Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006621

Physical Location & Seq

Genomic Coordinates Forward (+)

3588012 .. 3588441

Gene Structure 430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1044100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGCCATCTGGAAGTACTACAACCACTGGACTTCAATGGGATCTCGCTGAAACGGAGATGAGGTTTGGTGGTCTGATAAGTACATCGAATATCGTCAAGGGAGAGAAAATAACAGTGCAGTCAGATTCAGATCTTCTATGGACTATAAGCATTAAAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004788 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042357 GO:0042723 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TPK_B1_binding TPK_catalytic

Protein Analysis

55

Amino Acids

5.9

Weight (kDa)

4.99

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPK_B1_binding	PF04265	4 - 46	6.9e-14	Thiamin pyrophosphokinase, vitamin B1 binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02880 AT1G02880 AT1G02880 AT2G44750 AT2G44750
fragaria_vesca	FvH4_2g25500 FvH4_2g25500
malus_domestica	MD02G1044000.v1.1 MD02G1044100.v1.1 MD03G1285900.v1.1 MD06G1023200.v1.1 MD06G1023300.v1.1 MD11G1034700.v1.1 MD11G1305700.v1.1
prunus_persica	Prupe.8G259100_v2.0.a1
pyrus_communis	pycom03g22660 pycom11g26750
rosa_chinensis	RchiOBHm_Chr6g0293711
rosa_laevigata	RLG00000011930
rosa_roxburghii	Rroxscaffold_7G00173970
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350300 Rh6BG357800 Rh6CG364600 Rh6DG351500
rosa_wichuraiana	Rw6G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	16, 82
AgsI	TTSAA	1 cut(s)	35
AlwI	GGATC	1 cut(s)	48
BccI	CCATC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	129
BseJI	GATNNNNATC	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	40, 130
BspPI	GGATC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	40, 130
Bst4CI	ACNGT	1 cut(s)	115
BstKTI	GATC	2 cut(s)	43, 133
BstMBI	GATC	2 cut(s)	40, 130
BstX2I	RGATCY	2 cut(s)	40, 130
BstYI	RGATCY	2 cut(s)	40, 130
BtsIMutI	CAGTG	2 cut(s)	24, 120
Csp6I	GTAC	2 cut(s)	15, 81
CviQI	GTAC	2 cut(s)	15, 81
DpnI	GATC	2 cut(s)	42, 132
DpnII	GATC	2 cut(s)	40, 130
FaiI	YATR	2 cut(s)	139, 146
HinfI	GANTC	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	75, 124, 130
Hpy188III	TCNNGA	1 cut(s)	9
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	40, 130
LpnPI	CCDG	1 cut(s)	12
MalI	GATC	2 cut(s)	42, 132
MboI	GATC	2 cut(s)	40, 130
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	2 cut(s)	40, 130
MnlI	CCTC	1 cut(s)	54
MseI	TTAA	1 cut(s)	153
NdeII	GATC	2 cut(s)	40, 130
PfeI	GAWTC	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	40, 130
RsaI	GTAC	2 cut(s)	16, 82
RsaNI	GTAC	2 cut(s)	15, 81
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	40, 130
ScaI	AGTACT	1 cut(s)	16
SetI	ASST	1 cut(s)	65
SgeI	CNNG	4 cut(s)	21, 39, 56, 109
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	86
TatI	WGTACW	2 cut(s)	14, 80
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	31, 120
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	31, 120
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.