Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009786

Physical Location & Seq

Genomic Coordinates Reverse (-)

13352523 .. 13353902

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1172000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGGCGACGCTCAACACCTCCATGGCGGCCTGGATCCGCCACTTACTCGCTTGCATGGGTGGTTGTTTTGGATGCTGCACTAAACCCACACCAATTACTGCTGTCGATGAGCCTTCAAAGGGATTGAGAATTCAAGGGCGAAGTGTTAAGAAACCGGGCATCTCGGATGACTTTTGGAGCAGCAGTACTTATGATTTGGACAATAGTGCCGTTCAATCCCAGAGAAGTATCTCATCCATCAGCACATCCAACCAGACCCTCAACTTTGCCAGTGTGGCTGGTAGTAGCACAAGCAGCCAATCTGACTTTGTAAATAATGGCAAGTTTTCGTTGTATGTTATTTACAGCATTCTTATTTTGGTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

124

Amino Acids

13.2

Weight (kDa)

8.42

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25360 AT5G25360 AT5G25360
fragaria_vesca	FvH4_1g03140
malus_domestica	MD02G1030400.v1.1 MD15G1172000.v1.1
prunus_persica	Prupe.7G244100_v2.0.a1
pyrus_communis	pycom02g02530 pycom15g15340
rosa_chinensis	RchiOBHm_Chr2g0088261 RchiOBHm_Chr2g0102501
rosa_laevigata	RLG00000015937
rosa_multiflora	Rmu_sc0002813.1_g000001 Rmu_sc0004235.1_g000041
rosa_roxburghii	Rroxscaffold_2G00152790
rosa_rugosa	Rorug01G0482500
rosa_samantha	Rh2AG037500 Rh2BG036700 Rh2CG037800 Rh2DG037200
rosa_wichuraiana	Rw2G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 29, 40
AclWI	GGATC	2 cut(s)	31, 44
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	120, 137, 218
AjnI	CCWGG	1 cut(s)	32
AlwI	GGATC	2 cut(s)	31, 44
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	78, 183, 297
ApoI	RAATTY	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	65, 195, 309
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	278
BisI	GCNGC	5 cut(s)	6, 30, 79, 184, 298
BlsI	GCNGC	5 cut(s)	7, 31, 80, 185, 299
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	34, 159
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	34, 159
BmsI	GCATC	2 cut(s)	65, 171
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	4 cut(s)	80, 175, 236, 248
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	65, 195, 309
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	5, 29, 40
BspANI	GGCC	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	31, 44
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	80, 175, 236, 248
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 297
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	32, 157
BstV1I	GCAGC	3 cut(s)	65, 195, 309
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	4 cut(s)	80, 175, 236, 248
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	55
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	2 cut(s)	25, 58
CviJI	RGCY	4 cut(s)	32, 115, 281, 300
CviKI_1	RGCY	4 cut(s)	32, 115, 281, 300
CviQI	GTAC	1 cut(s)	189
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	28, 61
FaiI	YATR	4 cut(s)	26, 59, 195, 339
FatI	CATG	2 cut(s)	24, 57
Fnu4HI	GCNGC	5 cut(s)	6, 30, 79, 184, 298
FokI	GGATG	4 cut(s)	87, 182, 223, 235
Fsp4HI	GCNGC	5 cut(s)	6, 30, 79, 184, 298
GluI	GCNGC	5 cut(s)	6, 30, 79, 184, 298
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	28, 61
HpaII	CCGG	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	169, 307
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	57, 81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 297
Hsp92II	CATG	2 cut(s)	28, 61
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	19, 46, 171, 236, 267, 269, 286, 352
Lsp1109I	GCAGC	3 cut(s)	65, 195, 309
LweI	GCATC	2 cut(s)	65, 171
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MflI	RGATCY	1 cut(s)	36
MluCI	AATT	2 cut(s)	96, 132
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	2 cut(s)	31, 272
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	34, 159
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	278, 297
NciI	CCSGG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	28, 61
NlaIV	GGNNCC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	351
PkrI	GCNGC	5 cut(s)	7, 31, 80, 185, 299
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	5 cut(s)	6, 30, 79, 184, 298
Sau3AI	GATC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	34, 159
SetI	ASST	1 cut(s)	23
SfaNI	GCATC	2 cut(s)	65, 171
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	96, 132
SsiI	CCGC	3 cut(s)	5, 29, 40
StyD4I	CCNGG	2 cut(s)	32, 157
StyI	CCWWGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	96, 132
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	2 cut(s)	8, 32
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	3 cut(s)	78, 183, 297
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.