Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004946

Physical Location & Seq

Genomic Coordinates Reverse (-)

3636967 .. 3638526

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1045100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCAATAGGAGCCACATCTGCGCAAGAAGGGATCAACTCTGGTAGATTCAGGAATCCAATCCCGCTGCCTAGGGTGTTTGGGCAAGAGCAGTTGTCAAGTACTTCGTTCAAGAACGAAACTGATGAATGTTTTATTGCGAAAAGGAAGCCTCATGAGGCCCATTCCGTTTTCAAGGGTTTAGCGGAAGAAGGACACAGGCCAACTCTTATAACCTACACAACTCTAGTAGCTGCTTTGACAGGCCAGAGGCGTTTCAAGTCTATTCCCTTGCTCCTCTCTGGTGGAGAGAATGGTATGAAGCCCGATTCATCACTTTTTAATGCCATGATCAATGCTTCCTCTGAATCTGGAAATATCAACGATGCCATAAAAATCTTTCAGAAAATGGAGAAGAGTGGATGTAAGCCCACAACCAGCATTTTTAATACTCTTATCAAAGGATATGGAATTGCTGGTAAACCTGAAGAATCTTTAAAACTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

163

Amino Acids

17.6

Weight (kDa)

9.33

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	98 - 131	6.2e-06	PPR repeat
PPR_3	PF13812	98 - 150	6.5e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	102 - 149	2e-11	PPR repeat family
PPR	PF01535	106 - 135	2.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25630 AT5G25630 AT5G25630
fragaria_vesca	FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130
malus_domestica	MD02G1045100.v1.1 MD08G1118600.v1.1 MD15G1097800.v1.1 MD15G1097900.v1.1
prunus_persica	Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1
pyrus_communis	pycom08g09890
rosa_chinensis	RchiOBHm_Chr6g0305741 RchiOBHm_Chr6g0306351
rosa_laevigata	RLG00000010863 RLG00000021840
rosa_roxburghii	Rroxscaffold_7G00162390
rosa_rugosa	Rorug06G0343700 Rorug06G0343800
rosa_samantha	Rh6AG455200 Rh6BG446100 Rh6CG469100 Rh6DG455700
rosa_wichuraiana	Rw6G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
Acc16I	TGCGCA	1 cut(s)	24
AciI	CCGC	2 cut(s)	65, 185
AclWI	GGATC	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	112, 175, 259
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	3 cut(s)	159, 200, 244
ApeKI	GCWGC	2 cut(s)	67, 233
AspA2I	CCTAGG	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	160
AvrII	CCTAGG	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	54, 220
BclI	TGATCA	1 cut(s)	330
BfaI	CTAG	2 cut(s)	72, 227
BisI	GCNGC	2 cut(s)	68, 234
BlnI	CCTAGG	1 cut(s)	71
BlsI	GCNGC	2 cut(s)	69, 235
BmcAI	AGTACT	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	54, 220
BshFI	GGCC	3 cut(s)	161, 202, 246
BsnI	GGCC	3 cut(s)	161, 202, 246
Bsp143I	GATC	2 cut(s)	33, 330
BspACI	CCGC	2 cut(s)	65, 185
BspANI	GGCC	3 cut(s)	161, 202, 246
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	2 cut(s)	33, 330
BssT1I	CCWWGG	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	36, 333
BstMBI	GATC	2 cut(s)	33, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	54, 220
BsuRI	GGCC	3 cut(s)	161, 202, 246
BtsCI	GGATG	1 cut(s)	407
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	2 cut(s)	155, 328
CviJI	RGCY	8 cut(s)	14, 151, 161, 202, 233, 246, 304, 409
CviKI_1	RGCY	8 cut(s)	14, 151, 161, 202, 233, 246, 304, 409
CviQI	GTAC	1 cut(s)	102
DpnI	GATC	2 cut(s)	35, 332
DpnII	GATC	2 cut(s)	33, 330
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	158, 331
FaiI	YATR	7 cut(s)	156, 212, 299, 329, 371, 447, 487
FatI	CATG	2 cut(s)	154, 327
FauI	CCCGC	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	68, 234
FokI	GGATG	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	68, 234
FspBI	CTAG	2 cut(s)	72, 227
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	68, 234
HaeIII	GGCC	3 cut(s)	161, 202, 246
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	158, 331
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	5 cut(s)	48, 55, 308, 347, 470
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	346, 384
Hpy188III	TCNNGA	4 cut(s)	52, 112, 155, 351
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	23, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	2 cut(s)	158, 331
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	33, 330
LmnI	GCTCC	2 cut(s)	11, 279
Lsp1109I	GCAGC	2 cut(s)	54, 220
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	72, 227
MalI	GATC	2 cut(s)	35, 332
MboI	GATC	2 cut(s)	33, 330
MboII	GAAGA	3 cut(s)	200, 406, 479
MluCI	AATT	1 cut(s)	450
MnlI	CCTC	5 cut(s)	151, 162, 243, 287, 352
MseI	TTAA	3 cut(s)	321, 426, 476
MspA1I	CMGCKG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	2 cut(s)	33, 330
NlaIII	CATG	2 cut(s)	158, 331
NlaIV	GGNNCC	1 cut(s)	13
NsbI	TGCGCA	1 cut(s)	24
PagI	TCATGA	1 cut(s)	154
PfeI	GAWTC	5 cut(s)	48, 55, 308, 347, 470
PkrI	GCNGC	2 cut(s)	69, 235
PsiI	TTATAA	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	160
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	321, 426, 476
SatI	GCNGC	2 cut(s)	68, 234
Sau3AI	GATC	2 cut(s)	33, 330
Sau96I	GGNCC	1 cut(s)	160
ScaI	AGTACT	1 cut(s)	103
SetI	ASST	3 cut(s)	218, 235, 466
SfaNI	GCATC	1 cut(s)	355
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	2 cut(s)	65, 185
SspMI	CTAG	2 cut(s)	72, 227
StyI	CCWWGG	1 cut(s)	71
TasI	AATT	1 cut(s)	450
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	5 cut(s)	48, 55, 308, 347, 470
Tru1I	TTAA	3 cut(s)	321, 426, 476
Tru9I	TTAA	3 cut(s)	321, 426, 476
TseI	GCWGC	2 cut(s)	67, 233
TspDTI	ATGAA	3 cut(s)	141, 300, 314
TspGWI	ACGGA	1 cut(s)	157
XmaJI	CCTAGG	1 cut(s)	71
XspI	CTAG	2 cut(s)	72, 227
ZrmI	AGTACT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.