Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004946

Physical Location & Seq

Genomic Coordinates Reverse (-)

49543879 .. 49545430

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0343800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGACAATATCTTCTCCATGGCTGCGGTCGTTGCCCTTCTCCAGACTCTTCAGGCAGCTGGAGCATGAGATGGAAACTGTGGTGACAGTGCTGCAACCTGGTCCGTTGGGAATTGTAGAACACAAGTTTTCTGCTGAGGAGATACGTAAGGCAAATGCTACTGTTCAAAGGGCAGTGCAGAAATGGCAACAGAATGCAATCCTAGAGAAGAGAAGTCGCATCTTAGAAGAGTATATACAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

81

Amino Acids

9.52

Weight (kDa)

9.69

Isoelectric Point (pI)

69.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25630 AT5G25630 AT5G25630
fragaria_vesca	FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130
malus_domestica	MD02G1045100.v1.1 MD08G1118600.v1.1 MD15G1097800.v1.1 MD15G1097900.v1.1
prunus_persica	Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1
pyrus_communis	pycom08g09890
rosa_chinensis	RchiOBHm_Chr6g0305741 RchiOBHm_Chr6g0306351
rosa_laevigata	RLG00000010863 RLG00000021840
rosa_roxburghii	Rroxscaffold_7G00162390
rosa_rugosa	Rorug06G0343700 Rorug06G0343800
rosa_samantha	Rh6AG455200 Rh6BG446100 Rh6CG469100 Rh6DG455700
rosa_wichuraiana	Rw6G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	22, 55, 91
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	101
BarI	GAAGNNNNNNTAC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	9, 67, 78
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	99
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	23, 56, 92
BlsI	GCNGC	3 cut(s)	24, 57, 93
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	228
BpmI	CTGGAG	2 cut(s)	25, 80
Bpu10I	CCTNAGC	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	9, 67, 78
BsgI	GTGCAG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	79, 88, 163
Bst6I	CTCTTC	3 cut(s)	53, 203, 222
BstBAI	YACGTR	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	135, 223
BstDSI	CCRYGG	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 61, 184
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSNI	TACGTA	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	9, 67, 78
BtgI	CCRYGG	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	93, 180
Cfr13I	GGNCC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	97
CviAII	CATG	2 cut(s)	18, 65
CviJI	RGCY	2 cut(s)	22, 58
CviKI_1	RGCY	2 cut(s)	22, 58
DdeI	CTNAG	2 cut(s)	135, 223
Eam1104I	CTCTTC	3 cut(s)	53, 203, 222
EarI	CTCTTC	3 cut(s)	53, 203, 222
Eco105I	TACGTA	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	21, 68
FaiI	YATR	4 cut(s)	19, 66, 234, 236
FatI	CATG	2 cut(s)	17, 64
Fnu4HI	GCNGC	3 cut(s)	23, 56, 92
Fsp4HI	GCNGC	3 cut(s)	23, 56, 92
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	3 cut(s)	23, 56, 92
GsuI	CTGGAG	2 cut(s)	25, 80
Hin1II	CATG	2 cut(s)	21, 68
HinfI	GANTC	1 cut(s)	45
HphI	GGTGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	79, 88, 163
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	3 cut(s)	94, 178, 197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 61, 184
HpyF3I	CTNAG	2 cut(s)	135, 223
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	21, 68
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	5 cut(s)	37, 44, 55, 84, 111
Lsp1109I	GCAGC	3 cut(s)	9, 67, 78
LweI	GCATC	1 cut(s)	228
MabI	ACCWGGT	1 cut(s)	97
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	4 cut(s)	3, 40, 220, 239
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	130
MspA1I	CMGCKG	1 cut(s)	58
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	31, 61, 184
NcoI	CCATGG	1 cut(s)	17
NlaIII	CATG	2 cut(s)	21, 68
NmuCI	GTSAC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	24, 57, 93
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	58
SatI	GCNGC	3 cut(s)	23, 56, 92
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	3 cut(s)	60, 100, 148
SexAI	ACCWGGT	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	228
SgeI	CNNG	9 cut(s)	30, 54, 64, 71, 77, 110, 111, 136, 215
SinI	GGWCC	1 cut(s)	101
SnaBI	TACGTA	1 cut(s)	146
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	3 cut(s)	79, 88, 163
TaiI	ACGT	1 cut(s)	148
TasI	AATT	1 cut(s)	111
TscAI	CASTG	2 cut(s)	93, 180
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	22, 55, 91
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	93, 180
VpaK11BI	GGWCC	1 cut(s)	101
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.