Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006621

Physical Location & Seq

Genomic Coordinates Forward (+)

3586828 .. 3588010

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1044000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACCTGTGACCCACGACCTCTTGCTGTTTCGAGTCTCGACCCACTACTTCGTTCCTTTGCAAGTTATGTTGCATTTGATGTCGCGGTGGGAACTCAAATTATTAATGAATCTGAGGATCAGGACACGACCGATTTGCATAAGTGTATAGCATACATATGTGACTCGGCACCAAACCTAGATAAGTCTAATGTATGTTGTGTATTATTATCGTTCCAACATTCGTTTTGTTTTTCTACTGGAATTGAGTCTGATTTTGTAGGTGCTTTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004788 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042357 GO:0042723 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TPK_B1_binding TPK_catalytic

Protein Analysis

92

Amino Acids

9.9

Weight (kDa)

4.17

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02880 AT1G02880 AT1G02880 AT2G44750 AT2G44750
fragaria_vesca	FvH4_2g25500 FvH4_2g25500
malus_domestica	MD02G1044000.v1.1 MD02G1044100.v1.1 MD03G1285900.v1.1 MD06G1023200.v1.1 MD06G1023300.v1.1 MD11G1034700.v1.1 MD11G1305700.v1.1
prunus_persica	Prupe.8G259100_v2.0.a1
pyrus_communis	pycom03g22660 pycom11g26750
rosa_chinensis	RchiOBHm_Chr6g0293711
rosa_laevigata	RLG00000011930
rosa_roxburghii	Rroxscaffold_7G00173970
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350300 Rh6BG357800 Rh6CG364600 Rh6DG351500
rosa_wichuraiana	Rw6G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	1 cut(s)	86
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	126
AseI	ATTAAT	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
FaiI	YATR	8 cut(s)	69, 141, 149, 154, 158, 160, 196, 274
FauNDI	CATATG	1 cut(s)	158
FspBI	CTAG	1 cut(s)	179
HinfI	GANTC	4 cut(s)	34, 110, 164, 248
Hpy188I	TCNGA	2 cut(s)	115, 253
Hpy188III	TCNNGA	2 cut(s)	38, 122
HpyCH4V	TGCA	3 cut(s)	62, 74, 139
HpyF3I	CTNAG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	3 cut(s)	19, 107, 225
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	8, 161
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MluCI	AATT	2 cut(s)	99, 243
MlyI	GAGTC	3 cut(s)	43, 158, 257
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	2 cut(s)	30, 109
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	86
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	171
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	8, 161
PfeI	GAWTC	1 cut(s)	110
PleI	GAGTC	3 cut(s)	42, 158, 256
PpsI	GAGTC	3 cut(s)	42, 158, 256
PshBI	ATTAAT	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	118
SchI	GAGTC	3 cut(s)	43, 158, 257
SetI	ASST	4 cut(s)	8, 22, 180, 265
SmiMI	CAYNNNNRTG	1 cut(s)	157
Sse9I	AATT	2 cut(s)	99, 243
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	179
TaqI	TCGA	2 cut(s)	32, 39
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	99, 243
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	8, 161
Tsp45I	GTSAC	2 cut(s)	8, 161
TspDTI	ATGAA	1 cut(s)	123
VspI	ATTAAT	1 cut(s)	105
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.