC	1 cut(s)	608
BstBAI	YACGTR	2 cut(s)	331, 654
BstC8I	GCNNGC	3 cut(s)	513, 517, 830
BstDEI	CTNAG	3 cut(s)	216, 834, 848
BstDSI	CCRYGG	2 cut(s)	181, 730
BstF5I	GGATG	6 cut(s)	398, 454, 542, 637, 698, 844
BstH2I	RGCGCY	2 cut(s)	675, 744
BstHHI	GCGC	3 cut(s)	674, 743, 933
BstKTI	GATC	2 cut(s)	137, 501
BstMAI	GTCTC	5 cut(s)	223, 278, 610, 700, 907
BstMBI	GATC	2 cut(s)	134, 498
BstMCI	CGRYCG	1 cut(s)	608
BstMWI	GCNNNNNNNGC	4 cut(s)	373, 747, 756, 985
BstNI	CCWGG	2 cut(s)	621, 805
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	2 cut(s)	619, 803
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	4 cut(s)	657, 660, 747, 768
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
Bsu36I	CCTNAGG	1 cut(s)	834
BtgI	CCRYGG	2 cut(s)	181, 730
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	6 cut(s)	398, 454, 542, 637, 698, 844
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	46, 261
Cac8I	GCNNGC	3 cut(s)	513, 517, 830
CfoI	GCGC	3 cut(s)	674, 743, 933
Cfr13I	GGNCC	1 cut(s)	902
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	2 cut(s)	199, 991
CviAII	CATG	5 cut(s)	124, 238, 274, 520, 731
CviQI	GTAC	2 cut(s)	199, 991
DdeI	CTNAG	3 cut(s)	216, 834, 848
DpnI	GATC	2 cut(s)	136, 500
DpnII	GATC	2 cut(s)	134, 498
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Ecl136II	GAGCTC	2 cut(s)	324, 442
Eco130I	CCWWGG	2 cut(s)	388, 730
Eco24I	GRGCYC	2 cut(s)	326, 444
Eco31I	GGTCTC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	902
Eco47III	AGCGCT	1 cut(s)	673
Eco53kI	GAGCTC	2 cut(s)	324, 442
Eco81I	CCTNAGG	1 cut(s)	834
EcoICRI	GAGCTC	2 cut(s)	324, 442
EcoRI	GAATTC	1 cut(s)	877
EcoRII	CCWGG	2 cut(s)	619, 803
EcoT14I	CCWWGG	2 cut(s)	388, 730
EcoT38I	GRGCYC	2 cut(s)	326, 444
ErhI	CCWWGG	2 cut(s)	388, 730
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	5 cut(s)	127, 241, 277, 523, 734
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	5 cut(s)	123, 237, 273, 519, 730
FblI	GTMKAC	2 cut(s)	242, 570
Fnu4HI	GCNGC	5 cut(s)	646, 649, 736, 739, 757
FokI	GGATG	6 cut(s)	405, 461, 549, 644, 685, 851
FriOI	GRGCYC	2 cut(s)	326, 444
Fsp4HI	GCNGC	5 cut(s)	646, 649, 736, 739, 757
FspBI	CTAG	2 cut(s)	288, 962
GlaI	GCGC	3 cut(s)	673, 742, 932
GluI	GCNGC	5 cut(s)	646, 649, 736, 739, 757
GsaI	CCCAGC	1 cut(s)	931
HaeII	RGCGCY	2 cut(s)	675, 744
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	3 cut(s)	674, 743, 933
Hin1II	CATG	5 cut(s)	127, 241, 277, 523, 734
Hin6I	GCGC	3 cut(s)	672, 741, 931
HinP1I	GCGC	3 cut(s)	672, 741, 931
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	3 cut(s)	78, 349, 452
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	3 cut(s)	154, 286, 622
Hpy166II	GTNNAC	4 cut(s)	185, 199, 243, 571
Hpy188I	TCNGA	4 cut(s)	321, 348, 631, 946
Hpy188III	TCNNGA	3 cut(s)	425, 793, 857
Hpy8I	GTNNAC	4 cut(s)	185, 199, 243, 571
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	2 cut(s)	121, 588
HpyCH4III	ACNGT	3 cut(s)	107, 413, 482
HpyCH4IV	ACGT	3 cut(s)	187, 330, 653
HpyCH4V	TGCA	6 cut(s)	204, 251, 281, 519, 543, 679
HpyF10VI	GCNNNNNNNGC	4 cut(s)	373, 747, 756, 985
HpyF3I	CTNAG	3 cut(s)	216, 834, 848
HpySE526I	ACGT	3 cut(s)	187, 330, 653
Hsp92II	CATG	5 cut(s)	127, 241, 277, 523, 734
HspAI	GCGC	3 cut(s)	672, 741, 931
Kzo9I	GATC	2 cut(s)	134, 498
LmnI	GCTCC	3 cut(s)	274, 642, 976
Lsp1109I	GCAGC	4 cut(s)	657, 660, 747, 768
LweI	GCATC	3 cut(s)	33, 256, 350
MaeI	CTAG	2 cut(s)	288, 962
MaeII	ACGT	3 cut(s)	187, 330, 653
MalI	GATC	2 cut(s)	136, 500
MboI	GATC	2 cut(s)	134, 498
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	2 cut(s)	326, 444
MluCI	AATT	5 cut(s)	171, 434, 594, 877, 956
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	3 cut(s)	407, 854, 880
MnlI	CCTC	8 cut(s)	45, 68, 388, 390, 734, 737, 948, 976
MseI	TTAA	2 cut(s)	174, 869
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	738
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	621, 805
Mva1269I	GAATGC	1 cut(s)	933
MvaI	CCWGG	2 cut(s)	621, 805
MwoI	GCNNNNNNNGC	4 cut(s)	373, 747, 756, 985
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	2 cut(s)	134, 498
NlaIII	CATG	5 cut(s)	127, 241, 277, 523, 734
NlaIV	GGNNCC	4 cut(s)	484, 500, 797, 904
NspI	RCATGY	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	933
PfeI	GAWTC	2 cut(s)	349, 452
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	5 cut(s)	647, 650, 737, 740, 758
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	2 cut(s)	331, 654
Psp124BI	GAGCTC	2 cut(s)	326, 444
Psp6I	CCWGG	2 cut(s)	619, 803
PspFI	CCCAGC	1 cut(s)	927
PspGI	CCWGG	2 cut(s)	619, 803
PspN4I	GGNNCC	4 cut(s)	484, 500, 797, 904
PspPI	GGNCC	1 cut(s)	902
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	498
RsaI	GTAC	2 cut(s)	200, 992
RsaNI	GTAC	2 cut(s)	199, 991
RseI	CAYNNNNRTG	1 cut(s)	128
SacI	GAGCTC	2 cut(s)	326, 444
SalI	GTCGAC	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	174, 869
SatI	GCNGC	5 cut(s)	646, 649, 736, 739, 757
Sau3AI	GATC	2 cut(s)	134, 498
Sau96I	GGNCC	1 cut(s)	902
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	621, 805
SduI	GDGCHC	2 cut(s)	326, 444
SfaNI	GCATC	3 cut(s)	33, 256, 350
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	902
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	5 cut(s)	171, 434, 594, 877, 956
SsiI	CCGC	2 cut(s)	604, 738
SspMI	CTAG	2 cut(s)	288, 962
SstI	GAGCTC	2 cut(s)	326, 444
StyD4I	CCNGG	2 cut(s)	619, 803
StyI	CCWWGG	2 cut(s)	388, 730
TaaI	ACNGT	3 cut(s)	107, 413, 482
TaiI	ACGT	3 cut(s)	190, 333, 656
TaqI	TCGA	1 cut(s)	570
TasI	AATT	5 cut(s)	171, 434, 594, 877, 956
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	2 cut(s)	349, 452
Tru1I	TTAA	2 cut(s)	174, 869
Tru9I	TTAA	2 cut(s)	174, 869
TscAI	CASTG	2 cut(s)	46, 268
TseI	GCWGC	4 cut(s)	645, 648, 735, 756
TspDTI	ATGAA	3 cut(s)	140, 406, 855
TspRI	CASTG	2 cut(s)	46, 268
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	902
XapI	RAATTY	4 cut(s)	434, 594, 877, 956
XceI	RCATGY	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XmiI	GTMKAC	2 cut(s)	242, 570
XspI	CTAG	2 cut(s)	288, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.