Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006621

Physical Location & Seq

Genomic Coordinates Forward (+)

22731335 .. 22733432

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGACCTCATGTCTCATTCCTCCGCCTTCCTCCTCCCTACGATCCCGTCCAACCAAACGCCGTCTCCCACCTACGCGCTCGTCTTTCTCAACCAGAGCCTCCCGAGATTCGCTCCTCTGCTCTGGGACCACGCACAACTACGTATGTGTGCCGACGGCGGTGCCAATCGCGTTTACGACGACATGCCCCTTCTGCTCCCGCACGAAAATGCCGTAGATGTTAGGAAAAGGTACAAGCCCGATGTTATTAAAGGCGACATGGATTCAATCCGAAGGGATGTCTTGGAATTTTATGCTAGGATGGGAACTCAAATTATTAATGAATCTGAGGATCAGGACACGACTGATTTGCACAAGTGTATAGCATACATATGTGACTCGGCACCAAACCTAGATAAGTCTAATCTATGCATTCTGGTTGCTGGGGCACTTGGTGGACGGTTTGACCACGAGATTGGAAACATCAATGTGTTATGTCGATTCTCAAACATTCGAATAACTCTCATATCTGATGATTGCCTCAACCATCTTCTTCCAAGAACACACCGCCATGAGATCCATATTCAGTCTTCTGTTGAGGGCCCTCATTGTGGACTCATACCCATTGGGATGCCATCGGGAAGTACTACAACCACTGGGCTTCAATGGGATCTCGCTGAAACGGAGATGAGGTTTGGTGGTCTGATAAGTACATCAAATATCATCAAGGGAGAGAAAATAACAGTGCAGTCAGATTCAGATCTTCTTTGGACTATAAGCATTAAAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004788 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042357 GO:0042723 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TPK_B1_binding TPK_catalytic

Protein Analysis

258

Amino Acids

28.66

Weight (kDa)

5.63

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02880 AT1G02880 AT1G02880 AT2G44750 AT2G44750
fragaria_vesca	FvH4_2g25500 FvH4_2g25500
malus_domestica	MD02G1044000.v1.1 MD02G1044100.v1.1 MD03G1285900.v1.1 MD06G1023200.v1.1 MD06G1023300.v1.1 MD11G1034700.v1.1 MD11G1305700.v1.1
prunus_persica	Prupe.8G259100_v2.0.a1
pyrus_communis	pycom03g22660 pycom11g26750
rosa_chinensis	RchiOBHm_Chr6g0293711
rosa_laevigata	RLG00000011930
rosa_roxburghii	Rroxscaffold_7G00173970
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350300 Rh6BG357800 Rh6CG364600 Rh6DG351500
rosa_wichuraiana	Rw6G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	161, 382
AccII	CGCG	2 cut(s)	77, 171
AciI	CCGC	4 cut(s)	24, 159, 200, 547
AclWI	GGATC	4 cut(s)	37, 339, 550, 657
AcsI	RAATTY	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	233, 625, 691
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	267, 644
AhdI	GACNNNNNGTC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	18, 69
AlwI	GGATC	4 cut(s)	37, 339, 550, 657
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	580
ApaI	GGGCCC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	4 cut(s)	4, 127, 580, 581
AsuII	TTCGAA	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	4, 127
BaeGI	GKGCMC	2 cut(s)	430, 584
BanI	GGYRCC	2 cut(s)	161, 382
BanII	GRGCYC	1 cut(s)	584
BauI	CACGAG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	561
BccI	CCATC	3 cut(s)	295, 534, 622
BceAI	ACGGC	3 cut(s)	46, 172, 197
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 331, 365
BcoDI	GTCTC	2 cut(s)	18, 69
BfaI	CTAG	2 cut(s)	297, 392
BglII	AGATCT	1 cut(s)	739
BmcAI	AGTACT	1 cut(s)	625
Bme18I	GGWCC	2 cut(s)	4, 127
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	4 cut(s)	4, 127, 580, 581
BmiI	GGNNCC	4 cut(s)	128, 163, 384, 582
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	600
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
Bpu14I	TTCGAA	1 cut(s)	493
BsaAI	YACGTR	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	738
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 656, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	640
Bse8I	GATNNNNATC	1 cut(s)	738
BseGI	GGATG	3 cut(s)	283, 306, 615
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	2 cut(s)	23, 105
BseSI	GKGCMC	2 cut(s)	430, 584
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	746
Bsh1236I	CGCG	2 cut(s)	77, 171
BshFI	GGCC	1 cut(s)	582
BshNI	GGYRCC	2 cut(s)	161, 382
BsiHKCI	CYCGRG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	2 cut(s)	18, 69
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	582
BsoBI	CYCGRG	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	493
Bsp120I	GGGCCC	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	430, 584
Bsp143I	GATC	5 cut(s)	42, 331, 555, 649, 739
BspACI	CCGC	4 cut(s)	24, 159, 200, 547
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	2 cut(s)	77, 171
BspLI	GGNNCC	4 cut(s)	128, 163, 384, 582
BspPI	GGATC	4 cut(s)	37, 339, 550, 657
BspT104I	TTCGAA	1 cut(s)	493
BspT107I	GGYRCC	2 cut(s)	161, 382
BsrI	ACTGG	1 cut(s)	640
BssMI	GATC	5 cut(s)	42, 331, 555, 649, 739
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	441, 724
BstBAI	YACGTR	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	493
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	283, 306, 615
BstFNI	CGCG	2 cut(s)	77, 171
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	5 cut(s)	45, 334, 558, 652, 742
BstMAI	GTCTC	2 cut(s)	18, 69
BstMBI	GATC	5 cut(s)	42, 331, 555, 649, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	187
BstSLI	GKGCMC	2 cut(s)	430, 584
BstSNI	TACGTA	1 cut(s)	143
BstUI	CGCG	2 cut(s)	77, 171
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	3 cut(s)	555, 649, 739
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	3 cut(s)	555, 649, 739
BsuRI	GGCC	1 cut(s)	582
BtsCI	GGATG	3 cut(s)	283, 306, 615
BtsIMutI	CAGTG	2 cut(s)	633, 729
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	4 cut(s)	4, 127, 580, 581
Csp6I	GTAC	3 cut(s)	232, 624, 690
CviAII	CATG	4 cut(s)	10, 184, 259, 551
CviJI	RGCY	4 cut(s)	99, 238, 582, 640
CviKI_1	RGCY	4 cut(s)	99, 238, 582, 640
CviQI	GTAC	3 cut(s)	232, 624, 690
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	5 cut(s)	44, 333, 557, 651, 741
DpnII	GATC	5 cut(s)	42, 331, 555, 649, 739
DraIII	CACNNNGTG	1 cut(s)	434
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EciI	GGCGGA	1 cut(s)	13
Eco105I	TACGTA	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	4, 127
Eco88I	CYCGRG	1 cut(s)	103
EcoO109I	RGGNCCY	2 cut(s)	580, 581
EcoT22I	ATGCAT	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	584
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	4 cut(s)	13, 187, 262, 554
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	4 cut(s)	9, 183, 258, 550
FauI	CCCGC	1 cut(s)	207
FauNDI	CATATG	1 cut(s)	371
FokI	GGATG	3 cut(s)	290, 313, 622
FriOI	GRGCYC	1 cut(s)	584
FspBI	CTAG	2 cut(s)	297, 392
GlaI	GCGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	582
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	4 cut(s)	13, 187, 262, 554
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	7 cut(s)	108, 263, 323, 377, 480, 594, 734
Hpy166II	GTNNAC	3 cut(s)	175, 437, 593
Hpy188I	TCNGA	6 cut(s)	272, 328, 511, 684, 733, 739
Hpy188III	TCNNGA	3 cut(s)	103, 335, 618
Hpy8I	GTNNAC	3 cut(s)	175, 437, 593
Hpy99I	CGWCG	2 cut(s)	158, 182
HpyAV	CCTTC	3 cut(s)	37, 200, 267
HpyCH4III	ACNGT	2 cut(s)	441, 724
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	352, 411, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	4 cut(s)	13, 187, 262, 554
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	5 cut(s)	42, 331, 555, 649, 739
LmnI	GCTCC	2 cut(s)	118, 201
LpnPI	CCDG	6 cut(s)	107, 109, 320, 401, 408, 621
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	2 cut(s)	297, 392
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	5 cut(s)	44, 333, 557, 651, 741
MboI	GATC	5 cut(s)	42, 331, 555, 649, 739
MboII	GAAGA	4 cut(s)	521, 524, 561, 734
MflI	RGATCY	3 cut(s)	555, 649, 739
MhlI	GDGCHC	2 cut(s)	430, 584
MluCI	AATT	2 cut(s)	287, 312
MlyI	GAGTC	2 cut(s)	371, 588
MmeI	TCCRAC	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	413
MseI	TTAA	3 cut(s)	249, 318, 762
MslI	CAYNNNNRTG	5 cut(s)	207, 370, 467, 549, 608
Mva1269I	GAATGC	1 cut(s)	411
MvnI	CGCG	2 cut(s)	77, 171
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	5 cut(s)	42, 331, 555, 649, 739
NlaIII	CATG	4 cut(s)	13, 187, 262, 554
NlaIV	GGNNCC	4 cut(s)	128, 163, 384, 582
NmeAIII	GCCGAG	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	5 cut(s)	108, 263, 323, 480, 734
PleI	GAGTC	2 cut(s)	371, 588
PpsI	GAGTC	2 cut(s)	371, 588
Ppu21I	YACGTR	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	4 cut(s)	128, 163, 384, 582
PspOMI	GGGCCC	1 cut(s)	580
PspPI	GGNCC	4 cut(s)	4, 127, 580, 581
PsuI	RGATCY	3 cut(s)	555, 649, 739
RsaI	GTAC	3 cut(s)	233, 625, 691
RsaNI	GTAC	3 cut(s)	232, 624, 690
RseI	CAYNNNNRTG	5 cut(s)	207, 370, 467, 549, 608
SaqAI	TTAA	3 cut(s)	249, 318, 762
Sau3AI	GATC	5 cut(s)	42, 331, 555, 649, 739
Sau96I	GGNCC	4 cut(s)	4, 127, 580, 581
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	2 cut(s)	371, 588
SduI	GDGCHC	2 cut(s)	430, 584
SetI	ASST	6 cut(s)	9, 74, 145, 233, 393, 674
SfaNI	GCATC	1 cut(s)	600
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	2 cut(s)	4, 127
SmiMI	CAYNNNNRTG	5 cut(s)	207, 370, 467, 549, 608
SnaBI	TACGTA	1 cut(s)	143
Sse9I	AATT	2 cut(s)	287, 312
SsiI	CCGC	4 cut(s)	24, 159, 200, 547
SspMI	CTAG	2 cut(s)	297, 392
TaaI	ACNGT	2 cut(s)	441, 724
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	478, 493
TasI	AATT	2 cut(s)	287, 312
TatI	WGTACW	2 cut(s)	623, 689
TfiI	GAWTC	5 cut(s)	108, 263, 323, 480, 734
Tru1I	TTAA	3 cut(s)	249, 318, 762
Tru9I	TTAA	3 cut(s)	249, 318, 762
TscAI	CASTG	2 cut(s)	640, 729
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	2 cut(s)	640, 729
VpaK11BI	GGWCC	2 cut(s)	4, 127
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	2 cut(s)	297, 392
ZrmI	AGTACT	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.