Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006621

Physical Location & Seq

Genomic Coordinates Reverse (-)

13858253 .. 13859880

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011930

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGCTCATGTCTCATTCCTCAACCTTTCTCCTTCCGGCGCCGTCCAACCAATCGCCACCGTCGCTGACGTATGCGCTGGTGGTGCTCAACCAGAGCCTCCCGAGGTTCTCTCCATTGCTGTGGAGCCACGCGCAGCTGCGATTGTGTGCGGACGGCGGTGCCAATCGGGTTTATGATGACATGCCTCTGCTACTGCCTCATCTAGACGCATCAGATGTTCGCAAAAGGTACAAGCCTGACGTTATTAAAGGTGACATGGACTCAATCAGAAAGGAAGTCTTGGAGTTTTATGCTAATATGGGAATCAAGGTAGTTGATGAGTCTCATGATCAGGACACTACTGATCTTCACAAGTGTGTAGCGTATATATGTGACTGGGCACAAAAGCTTGACAAGTCTAATCTGTGCATTTTGGTTGCTGGAGCACTCGGTGGAAGGTTTGACCACGAGATAGGAAACATCAATGTGTTATATCGATTCTCGACCATTCGAATAATCCTTCTTTCTGATGATTGCCTCATCCACCTTCTTCCACGGACACACCGTCATGAGATCCATATTCAATCTTCAGTTGAAGGTCCTCATTGTGGACTTGTACCGATTGGGACTCCATCTGGAAGCACTACAACTACCGGGCTTCAATGGAATCTAAATGAAACAGAGATGAAGTTTGGTGGTTTGATAAGTACTTCAAATCTTGTCAAAGAAGACAAAATAACAGTGCAATCTGATTCAGATCTTCTTTGGACTATAACCATAAAAAGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004788 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042357 GO:0042723 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TPK_B1_binding TPK_catalytic

Protein Analysis

258

Amino Acids

28.7

Weight (kDa)

5.97

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPK_catalytic	PF04263	40 - 167	3.7e-39	Thiamin pyrophosphokinase, catalytic domain
TPK_B1_binding	PF04265	183 - 249	1.5e-22	Thiamin pyrophosphokinase, vitamin B1 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02880 AT1G02880 AT1G02880 AT2G44750 AT2G44750
fragaria_vesca	FvH4_2g25500 FvH4_2g25500
malus_domestica	MD02G1044000.v1.1 MD02G1044100.v1.1 MD03G1285900.v1.1 MD06G1023200.v1.1 MD06G1023300.v1.1 MD11G1034700.v1.1 MD11G1305700.v1.1
prunus_persica	Prupe.8G259100_v2.0.a1
pyrus_communis	pycom03g22660 pycom11g26750
rosa_chinensis	RchiOBHm_Chr6g0293711
rosa_laevigata	RLG00000011930
rosa_roxburghii	Rroxscaffold_7G00173970
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350300 Rh6BG357800 Rh6CG364600 Rh6DG351500
rosa_wichuraiana	Rw6G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	40, 161
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	152, 159
AclWI	GGATC	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	555
AcyI	GRCGYC	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	233, 600, 691
AfiI	CCNNNNNNNGG	2 cut(s)	590, 765
AgsI	TTSAA	4 cut(s)	566, 578, 644, 696
AhdI	GACNNNNNGTC	1 cut(s)	546
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	3 cut(s)	7, 139, 391
AluI	AGCT	3 cut(s)	7, 139, 391
Alw21I	GWGCWC	3 cut(s)	9, 90, 430
Alw26I	GTCTC	2 cut(s)	18, 330
AlwI	GGATC	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	767
ApeKI	GCWGC	2 cut(s)	136, 139
AspLEI	GCGC	3 cut(s)	43, 79, 136
AspS9I	GGNCC	1 cut(s)	581
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	385
BanI	GGYRCC	2 cut(s)	40, 161
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	3 cut(s)	9, 90, 430
BbvI	GCAGC	2 cut(s)	126, 148
BccI	CCATC	1 cut(s)	622
BceAI	ACGGC	3 cut(s)	28, 172, 754
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	18, 330
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	2 cut(s)	137, 140
BlsI	GCNGC	2 cut(s)	138, 141
BmcAI	AGTACT	1 cut(s)	691
Bme1390I	CCNGG	1 cut(s)	637
Bme18I	GGWCC	1 cut(s)	581
BmeRI	GACNNNNNGTC	1 cut(s)	546
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	3 cut(s)	42, 128, 163
BmrFI	CCNGG	1 cut(s)	637
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpmI	CTGGAG	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	637
Bsa29I	ATCGAT	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	104, 536
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 765
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	738
BseCI	ATCGAT	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	104, 536
BseGI	GGATG	1 cut(s)	522
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	590, 765
BseMI	GCAATG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	126, 148
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	769
BshNI	GGYRCC	2 cut(s)	40, 161
BshVI	ATCGAT	1 cut(s)	478
BsiHKAI	GWGCWC	3 cut(s)	9, 90, 430
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	38, 636
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	590, 765
BsmAI	GTCTC	2 cut(s)	18, 330
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	769
BsoBI	CYCGRG	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	4 cut(s)	9, 90, 385, 430
Bsp143I	GATC	4 cut(s)	331, 346, 555, 739
BspACI	CCGC	2 cut(s)	152, 159
BspANI	GGCC	1 cut(s)	769
BspDI	ATCGAT	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	2 cut(s)	328, 550
BspLI	GGNNCC	3 cut(s)	42, 128, 163
BspPI	GGATC	1 cut(s)	550
BspT104I	TTCGAA	1 cut(s)	493
BspT107I	GGYRCC	2 cut(s)	40, 161
BsrDI	GCAATG	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	104, 536
BssMI	GATC	4 cut(s)	331, 346, 555, 739
BssNI	GRCGYC	1 cut(s)	41
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst4CI	ACNGT	3 cut(s)	63, 548, 724
BstACI	GRCGYC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	493
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	1 cut(s)	522
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	3 cut(s)	43, 79, 136
BstKTI	GATC	4 cut(s)	334, 349, 558, 742
BstMAI	GTCTC	2 cut(s)	18, 330
BstMBI	GATC	4 cut(s)	331, 346, 555, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 85
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	635
BstSLI	GKGCMC	1 cut(s)	385
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	126, 148
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	2 cut(s)	555, 739
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	2 cut(s)	555, 739
Bsu15I	ATCGAT	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	769
BsuTUI	ATCGAT	1 cut(s)	478
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	729
CciI	TCATGA	2 cut(s)	328, 550
CfoI	GCGC	3 cut(s)	43, 79, 136
Cfr13I	GGNCC	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	478
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	3 cut(s)	232, 599, 690
CviAII	CATG	5 cut(s)	10, 184, 259, 329, 551
CviJI	RGCY	8 cut(s)	7, 99, 129, 139, 238, 391, 640, 769
CviKI_1	RGCY	8 cut(s)	7, 99, 129, 139, 238, 391, 640, 769
CviQI	GTAC	3 cut(s)	232, 599, 690
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	4 cut(s)	333, 348, 557, 741
DpnII	GATC	4 cut(s)	331, 346, 555, 739
DraIII	CACNNNGTG	1 cut(s)	434
DriI	GACNNNNNGTC	1 cut(s)	546
Eam1105I	GACNNNNNGTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	581
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaeI	CATG	5 cut(s)	13, 187, 262, 332, 554
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	5 cut(s)	9, 183, 258, 328, 550
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	137, 140
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	137, 140
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	3 cut(s)	42, 78, 135
GluI	GCNGC	2 cut(s)	137, 140
GsuI	CTGGAG	1 cut(s)	444
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	769
HapII	CCGG	2 cut(s)	38, 636
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	3 cut(s)	43, 79, 136
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	5 cut(s)	13, 187, 262, 332, 554
Hin6I	GCGC	3 cut(s)	41, 77, 134
HinP1I	GCGC	3 cut(s)	41, 77, 134
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	7 cut(s)	263, 306, 323, 480, 610, 649, 734
HpaII	CCGG	2 cut(s)	38, 636
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	5 cut(s)	217, 272, 511, 733, 739
Hpy188III	TCNNGA	7 cut(s)	103, 206, 329, 335, 484, 551, 618
Hpy8I	GTNNAC	1 cut(s)	593
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	5 cut(s)	44, 432, 512, 539, 572
HpyCH4III	ACNGT	3 cut(s)	63, 548, 724
HpyCH4IV	ACGT	2 cut(s)	71, 243
HpyCH4V	TGCA	2 cut(s)	411, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 85
HpySE526I	ACGT	2 cut(s)	71, 243
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	13, 187, 262, 332, 554
HspAI	GCGC	3 cut(s)	41, 77, 134
KasI	GGCGCC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	331, 346, 555, 739
LmnI	GCTCC	3 cut(s)	4, 126, 425
LpnPI	CCDG	9 cut(s)	51, 65, 107, 252, 320, 364, 408, 603, 649
Lsp1109I	GCAGC	2 cut(s)	126, 148
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	71, 243
MaeIII	GTNAC	2 cut(s)	254, 374
MalI	GATC	4 cut(s)	333, 348, 557, 741
MboI	GATC	4 cut(s)	331, 346, 555, 739
MboII	GAAGA	5 cut(s)	341, 524, 561, 722, 734
MflI	RGATCY	2 cut(s)	555, 739
MhlI	GDGCHC	4 cut(s)	9, 90, 385, 430
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	3 cut(s)	257, 332, 604
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	31, 99, 110, 198, 210, 530, 594
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	4 cut(s)	121, 357, 467, 549
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	2 cut(s)	38, 636
MspR9I	CCNGG	1 cut(s)	637
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	64, 85
NarI	GGCGCC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	4 cut(s)	331, 346, 555, 739
NlaIII	CATG	5 cut(s)	13, 187, 262, 332, 554
NlaIV	GGNNCC	3 cut(s)	42, 128, 163
NmuCI	GTSAC	2 cut(s)	254, 374
NspI	RCATGY	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	493
OliI	CACNNNNGTG	1 cut(s)	357
PagI	TCATGA	2 cut(s)	328, 550
PcsI	WCGNNNNNNNCGW	1 cut(s)	544
PfeI	GAWTC	4 cut(s)	306, 480, 649, 734
PkrI	GCNGC	2 cut(s)	138, 141
PleI	GAGTC	3 cut(s)	257, 331, 604
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	3 cut(s)	257, 331, 604
PpuMI	RGGWCCY	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	581
PspN4I	GGNNCC	3 cut(s)	42, 128, 163
PspPI	GGNCC	1 cut(s)	581
PspPPI	RGGWCCY	1 cut(s)	581
PsuI	RGATCY	2 cut(s)	555, 739
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	3 cut(s)	233, 600, 691
RsaNI	GTAC	3 cut(s)	232, 599, 690
RseI	CAYNNNNRTG	4 cut(s)	121, 357, 467, 549
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	137, 140
Sau3AI	GATC	4 cut(s)	331, 346, 555, 739
Sau96I	GGNCC	1 cut(s)	581
ScaI	AGTACT	1 cut(s)	691
SchI	GAGTC	3 cut(s)	257, 332, 604
ScrFI	CCNGG	1 cut(s)	637
SduI	GDGCHC	4 cut(s)	9, 90, 385, 430
SfaNI	GCATC	1 cut(s)	221
SfoI	GGCGCC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	4 cut(s)	121, 357, 467, 549
SsiI	CCGC	2 cut(s)	152, 159
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	635
TaaI	ACNGT	3 cut(s)	63, 548, 724
TaiI	ACGT	2 cut(s)	74, 246
TaqI	TCGA	3 cut(s)	478, 485, 493
TatI	WGTACW	1 cut(s)	689
TfiI	GAWTC	4 cut(s)	306, 480, 649, 734
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	2 cut(s)	254, 374
TseI	GCWGC	2 cut(s)	136, 139
Tsp45I	GTSAC	2 cut(s)	254, 374
TspDTI	ATGAA	2 cut(s)	672, 683
TspGWI	ACGGA	1 cut(s)	553
TspRI	CASTG	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	581
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.