Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009786

Physical Location & Seq

Genomic Coordinates Reverse (-)

2613131 .. 2617971

Gene Structure 4841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGGTGCGATCATCGGTTAAGAAGATGTGCGAGTTTTGTAAGACAATTAAACGCCGTGGACGTGTTTATGTGTACTGCACAGCCAATCCTAAGCATAAGCAGAGACAGGGCATGTCTACATTTGCATGTCAAGGCACTGATGCTCCCATGTCTGCGGAGACTAGTATCACCAAGCAGGAGAACAACTTTGGTCAGAGCTCTCACGTAGGTCTGGCATCTCTGATTCCCAGAAAGAATGAGCCGTCGATGCTCTCTCCGACCCTTGGATGGAGGGCAAGTCTTTACAGTTTCATTCTTCTGGAAACCGAATTTGAGCTCTTGGATGATTCCGGCGACTTGATGGTGTCGCTCAACGGTTCCCTATCGGCTTGGATCCATCACTTGCTTGCTTGCATGGGTGGTTGTTTTGGATGCTGCACGAAACCCACACCGATTATTGCTGTCGACGAGCCTTCAAAGGGATTGAAAATTCAAGGGCGGTCGGTGAAGAAACCTGGCATATCGGATGATTTTTGGAGCAGCAGCACGTATGATTTGGACAACAGTGCTGTGCAGTCCCAGAGAAGCATCTCGTCTATCAGCACCTTACACCAGACCCTCCTCCATGGCAGCGGTGCTGGTAGCACGAGCAGCCAACCTGACTTTGTAAATCAAGGTCTTGTTCTCTGGAACCAAACCAGGCTTGAGTGGATTGGAAATGGCAAGCCTAAGGATGAAACTCTAAGAAGTCGGGAAAACAGATTAAGTTGGAATTCAACTTACGAAAGATTGGTTGGACCCAAACAGAGACAGCCTTTTCCCCAGCGCATTCCTCTGTCTGAAATGATAGAATTTCTAGTGGAAGTATGGGAGCAGGAGGGGCTGTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

292

Amino Acids

32.52

Weight (kDa)

8.58

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L36	PF00444	1 - 38	1.4e-20	Ribosomal protein L36
clamp_Gag1-like	PF13259	176 - 291	3.4e-20	Gag1-like, clamp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25360 AT5G25360 AT5G25360
fragaria_vesca	FvH4_1g03140
malus_domestica	MD02G1030400.v1.1 MD15G1172000.v1.1
prunus_persica	Prupe.7G244100_v2.0.a1
pyrus_communis	pycom02g02530 pycom15g15340
rosa_chinensis	RchiOBHm_Chr2g0088261 RchiOBHm_Chr2g0102501
rosa_laevigata	RLG00000015937
rosa_multiflora	Rmu_sc0002813.1_g000001 Rmu_sc0004235.1_g000041
rosa_roxburghii	Rroxscaffold_2G00152790
rosa_rugosa	Rorug01G0482500
rosa_samantha	Rh2AG037500 Rh2BG036700 Rh2CG037800 Rh2DG037200
rosa_wichuraiana	Rw2G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	119, 447
AciI	CCGC	3 cut(s)	158, 481, 615
AclWI	GGATC	2 cut(s)	370, 383
AcsI	RAATTY	4 cut(s)	311, 471, 754, 833
AfaI	GTAC	2 cut(s)	77, 869
AfiI	CCNNNNNNNGG	3 cut(s)	266, 270, 461
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	459, 469, 476, 759
AhlI	ACTAGT	1 cut(s)	164
AjiI	CACGTC	1 cut(s)	65
AjnI	CCWGG	2 cut(s)	496, 680
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AluBI	AGCT	2 cut(s)	201, 319
AluI	AGCT	2 cut(s)	201, 319
Alw21I	GWGCWC	2 cut(s)	203, 321
Alw26I	GTCTC	3 cut(s)	100, 155, 784
AlwI	GGATC	2 cut(s)	370, 383
ApeKI	GCWGC	5 cut(s)	417, 522, 525, 612, 633
ApoI	RAATTY	4 cut(s)	311, 471, 754, 833
AspLEI	GCGC	1 cut(s)	810
AspS9I	GGNCC	1 cut(s)	779
AsuHPI	GGTGA	2 cut(s)	163, 499
AvaII	GGWCC	1 cut(s)	779
AxyI	CCTNAGG	1 cut(s)	711
BamHI	GGATCC	1 cut(s)	375
BanII	GRGCYC	2 cut(s)	203, 321
BauI	CACGAG	1 cut(s)	628
Bbv12I	GWGCWC	2 cut(s)	203, 321
BbvI	GCAGC	5 cut(s)	404, 534, 537, 624, 645
BccI	CCATC	3 cut(s)	264, 337, 387
BceAI	ACGGC	2 cut(s)	42, 229
BciT130I	CCWGG	2 cut(s)	498, 682
BcoDI	GTCTC	3 cut(s)	100, 155, 784
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	165, 839
BisI	GCNGC	5 cut(s)	418, 523, 526, 613, 634
BlsI	GCNGC	5 cut(s)	419, 524, 527, 614, 635
Bme1390I	CCNGG	2 cut(s)	498, 682
Bme18I	GGWCC	1 cut(s)	779
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	4 cut(s)	361, 377, 674, 781
BmrFI	CCNGG	2 cut(s)	498, 682
BmsI	GCATC	5 cut(s)	133, 227, 240, 404, 579
Bpu10I	CCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	707
BsaAI	YACGTR	2 cut(s)	208, 531
BsaJI	CCNNGG	3 cut(s)	58, 265, 607
BsaXI	ACNNNNNCTCC	5 cut(s)	130, 160, 265, 295, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 270, 461
Bse21I	CCTNAGG	1 cut(s)	711
BseBI	CCWGG	2 cut(s)	498, 682
BseDI	CCNNGG	3 cut(s)	58, 265, 607
BseGI	GGATG	5 cut(s)	275, 331, 419, 514, 721
BseLI	CCNNNNNNNGG	3 cut(s)	266, 270, 461
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	5 cut(s)	404, 534, 537, 624, 645
BseYI	CCCAGC	1 cut(s)	804
BsgI	GTGCAG	3 cut(s)	64, 403, 575
Bsh1285I	CGRYCG	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	485
BsiHKAI	GWGCWC	2 cut(s)	203, 321
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	3 cut(s)	266, 270, 461
BsmAI	GTCTC	3 cut(s)	100, 155, 784
BsmFI	GGGAC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	810
Bsp1286I	GDGCHC	2 cut(s)	203, 321
Bsp143I	GATC	2 cut(s)	11, 375
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	3 cut(s)	158, 481, 615
BspLI	GGNNCC	4 cut(s)	361, 377, 674, 781
BspPI	GGATC	2 cut(s)	370, 383
BssECI	CCNNGG	3 cut(s)	58, 265, 607
BssMI	GATC	2 cut(s)	11, 375
BssSI	CACGAG	1 cut(s)	628
BssT1I	CCWWGG	2 cut(s)	265, 607
Bst2BI	CACGAG	1 cut(s)	628
Bst2UI	CCWGG	2 cut(s)	498, 682
Bst4CI	ACNGT	3 cut(s)	290, 359, 548
BstBAI	YACGTR	2 cut(s)	208, 531
BstC8I	GCNNGC	3 cut(s)	390, 394, 707
BstDEI	CTNAG	3 cut(s)	93, 711, 725
BstDSI	CCRYGG	2 cut(s)	58, 607
BstF5I	GGATG	5 cut(s)	275, 331, 419, 514, 721
BstHHI	GCGC	1 cut(s)	810
BstKTI	GATC	2 cut(s)	14, 378
BstMAI	GTCTC	3 cut(s)	100, 155, 784
BstMBI	GATC	2 cut(s)	11, 375
BstMCI	CGRYCG	1 cut(s)	485
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 633, 862
BstNI	CCWGG	2 cut(s)	498, 682
BstNSI	RCATGY	2 cut(s)	118, 132
BstSCI	CCNGG	2 cut(s)	496, 680
BstV1I	GCAGC	5 cut(s)	404, 534, 537, 624, 645
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
Bsu36I	CCTNAGG	1 cut(s)	711
BtgI	CCRYGG	2 cut(s)	58, 607
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	5 cut(s)	275, 331, 419, 514, 721
BtsIMutI	CAGTG	2 cut(s)	138, 553
Cac8I	GCNNGC	3 cut(s)	390, 394, 707
CfoI	GCGC	1 cut(s)	810
Cfr13I	GGNCC	1 cut(s)	779
Csp6I	GTAC	2 cut(s)	76, 868
CviAII	CATG	5 cut(s)	115, 129, 151, 397, 608
CviQI	GTAC	2 cut(s)	76, 868
DdeI	CTNAG	3 cut(s)	93, 711, 725
DpnI	GATC	2 cut(s)	13, 377
DpnII	GATC	2 cut(s)	11, 375
Ecl136II	GAGCTC	2 cut(s)	201, 319
Eco130I	CCWWGG	2 cut(s)	265, 607
Eco24I	GRGCYC	2 cut(s)	203, 321
Eco47I	GGWCC	1 cut(s)	779
Eco53kI	GAGCTC	2 cut(s)	201, 319
Eco81I	CCTNAGG	1 cut(s)	711
EcoICRI	GAGCTC	2 cut(s)	201, 319
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	496, 680
EcoT14I	CCWWGG	2 cut(s)	265, 607
EcoT38I	GRGCYC	2 cut(s)	203, 321
ErhI	CCWWGG	2 cut(s)	265, 607
FaeI	CATG	5 cut(s)	118, 132, 154, 400, 611
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	5 cut(s)	114, 128, 150, 396, 607
FblI	GTMKAC	2 cut(s)	119, 447
Fnu4HI	GCNGC	5 cut(s)	418, 523, 526, 613, 634
FokI	GGATG	5 cut(s)	282, 338, 426, 521, 728
FriOI	GRGCYC	2 cut(s)	203, 321
Fsp4HI	GCNGC	5 cut(s)	418, 523, 526, 613, 634
FspBI	CTAG	2 cut(s)	165, 839
GlaI	GCGC	1 cut(s)	809
GluI	GCNGC	5 cut(s)	418, 523, 526, 613, 634
GsaI	CCCAGC	1 cut(s)	808
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	810
Hin1II	CATG	5 cut(s)	118, 132, 154, 400, 611
Hin6I	GCGC	1 cut(s)	808
HinP1I	GCGC	1 cut(s)	808
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	2 cut(s)	226, 329
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	163, 499
Hpy166II	GTNNAC	4 cut(s)	62, 76, 120, 448
Hpy188I	TCNGA	5 cut(s)	198, 225, 261, 508, 823
Hpy188III	TCNNGA	3 cut(s)	302, 670, 734
Hpy8I	GTNNAC	4 cut(s)	62, 76, 120, 448
Hpy99I	CGWCG	2 cut(s)	250, 452
HpyAV	CCTTC	1 cut(s)	465
HpyCH4III	ACNGT	3 cut(s)	290, 359, 548
HpyCH4IV	ACGT	3 cut(s)	64, 207, 530
HpyCH4V	TGCA	5 cut(s)	81, 128, 396, 420, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 633, 862
HpyF3I	CTNAG	3 cut(s)	93, 711, 725
HpySE526I	ACGT	3 cut(s)	64, 207, 530
Hsp92II	CATG	5 cut(s)	118, 132, 154, 400, 611
HspAI	GCGC	1 cut(s)	808
Kzo9I	GATC	2 cut(s)	11, 375
LmnI	GCTCC	3 cut(s)	151, 519, 853
Lsp1109I	GCAGC	5 cut(s)	404, 534, 537, 624, 645
LweI	GCATC	5 cut(s)	133, 227, 240, 404, 579
MaeI	CTAG	2 cut(s)	165, 839
MaeII	ACGT	3 cut(s)	64, 207, 530
MalI	GATC	2 cut(s)	13, 377
MboI	GATC	2 cut(s)	11, 375
MboII	GAAGA	3 cut(s)	37, 290, 502
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	203, 321
MluCI	AATT	5 cut(s)	48, 311, 471, 754, 833
MmeI	TCCRAC	3 cut(s)	284, 731, 757
MnlI	CCTC	5 cut(s)	267, 611, 614, 825, 853
MseI	TTAA	3 cut(s)	21, 51, 746
MslI	CAYNNNNRTG	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	615
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	498, 682
Mva1269I	GAATGC	1 cut(s)	810
MvaI	CCWGG	2 cut(s)	498, 682
MwoI	GCNNNNNNNGC	3 cut(s)	250, 633, 862
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	2 cut(s)	11, 375
NlaIII	CATG	5 cut(s)	118, 132, 154, 400, 611
NlaIV	GGNNCC	4 cut(s)	361, 377, 674, 781
NspI	RCATGY	2 cut(s)	118, 132
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	810
PfeI	GAWTC	2 cut(s)	226, 329
PkrI	GCNGC	5 cut(s)	419, 524, 527, 614, 635
Ppu21I	YACGTR	2 cut(s)	208, 531
Psp124BI	GAGCTC	2 cut(s)	203, 321
Psp6I	CCWGG	2 cut(s)	496, 680
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	2 cut(s)	496, 680
PspN4I	GGNNCC	4 cut(s)	361, 377, 674, 781
PspPI	GGNCC	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	2 cut(s)	77, 869
RsaNI	GTAC	2 cut(s)	76, 868
RseI	CAYNNNNRTG	1 cut(s)	127
SacI	GAGCTC	2 cut(s)	203, 321
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	21, 51, 746
SatI	GCNGC	5 cut(s)	418, 523, 526, 613, 634
Sau3AI	GATC	2 cut(s)	11, 375
Sau96I	GGNCC	1 cut(s)	779
ScrFI	CCNGG	2 cut(s)	498, 682
SduI	GDGCHC	2 cut(s)	203, 321
SfaNI	GCATC	5 cut(s)	133, 227, 240, 404, 579
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	5 cut(s)	48, 311, 471, 754, 833
SsiI	CCGC	3 cut(s)	158, 481, 615
SspMI	CTAG	2 cut(s)	165, 839
SstI	GAGCTC	2 cut(s)	203, 321
StyD4I	CCNGG	2 cut(s)	496, 680
StyI	CCWWGG	2 cut(s)	265, 607
TaaI	ACNGT	3 cut(s)	290, 359, 548
TaiI	ACGT	3 cut(s)	67, 210, 533
TaqI	TCGA	2 cut(s)	248, 447
TasI	AATT	5 cut(s)	48, 311, 471, 754, 833
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	226, 329
Tru1I	TTAA	3 cut(s)	21, 51, 746
Tru9I	TTAA	3 cut(s)	21, 51, 746
TscAI	CASTG	2 cut(s)	145, 553
TseI	GCWGC	5 cut(s)	417, 522, 525, 612, 633
TspDTI	ATGAA	3 cut(s)	17, 283, 732
TspRI	CASTG	2 cut(s)	145, 553
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	4 cut(s)	311, 471, 754, 833
XceI	RCATGY	2 cut(s)	118, 132
XmiI	GTMKAC	2 cut(s)	119, 447
XspI	CTAG	2 cut(s)	165, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.