Rroxscaffold_7G00162390

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004946
Physical Location & Seq
Reverse (-)
4913417 .. 4916794
3378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162390.1

Sequence Viewer

Length: 1911 bp
ATGACCCATATGGGAGAATGGAGTAAGGTGAATTCTTTTTCTAGAGCAAATAAAAGAAGTGAAGAAGCAACTATTACAAATGGACGTGTTCAATCGCTACCAATCAAGGAAATTTATCCGGATGATAATAATCAATTGCATCTAGATTCAAAGTCATTAGATTCATTGAGTCAGCCCCATTGCCTTGTATGCATGAACAAAGAAAGTTGCCGAATTGTGCGTTCAAGAACAAAACTAATGAACACATTAATAGAAAGGGGGAAGCTGCAGGAGGTCCAGTCCATTTTCAATGCTTTAATTGAAGAAGGACACAGACCATCATTGATATCCTACACTACCTTCCTGACTGCCTTGACGATCCAGAAGCACTTCGAGTCCATTCCTTCGGTTATATCACAGGTGGAAGAGAATGGTATGAAGCCTGATTCGATATTTTTCAATGCTGTTATTAATGCTTTTTCTGAAGCTGGGAAAATGGAGGAAGCCATGGACACAGTTCAGAAGATGAAGGAGAGTGGATTGAAACCCACTACTAGCACTTACAATACATTGATCAAAGGGTATGGGATTTCGGGTAAGCCTGAAGAGTCCTTGAAACTGCTTGAGATGATGTCCGGCGAGGAAAATGTGAGACCAAATATAAGGACTTTTAATGTACTAGTGAGGGCATGGTGTAAGAAGAAGAACATTTTGGAGGCATGGAATGTGGTGCATAAGATCGTAGCCTCTGGAATGCAACCTGATGCTGTTACTTACAACACATTAGCAACAGCTTATGCTCAAAATGGAGAAACATGTCAGGCCGAAGGTTTGATTGTTGAGATGCAGAACAATAGAGTGCAACCGAATGATAGAACTTGTGGCATCATCATAGGTGGGTATTGTAAAGAAGGTAAACTGAAGGAGGCCTTAAGGTTTATGCACAGGAAAGATCTTGGACTGCGTCCTAACGTTGTTGTCTTTAACTCACTGGTTAAGGGTTTTGTTGACACCATGGATAGAGACGGGGTTGATCAGGTCCTGAAGTTGATGAAAGATTTCGGGGTTAAACCGGATGTTATAACATATAGCACCATCATGAATGCATGGAGCTCAGCAGGATTCATGGAGAAGTGTAGGGAAATCTTTGATGACATGGTGAAGGCTGGCATAAAACCTGATGGGCATGTGTACAGCATTCTTGCTAAAGGTTATGTCCGAAATCAAGAAGTAGAGAAAGCCGAAGAGCTGTTGATAGCCATGATTAAAGCAGGAGTTCATCCAAACGTTGTGATTTTCACGACCATCATGAGTGGATGGTGCAGTTCTGGCAGAATGGAGCATGCAATCAAAGTTTTTGATAAAATGTGTGAATTTAGCATTTCTCCCAATTTGAAGACATTTGAGACCCTGATATGGGGATTTGGAGAAGCAAAGCTGCCGTGGAAAGCTGAAGAAATACTCCAGATTATGAAGGAGTTTGGTGTTCAGCCAGAGAAATCTACTGTCTTGCTTGTTGCAGATGCTTGGCGTTCAATTGGATTAACAAAAGAGGCAAATAGGATGCTGGGTGTTCTGAAAACTAAAGAAAAGACCAACCAGGTGAAAACAGAAGAGATGCCCTTTGAGAGCTTGGAGAAAATTTATCGAAAGAAATCTGCTAATGCCTATCAGCCCAATATTCTCCAGATACCACCAGTAGTTACAAATGATCAAAAAGGGCCAGCTTCAGCAACTAGGAAGGGCACAATGATGATGAGAGATGGTGATTTTTCTTTAGAGATCTCATCACTTGCTGCAAAATCTATGAATCTGTCTCATACTTGTAAATTTGGGGAAAGATTGCCGATCATATGCCAGAAGCAGTCTCGTGGGCAGCTTGGTGTGTATGGTCAGTTTCCACAGTCATGTACAGTTGTGTTCTTGAACTGA

Protein Analysis

636

Amino Acids

71.43

Weight (kDa)

8.73

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 95 - 153 9.9e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 129 - 234 1.2e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 130 - 189 3.1e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 141 - 188 3.6e-14 PPR repeat family
PPR PF01535 146 - 174 4.8e-06 PPR repeat
PPR_1 PF12854 173 - 204 6.1e-07 PPR repeat
PPR_2 PF13041 176 - 226 2.3e-10 PPR repeat family
PPR PF01535 179 - 205 1.9e-06 PPR repeat
PPR_2 PF13041 212 - 260 1.3e-10 PPR repeat family
PPR_3 PF13812 236 - 294 8.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 247 - 296 6.8e-11 PPR repeat family
PPR_2 PF13041 286 - 329 4.8e-07 PPR repeat family
PPR_long PF17177 308 - 394 4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 310 - 363 2.1e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 316 - 362 9.2e-09 PPR repeat family
PPR_2 PF13041 351 - 399 1.2e-11 PPR repeat family
PPR_long PF17177 371 - 453 5.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 375 - 431 5.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 418 - 449 1.5e-10 PPR repeat
PPR_3 PF13812 418 - 469 5.5e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 421 - 468 6.6e-13 PPR repeat family
PPR PF01535 424 - 452 8.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1061
AccIII TCCGGA 1 cut(s) 118
AclI AACGTT 2 cut(s) 951, 1266
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 5 cut(s) 31, 111, 1352, 1620, 1808
AcuI CTGAAG 6 cut(s) 483, 603, 920, 1043, 1452, 1692
AfaI GTAC 3 cut(s) 657, 1172, 1891
AfiI CCNNNNNNNGG 2 cut(s) 1395, 1396
AflII CTTAAG 1 cut(s) 910
AflIII ACRYGT 2 cut(s) 85, 794
AhlI ACTAGT 1 cut(s) 658
AjiI CACGTC 1 cut(s) 86
AjnI CCWGG 1 cut(s) 1578
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
Alw21I GWGCWC 1 cut(s) 1094
Alw26I GTCTC 5 cut(s) 625, 996, 1379, 1800, 1851
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 1021
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 3 cut(s) 801, 906, 1700
ApeKI GCWGC 4 cut(s) 265, 1417, 1775, 1855
ApoI RAATTY 5 cut(s) 31, 111, 1352, 1620, 1808
AseI ATTAAT 2 cut(s) 248, 450
Asp700I GAANNNNTTC 2 cut(s) 368, 1037
AspS9I GGNCC 3 cut(s) 274, 1018, 1700
AsuHPI GGTGA 4 cut(s) 40, 1150, 1594, 1757
AvaII GGWCC 2 cut(s) 274, 1018
BaeGI GKGCMC 1 cut(s) 1727
BanII GRGCYC 1 cut(s) 1094
BauI CACGAG 1 cut(s) 1848
BbsI GAAGAC 1 cut(s) 1382
Bbv12I GWGCWC 1 cut(s) 1094
BbvI GCAGC 4 cut(s) 252, 1404, 1762, 1867
BccI CCATC 6 cut(s) 325, 1082, 1154, 1290, 1292, 1736
BceAI ACGGC 1 cut(s) 1405
BciT130I CCWGG 1 cut(s) 1580
BclI TGATCA 3 cut(s) 552, 1012, 1690
BcoDI GTCTC 5 cut(s) 625, 996, 1379, 1800, 1851
BcuI ACTAGT 1 cut(s) 658
BfaI CTAG 5 cut(s) 42, 143, 534, 659, 1716
BfmI CTRYAG 1 cut(s) 266
BfrI CTTAAG 1 cut(s) 910
BglII AGATCT 2 cut(s) 931, 1761
BisI GCNGC 4 cut(s) 266, 1418, 1776, 1856
BlpI GCTNAGC 1 cut(s) 1093
BlsI GCNGC 4 cut(s) 267, 1419, 1777, 1857
Bme1390I CCNGG 1 cut(s) 1580
Bme18I GGWCC 2 cut(s) 274, 1018
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 3 cut(s) 274, 1018, 1700
BmrFI CCNGG 1 cut(s) 1580
BmsI GCATC 7 cut(s) 148, 733, 813, 873, 1492, 1533, 1587
BpiI GAAGAC 1 cut(s) 1382
BpmI CTGGAG 2 cut(s) 1427, 1649
Bpu1102I GCTNAGC 1 cut(s) 1093
BpuEI CTTGAG 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 625, 1379
BsaJI CCNNGG 3 cut(s) 486, 993, 1421
BsaWI WCCGGW 2 cut(s) 118, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 1395, 1396
Bse1I ACTGG 3 cut(s) 277, 975, 1676
Bse3DI GCAATG 1 cut(s) 178
Bse8I GATNNNNATC 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 1580
BseDI CCNNGG 3 cut(s) 486, 993, 1421
BseGI GGATG 5 cut(s) 127, 1060, 1258, 1301, 1548
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 1395, 1396
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 1107
BseNI ACTGG 3 cut(s) 277, 975, 1676
BseSI GKGCMC 1 cut(s) 1727
BseXI GCAGC 4 cut(s) 252, 1404, 1762, 1867
BseYI CCCAGC 2 cut(s) 467, 1546
BsgI GTGCAG 1 cut(s) 1321
BshFI GGCC 3 cut(s) 803, 908, 1702
BsiHKAI GWGCWC 1 cut(s) 1094
BsiSI CCGG 3 cut(s) 119, 615, 1052
BslI CCNNNNNNNGG 2 cut(s) 1395, 1396
BsmAI GTCTC 5 cut(s) 625, 996, 1379, 1800, 1851
BsmBI CGTCTC 1 cut(s) 996
BsmI GAATGC 3 cut(s) 738, 1087, 1176
BsnI GGCC 3 cut(s) 803, 908, 1702
Bso31I GGTCTC 2 cut(s) 625, 1379
Bsp1286I GDGCHC 2 cut(s) 1094, 1727
Bsp13I TCCGGA 1 cut(s) 118
Bsp1407I TGTACA 2 cut(s) 1170, 1889
Bsp143I GATC 8 cut(s) 357, 552, 717, 931, 1012, 1690, 1761, 1827
Bsp1720I GCTNAGC 1 cut(s) 1093
Bsp19I CCATGG 2 cut(s) 486, 993
BspANI GGCC 3 cut(s) 803, 908, 1702
BspCNI CTCAG 1 cut(s) 1106
BspEI TCCGGA 1 cut(s) 118
BspHI TCATGA 2 cut(s) 1077, 1287
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 1 cut(s) 352
BspQI GCTCTTC 1 cut(s) 1218
BspTI CTTAAG 1 cut(s) 910
BspTNI GGTCTC 2 cut(s) 625, 1379
BsrDI GCAATG 1 cut(s) 178
BsrGI TGTACA 2 cut(s) 1170, 1889
BsrI ACTGG 3 cut(s) 277, 975, 1676
BssECI CCNNGG 3 cut(s) 486, 993, 1421
BssMI GATC 8 cut(s) 357, 552, 717, 931, 1012, 1690, 1761, 1827
BssSI CACGAG 1 cut(s) 1848
BssT1I CCWWGG 2 cut(s) 486, 993
Bst2BI CACGAG 1 cut(s) 1848
Bst2UI CCWGG 1 cut(s) 1580
Bst4CI ACNGT 4 cut(s) 496, 1486, 1884, 1894
Bst6I CTCTTC 4 cut(s) 399, 579, 1218, 1587
BstAFI CTTAAG 1 cut(s) 910
BstAUI TGTACA 2 cut(s) 1170, 1889
BstC8I GCNNGC 3 cut(s) 1147, 1323, 1704
BstDEI CTNAG 1 cut(s) 1093
BstDSI CCRYGG 3 cut(s) 486, 993, 1421
BstF5I GGATG 5 cut(s) 127, 1060, 1258, 1301, 1548
BstKTI GATC 8 cut(s) 360, 555, 720, 934, 1015, 1693, 1764, 1830
BstMAI GTCTC 5 cut(s) 625, 996, 1379, 1800, 1851
BstMBI GATC 8 cut(s) 357, 552, 717, 931, 1012, 1690, 1761, 1827
BstMWI GCNNNNNNNGC 2 cut(s) 189, 1308
BstNI CCWGG 1 cut(s) 1580
BstNSI RCATGY 3 cut(s) 798, 1169, 1325
BstSCI CCNGG 1 cut(s) 1578
BstSFI CTRYAG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 1727
BstV1I GCAGC 4 cut(s) 252, 1404, 1762, 1867
BstV2I GAAGAC 1 cut(s) 1382
BstX2I RGATCY 2 cut(s) 931, 1761
BstYI RGATCY 2 cut(s) 931, 1761
BsuRI GGCC 3 cut(s) 803, 908, 1702
BtgI CCRYGG 3 cut(s) 486, 993, 1421
BtrI CACGTC 1 cut(s) 86
BtsCI GGATG 5 cut(s) 127, 1060, 1258, 1301, 1548
BtsIMutI CAGTG 1 cut(s) 968
Cac8I GCNNGC 3 cut(s) 1147, 1323, 1704
CaiI CAGNNNCTG 1 cut(s) 1021
CciI TCATGA 2 cut(s) 1077, 1287
Cfr13I GGNCC 3 cut(s) 274, 1018, 1700
CseI GACGC 1 cut(s) 932
CsiI ACCWGGT 1 cut(s) 1578
Csp6I GTAC 3 cut(s) 656, 1171, 1890
CviQI GTAC 3 cut(s) 656, 1171, 1890
DdeI CTNAG 1 cut(s) 1093
DpnI GATC 8 cut(s) 359, 554, 719, 933, 1014, 1692, 1763, 1829
DpnII GATC 8 cut(s) 357, 552, 717, 931, 1012, 1690, 1761, 1827
Eam1104I CTCTTC 4 cut(s) 399, 579, 1218, 1587
EarI CTCTTC 4 cut(s) 399, 579, 1218, 1587
Ecl136II GAGCTC 1 cut(s) 1092
Eco130I CCWWGG 2 cut(s) 486, 993
Eco147I AGGCCT 1 cut(s) 908
Eco24I GRGCYC 1 cut(s) 1094
Eco31I GGTCTC 2 cut(s) 625, 1379
Eco32I GATATC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 274, 1018
Eco53kI GAGCTC 1 cut(s) 1092
Eco57I CTGAAG 6 cut(s) 483, 603, 920, 1043, 1452, 1692
EcoICRI GAGCTC 1 cut(s) 1092
EcoO109I RGGNCCY 1 cut(s) 1018
EcoRI GAATTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 1578
EcoRV GATATC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 486, 993
EcoT22I ATGCAT 2 cut(s) 194, 1087
EcoT38I GRGCYC 1 cut(s) 1094
ErhI CCWWGG 2 cut(s) 486, 993
Esp3I CGTCTC 1 cut(s) 996
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FauNDI CATATG 2 cut(s) 9, 1832
FbaI TGATCA 3 cut(s) 552, 1012, 1690
Fnu4HI GCNGC 4 cut(s) 266, 1418, 1776, 1856
FokI GGATG 5 cut(s) 134, 1067, 1245, 1308, 1555
FriOI GRGCYC 1 cut(s) 1094
Fsp4HI GCNGC 4 cut(s) 266, 1418, 1776, 1856
FspBI CTAG 5 cut(s) 42, 143, 534, 659, 1716
GluI GCNGC 4 cut(s) 266, 1418, 1776, 1856
GsaI CCCAGC 2 cut(s) 471, 1550
GsuI CTGGAG 2 cut(s) 1427, 1649
HaeIII GGCC 3 cut(s) 803, 908, 1702
HapII CCGG 3 cut(s) 119, 615, 1052
HgaI GACGC 1 cut(s) 932
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HinfI GANTC 8 cut(s) 146, 161, 169, 374, 425, 587, 1101, 1789
HpaII CCGG 3 cut(s) 119, 615, 1052
HphI GGTGA 4 cut(s) 40, 1150, 1594, 1757
Hpy166II GTNNAC 3 cut(s) 896, 988, 1171
Hpy188I TCNGA 4 cut(s) 463, 501, 1199, 1557
Hpy8I GTNNAC 3 cut(s) 896, 988, 1171
HpyCH4III ACNGT 4 cut(s) 496, 1486, 1884, 1894
HpyCH4IV ACGT 3 cut(s) 85, 951, 1266
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 1308
HpyF3I CTNAG 1 cut(s) 1093
HpySE526I ACGT 3 cut(s) 85, 951, 1266
Kpn2I TCCGGA 1 cut(s) 118
Ksp22I TGATCA 3 cut(s) 552, 1012, 1690
Kzo9I GATC 8 cut(s) 357, 552, 717, 931, 1012, 1690, 1761, 1827
LguI GCTCTTC 1 cut(s) 1218
LmnI GCTCC 2 cut(s) 1089, 1318
Lsp1109I GCAGC 4 cut(s) 252, 1404, 1762, 1867
LweI GCATC 7 cut(s) 148, 733, 813, 873, 1492, 1533, 1587
MabI ACCWGGT 1 cut(s) 1578
MaeI CTAG 5 cut(s) 42, 143, 534, 659, 1716
MaeII ACGT 3 cut(s) 85, 951, 1266
MaeIII GTNAC 2 cut(s) 748, 1681
MalI GATC 8 cut(s) 359, 554, 719, 933, 1014, 1692, 1763, 1829
MboI GATC 8 cut(s) 357, 552, 717, 931, 1012, 1690, 1761, 1827
MfeI CAATTG 2 cut(s) 134, 1515
MflI RGATCY 2 cut(s) 931, 1761
MhlI GDGCHC 2 cut(s) 1094, 1727
MlyI GAGTC 3 cut(s) 178, 383, 596
MnlI CCTC 8 cut(s) 265, 472, 613, 657, 688, 736, 898, 1525
Mph1103I ATGCAT 2 cut(s) 194, 1087
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 2 cut(s) 368, 1037
MslI CAYNNNNRTG 3 cut(s) 1076, 1730, 1885
MspCI CTTAAG 1 cut(s) 910
MspI CCGG 3 cut(s) 119, 615, 1052
MspR9I CCNGG 1 cut(s) 1580
MunI CAATTG 2 cut(s) 134, 1515
Mva1269I GAATGC 3 cut(s) 738, 1087, 1176
MvaI CCWGG 1 cut(s) 1580
MwoI GCNNNNNNNGC 2 cut(s) 189, 1308
NcoI CCATGG 2 cut(s) 486, 993
NdeI CATATG 2 cut(s) 9, 1832
NdeII GATC 8 cut(s) 357, 552, 717, 931, 1012, 1690, 1761, 1827
NsiI ATGCAT 2 cut(s) 194, 1087
NspI RCATGY 3 cut(s) 798, 1169, 1325
PaeI GCATGC 1 cut(s) 1325
PagI TCATGA 2 cut(s) 1077, 1287
PceI AGGCCT 1 cut(s) 908
PciI ACATGT 1 cut(s) 794
PciSI GCTCTTC 1 cut(s) 1218
PctI GAATGC 3 cut(s) 738, 1087, 1176
PdmI GAANNNNTTC 2 cut(s) 368, 1037
PfeI GAWTC 5 cut(s) 146, 161, 425, 1101, 1789
PflFI GACNNNGTC 1 cut(s) 942
PkrI GCNGC 4 cut(s) 267, 1419, 1777, 1857
PleI GAGTC 3 cut(s) 177, 382, 595
PpsI GAGTC 3 cut(s) 177, 382, 595
PpuMI RGGWCCY 1 cut(s) 1018
PscI ACATGT 1 cut(s) 794
PshBI ATTAAT 2 cut(s) 248, 450
PsiI TTATAA 1 cut(s) 1061
Psp124BI GAGCTC 1 cut(s) 1094
Psp1406I AACGTT 2 cut(s) 951, 1266
Psp5II RGGWCCY 1 cut(s) 1018
Psp6I CCWGG 1 cut(s) 1578
PspFI CCCAGC 2 cut(s) 467, 1546
PspGI CCWGG 1 cut(s) 1578
PspPI GGNCC 3 cut(s) 274, 1018, 1700
PspPPI RGGWCCY 1 cut(s) 1018
PstI CTGCAG 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 1021
PsuI RGATCY 2 cut(s) 931, 1761
PsyI GACNNNGTC 1 cut(s) 942
RsaI GTAC 3 cut(s) 657, 1172, 1891
RsaNI GTAC 3 cut(s) 656, 1171, 1890
RseI CAYNNNNRTG 3 cut(s) 1076, 1730, 1885
SacI GAGCTC 1 cut(s) 1094
SapI GCTCTTC 1 cut(s) 1218
SatI GCNGC 4 cut(s) 266, 1418, 1776, 1856
Sau3AI GATC 8 cut(s) 357, 552, 717, 931, 1012, 1690, 1761, 1827
Sau96I GGNCC 3 cut(s) 274, 1018, 1700
SchI GAGTC 3 cut(s) 178, 383, 596
ScrFI CCNGG 1 cut(s) 1580
SduI GDGCHC 2 cut(s) 1094, 1727
SexAI ACCWGGT 1 cut(s) 1578
SfaNI GCATC 7 cut(s) 148, 733, 813, 873, 1492, 1533, 1587
SfcI CTRYAG 1 cut(s) 266
SinI GGWCC 2 cut(s) 274, 1018
SmiMI CAYNNNNRTG 3 cut(s) 1076, 1730, 1885
SmlI CTYRAG 2 cut(s) 602, 910
SmoI CTYRAG 2 cut(s) 602, 910
SpeI ACTAGT 1 cut(s) 658
SphI GCATGC 1 cut(s) 1325
SseBI AGGCCT 1 cut(s) 908
SspI AATATT 1 cut(s) 1660
SspMI CTAG 5 cut(s) 42, 143, 534, 659, 1716
SstI GAGCTC 1 cut(s) 1094
StuI AGGCCT 1 cut(s) 908
StyD4I CCNGG 1 cut(s) 1578
StyI CCWWGG 2 cut(s) 486, 993
TaaI ACNGT 4 cut(s) 496, 1486, 1884, 1894
TaiI ACGT 3 cut(s) 88, 954, 1269
TaqI TCGA 3 cut(s) 372, 428, 1627
TatI WGTACW 3 cut(s) 655, 1170, 1889
TfiI GAWTC 5 cut(s) 146, 161, 425, 1101, 1789
TscAI CASTG 1 cut(s) 975
TseI GCWGC 4 cut(s) 265, 1417, 1775, 1855
TspRI CASTG 1 cut(s) 975
Tth111I GACNNNGTC 1 cut(s) 942
Vha464I CTTAAG 1 cut(s) 910
VpaK11BI GGWCC 2 cut(s) 274, 1018
VspI ATTAAT 2 cut(s) 248, 450
XapI RAATTY 5 cut(s) 31, 111, 1352, 1620, 1808
XbaI TCTAGA 2 cut(s) 41, 142
XceI RCATGY 3 cut(s) 798, 1169, 1325
XmnI GAANNNNTTC 2 cut(s) 368, 1037
XspI CTAG 5 cut(s) 42, 143, 534, 659, 1716
Zsp2I ATGCAT 2 cut(s) 194, 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.