Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006621

Physical Location & Seq

Genomic Coordinates Forward (+)

21975230 .. 21977462

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G259100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGCTCATGTCTCATTCCTCAACCTTTCTCCTCCCTACGATCACACCGTCTCCAACCTATGCGCTTGTGGTGCTTAACCAGAGCCTCCCGAGATTCGCCCCTCTTCTATGGAAGCACGCACAACTACGTTTGTGTGCCGACGGCGGAGCAAATCGCGTTTACGATGACATGCCTCTTCTGTTGCCTCACGAAAACGCTTTCGATGTTCGGAAAAGGTACAAGCCTGACGTTATTAAAGGTGACATGGACTCAATCCGAAAGGAAGTCTTGGAATTTTATGCTAATATGGGGACCAAGATAATTGATGAATCTGATGATCAGGATACCACCGATCTACATAAGTGTGTAGCATATATATGTGACTGGGCACCAGACCTAGATAAATCCAATCTATGCATTCTGGTTGCTGGGGCACTTGGTGGACGGTTTGACCATGAGATTGGAAACATCAACGTGTTATGTCGATTCTCAACCATTAGAATAATTCTTATATCTGATGATTGCCTCATCCATCTTCTTCCAAGGACGCACCGCCATGAGATCCATATTCAACCAACCATTGAAGGCCCTCACTGTGGACTTATACCCATTGGGATGCCATCTGGAAGTACTACAACCACTGGGCTTCAATGGGATCTTGCTGAAACAGAGATGAAGTTTGGTGGTTTGATCAGTACTTCAAATATTGTCAAAGGAGAGAAAATCACCGTACAATCTGATTCAGATCTTCTTTGGACTATAAACATTAAAAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004788 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009229 GO:0009987 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042357 GO:0042723 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TPK_B1_binding TPK_catalytic

Protein Analysis

254

Amino Acids

28.29

Weight (kDa)

5.64

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02880 AT1G02880 AT1G02880 AT2G44750 AT2G44750
fragaria_vesca	FvH4_2g25500 FvH4_2g25500
malus_domestica	MD02G1044000.v1.1 MD02G1044100.v1.1 MD03G1285900.v1.1 MD06G1023200.v1.1 MD06G1023300.v1.1 MD11G1034700.v1.1 MD11G1305700.v1.1
prunus_persica	Prupe.8G259100_v2.0.a1
pyrus_communis	pycom03g22660 pycom11g26750
rosa_chinensis	RchiOBHm_Chr6g0293711
rosa_laevigata	RLG00000011930
rosa_roxburghii	Rroxscaffold_7G00173970
rosa_rugosa	Rorug06G0237500
rosa_samantha	Rh6AG350300 Rh6BG357800 Rh6CG364600 Rh6DG351500
rosa_wichuraiana	Rw6G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccII	CGCG	1 cut(s)	159
AciI	CCGC	2 cut(s)	147, 535
AclWI	GGATC	2 cut(s)	538, 645
AcsI	RAATTY	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	4 cut(s)	221, 613, 679, 714
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	4 cut(s)	554, 566, 632, 684
AluBI	AGCT	2 cut(s)	7, 757
AluI	AGCT	2 cut(s)	7, 757
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	18, 57
AlwI	GGATC	2 cut(s)	538, 645
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	568
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	294, 569
AsuHPI	GGTGA	2 cut(s)	254, 700
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	294
BaeGI	GKGCMC	2 cut(s)	373, 418
BanI	GGYRCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	522, 610
BceAI	ACGGC	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	2 cut(s)	319, 672
BcoDI	GTCTC	2 cut(s)	18, 57
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	758
BfuI	GTATCC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	727
BmcAI	AGTACT	2 cut(s)	613, 679
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	294, 569
BmiI	GGNNCC	2 cut(s)	295, 372
BmrI	ACTGGG	2 cut(s)	376, 633
BmsI	GCATC	1 cut(s)	588
BmuI	ACTGGG	2 cut(s)	376, 633
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	524
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	371, 628
Bse8I	GATNNNNATC	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	2 cut(s)	510, 603
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseNI	ACTGG	2 cut(s)	371, 628
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	373, 418
BseYI	CCCAGC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	570
BshNI	GGYRCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	2 cut(s)	18, 57
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	570
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	3 cut(s)	9, 373, 418
Bsp143I	GATC	7 cut(s)	42, 319, 334, 543, 637, 672, 727
BspACI	CCGC	2 cut(s)	147, 535
BspANI	GGCC	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	295, 372
BspPI	GGATC	2 cut(s)	538, 645
BspT107I	GGYRCC	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	371, 628
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	7 cut(s)	42, 319, 334, 543, 637, 672, 727
BssT1I	CCWWGG	1 cut(s)	524
Bst4CI	ACNGT	4 cut(s)	51, 429, 578, 712
Bst6I	CTCTTC	2 cut(s)	111, 183
BstC8I	GCNNGC	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	510, 603
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	7 cut(s)	45, 322, 337, 546, 640, 675, 730
BstMAI	GTCTC	2 cut(s)	18, 57
BstMBI	GATC	7 cut(s)	42, 319, 334, 543, 637, 672, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	758
BstSLI	GKGCMC	2 cut(s)	373, 418
BstUI	CGCG	1 cut(s)	159
BstX2I	RGATCY	3 cut(s)	543, 637, 727
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	3 cut(s)	543, 637, 727
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	2 cut(s)	510, 603
BtsIMutI	CAGTG	2 cut(s)	574, 621
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	294, 569
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	4 cut(s)	220, 612, 678, 713
CviAII	CATG	5 cut(s)	10, 172, 247, 437, 539
CviJI	RGCY	6 cut(s)	7, 87, 226, 570, 628, 757
CviKI_1	RGCY	6 cut(s)	7, 87, 226, 570, 628, 757
CviQI	GTAC	4 cut(s)	220, 612, 678, 713
DpnI	GATC	7 cut(s)	44, 321, 336, 545, 639, 674, 729
DpnII	GATC	7 cut(s)	42, 319, 334, 543, 637, 672, 727
DraIII	CACNNNGTG	1 cut(s)	422
Eam1104I	CTCTTC	2 cut(s)	111, 183
EarI	CTCTTC	2 cut(s)	111, 183
EciI	GGCGGA	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	524
EcoT22I	ATGCAT	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	524
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	5 cut(s)	13, 175, 250, 440, 542
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	5 cut(s)	9, 171, 246, 436, 538
FbaI	TGATCA	2 cut(s)	319, 672
FokI	GGATG	2 cut(s)	497, 610
FriOI	GRGCYC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	570
HgaI	GACGC	1 cut(s)	538
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	5 cut(s)	13, 175, 250, 440, 542
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	5 cut(s)	96, 251, 311, 468, 722
HphI	GGTGA	2 cut(s)	254, 700
Hpy166II	GTNNAC	3 cut(s)	163, 425, 581
Hpy188I	TCNGA	6 cut(s)	213, 260, 316, 499, 721, 727
Hpy188III	TCNNGA	4 cut(s)	91, 191, 323, 606
Hpy8I	GTNNAC	3 cut(s)	163, 425, 581
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	560
HpyCH4III	ACNGT	4 cut(s)	51, 429, 578, 712
HpyCH4IV	ACGT	3 cut(s)	130, 231, 456
HpyCH4V	TGCA	1 cut(s)	399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpySE526I	ACGT	3 cut(s)	130, 231, 456
Hsp92II	CATG	5 cut(s)	13, 175, 250, 440, 542
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	2 cut(s)	319, 672
Kzo9I	GATC	7 cut(s)	42, 319, 334, 543, 637, 672, 727
LmnI	GCTCC	2 cut(s)	4, 149
LpnPI	CCDG	9 cut(s)	95, 240, 308, 352, 387, 389, 396, 591, 609
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	3 cut(s)	130, 231, 456
MaeIII	GTNAC	2 cut(s)	242, 362
MalI	GATC	7 cut(s)	44, 321, 336, 545, 639, 674, 729
MboI	GATC	7 cut(s)	42, 319, 334, 543, 637, 672, 727
MboII	GAAGA	5 cut(s)	98, 170, 509, 512, 722
MflI	RGATCY	3 cut(s)	543, 637, 727
MhlI	GDGCHC	3 cut(s)	9, 373, 418
MluCI	AATT	3 cut(s)	275, 303, 486
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	31, 44, 98, 114, 186, 198, 518, 582
Mph1103I	ATGCAT	1 cut(s)	401
MseI	TTAA	3 cut(s)	78, 237, 750
MslI	CAYNNNNRTG	5 cut(s)	345, 358, 455, 537, 596
Mva1269I	GAATGC	1 cut(s)	399
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	7 cut(s)	42, 319, 334, 543, 637, 672, 727
NlaIII	CATG	5 cut(s)	13, 175, 250, 440, 542
NlaIV	GGNNCC	2 cut(s)	295, 372
NmuCI	GTSAC	2 cut(s)	242, 362
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	1 cut(s)	399
PfeI	GAWTC	4 cut(s)	96, 311, 468, 722
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	295, 372
PspPI	GGNCC	2 cut(s)	294, 569
PsuI	RGATCY	3 cut(s)	543, 637, 727
RsaI	GTAC	4 cut(s)	221, 613, 679, 714
RsaNI	GTAC	4 cut(s)	220, 612, 678, 713
RseI	CAYNNNNRTG	5 cut(s)	345, 358, 455, 537, 596
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	78, 237, 750
Sau3AI	GATC	7 cut(s)	42, 319, 334, 543, 637, 672, 727
Sau96I	GGNCC	2 cut(s)	294, 569
ScaI	AGTACT	2 cut(s)	613, 679
SchI	GAGTC	1 cut(s)	245
SduI	GDGCHC	3 cut(s)	9, 373, 418
SfaNI	GCATC	1 cut(s)	588
SfcI	CTRYAG	1 cut(s)	758
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	5 cut(s)	345, 358, 455, 537, 596
Sse9I	AATT	3 cut(s)	275, 303, 486
SsiI	CCGC	2 cut(s)	147, 535
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	4 cut(s)	51, 429, 578, 712
TaiI	ACGT	3 cut(s)	133, 234, 459
TaqI	TCGA	2 cut(s)	204, 466
TasI	AATT	3 cut(s)	275, 303, 486
TatI	WGTACW	2 cut(s)	611, 677
TfiI	GAWTC	4 cut(s)	96, 311, 468, 722
Tru1I	TTAA	3 cut(s)	78, 237, 750
Tru9I	TTAA	3 cut(s)	78, 237, 750
TscAI	CASTG	2 cut(s)	581, 628
TseFI	GTSAC	2 cut(s)	242, 362
Tsp45I	GTSAC	2 cut(s)	242, 362
TspDTI	ATGAA	2 cut(s)	324, 671
TspRI	CASTG	2 cut(s)	581, 628
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	2 cut(s)	613, 679
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.