Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25630 AT5G25630 AT5G25630 |
| fragaria_vesca | FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 |
| malus_domestica | MD02G1045100.v1.1 MD08G1118600.v1.1 MD15G1097800.v1.1 MD15G1097900.v1.1 |
| prunus_persica | Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1 |
| pyrus_communis | pycom08g09890 |
| rosa_chinensis | RchiOBHm_Chr6g0305741 RchiOBHm_Chr6g0306351 |
| rosa_laevigata | RLG00000010863 RLG00000021840 |
| rosa_roxburghii | Rroxscaffold_7G00162390 |
| rosa_rugosa | Rorug06G0343700 Rorug06G0343800 |
| rosa_samantha | Rh6AG455200 Rh6BG446100 Rh6CG469100 Rh6DG455700 |
| rosa_wichuraiana | Rw6G039710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 446, 540 |
| Acc65I | GGTACC | 1 cut(s) | 1594 |
| AccB1I | GGYRCC | 1 cut(s) | 1594 |
| AclWI | GGATC | 1 cut(s) | 1705 |
| AcoI | YGGCCR | 1 cut(s) | 192 |
| AcsI | RAATTY | 4 cut(s) | 1034, 1356, 1617, 1808 |
| AcuI | CTGAAG | 5 cut(s) | 600, 914, 1040, 1239, 1449 |
| AfaI | GTAC | 3 cut(s) | 329, 1596, 1891 |
| AfeI | AGCGCT | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 104, 1392, 1393 |
| AflII | CTTAAG | 2 cut(s) | 493, 904 |
| AgsI | TTSAA | 7 cut(s) | 89, 147, 299, 436, 1372, 1583, 1906 |
| AluBI | AGCT | 6 cut(s) | 344, 1217, 1414, 1427, 1608, 1858 |
| AluI | AGCT | 6 cut(s) | 344, 1217, 1414, 1427, 1608, 1858 |
| Alw21I | GWGCWC | 2 cut(s) | 1091, 1201 |
| Alw26I | GTCTC | 5 cut(s) | 253, 779, 1376, 1734, 1800 |
| AlwI | GGATC | 1 cut(s) | 1705 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1018 |
| Ama87I | CYCGRG | 1 cut(s) | 599 |
| Aor51HI | AGCGCT | 1 cut(s) | 365 |
| AoxI | GGCC | 3 cut(s) | 192, 311, 900 |
| ApeKI | GCWGC | 6 cut(s) | 344, 937, 1232, 1414, 1775, 1855 |
| ApoI | RAATTY | 4 cut(s) | 1034, 1356, 1617, 1808 |
| Asp718I | GGTACC | 1 cut(s) | 1594 |
| AspLEI | GCGC | 1 cut(s) | 366 |
| AsuHPI | GGTGA | 2 cut(s) | 1147, 1757 |
| AvaI | CYCGRG | 1 cut(s) | 599 |
| AxyI | CCTNAGG | 1 cut(s) | 264 |
| BalI | TGGCCA | 1 cut(s) | 194 |
| BanI | GGYRCC | 1 cut(s) | 1594 |
| BbsI | GAAGAC | 3 cut(s) | 1379, 1574, 1732 |
| Bbv12I | GWGCWC | 2 cut(s) | 1091, 1201 |
| BbvI | GCAGC | 6 cut(s) | 331, 924, 1244, 1401, 1762, 1867 |
| BccI | CCATC | 9 cut(s) | 107, 362, 706, 995, 1021, 1079, 1287, 1289, 1678 |
| BceAI | ACGGC | 1 cut(s) | 725 |
| BclI | TGATCA | 2 cut(s) | 549, 1687 |
| BcoDI | GTCTC | 5 cut(s) | 253, 779, 1376, 1734, 1800 |
| BfaI | CTAG | 5 cut(s) | 228, 341, 656, 812, 1716 |
| BfoI | RGCGCY | 1 cut(s) | 367 |
| BfrI | CTTAAG | 2 cut(s) | 493, 904 |
| BglII | AGATCT | 1 cut(s) | 928 |
| BisI | GCNGC | 6 cut(s) | 345, 938, 1233, 1415, 1776, 1856 |
| BlsI | GCNGC | 6 cut(s) | 346, 939, 1234, 1416, 1777, 1857 |
| BmeT110I | CYCGRG | 1 cut(s) | 599 |
| BmiI | GGNNCC | 1 cut(s) | 1596 |
| BmrI | ACTGGG | 1 cut(s) | 268 |
| BmsI | GCATC | 5 cut(s) | 727, 807, 949, 1489, 1530 |
| BmuI | ACTGGG | 1 cut(s) | 268 |
| BpiI | GAAGAC | 3 cut(s) | 1379, 1574, 1732 |
| BpmI | CTGGAG | 1 cut(s) | 1424 |
| BpuEI | CTTGAG | 1 cut(s) | 1185 |
| BsaI | GGTCTC | 2 cut(s) | 253, 1376 |
| BsaJI | CCNNGG | 3 cut(s) | 483, 990, 1418 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 104, 1392, 1393 |
| Bse1I | ACTGG | 4 cut(s) | 274, 324, 972, 1734 |
| Bse21I | CCTNAGG | 1 cut(s) | 264 |
| Bse3DI | GCAATG | 1 cut(s) | 1892 |
| BseDI | CCNNGG | 3 cut(s) | 483, 990, 1418 |
| BseGI | GGATG | 6 cut(s) | 112, 354, 940, 1298, 1545, 1648 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 104, 1392, 1393 |
| BseMI | GCAATG | 1 cut(s) | 1892 |
| BseMII | CTCAG | 3 cut(s) | 278, 1811, 1862 |
| BseNI | ACTGG | 4 cut(s) | 274, 324, 972, 1734 |
| BseXI | GCAGC | 6 cut(s) | 331, 924, 1244, 1401, 1762, 1867 |
| BseYI | CCCAGC | 1 cut(s) | 1543 |
| BsgI | GTGCAG | 1 cut(s) | 1318 |
| Bsh1285I | CGRYCG | 1 cut(s) | 221 |
| BshFI | GGCC | 3 cut(s) | 194, 313, 902 |
| BshNI | GGYRCC | 1 cut(s) | 1594 |
| BsiEI | CGRYCG | 1 cut(s) | 221 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1091, 1201 |
| BsiHKCI | CYCGRG | 1 cut(s) | 599 |
| BsiSI | CCGG | 2 cut(s) | 1095, 1837 |
| BslFI | GGGAC | 2 cut(s) | 262, 595 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 104, 1392, 1393 |
| BsmAI | GTCTC | 5 cut(s) | 253, 779, 1376, 1734, 1800 |
| BsmBI | CGTCTC | 1 cut(s) | 1734 |
| BsmFI | GGGAC | 2 cut(s) | 262, 595 |
| BsmI | GAATGC | 2 cut(s) | 1084, 1173 |
| BsnI | GGCC | 3 cut(s) | 194, 313, 902 |
| Bso31I | GGTCTC | 2 cut(s) | 253, 1376 |
| BsoBI | CYCGRG | 1 cut(s) | 599 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1091, 1201 |
| Bsp1407I | TGTACA | 1 cut(s) | 1889 |
| Bsp143I | GATC | 6 cut(s) | 218, 549, 928, 1009, 1687, 1697 |
| Bsp19I | CCATGG | 3 cut(s) | 483, 990, 1418 |
| BspANI | GGCC | 3 cut(s) | 194, 313, 902 |
| BspCNI | CTCAG | 3 cut(s) | 277, 1810, 1861 |
| BspHI | TCATGA | 2 cut(s) | 1074, 1284 |
| BspLI | GGNNCC | 1 cut(s) | 1596 |
| BspPI | GGATC | 1 cut(s) | 1705 |
| BspT107I | GGYRCC | 1 cut(s) | 1594 |
| BspTI | CTTAAG | 2 cut(s) | 493, 904 |
| BspTNI | GGTCTC | 2 cut(s) | 253, 1376 |
| BsrDI | GCAATG | 1 cut(s) | 1892 |
| BsrGI | TGTACA | 1 cut(s) | 1889 |
| BsrI | ACTGG | 4 cut(s) | 274, 324, 972, 1734 |
| BssECI | CCNNGG | 3 cut(s) | 483, 990, 1418 |
| BssMI | GATC | 6 cut(s) | 218, 549, 928, 1009, 1687, 1697 |
| BssT1I | CCWWGG | 3 cut(s) | 483, 990, 1418 |
| Bst4CI | ACNGT | 3 cut(s) | 1227, 1745, 1894 |
| Bst6I | CTCTTC | 2 cut(s) | 396, 1584 |
| BstAFI | CTTAAG | 2 cut(s) | 493, 904 |
| BstAUI | TGTACA | 1 cut(s) | 1889 |
| BstC8I | GCNNGC | 6 cut(s) | 1144, 1164, 1197, 1320, 1509, 1773 |
| BstDEI | CTNAG | 5 cut(s) | 264, 1609, 1736, 1797, 1848 |
| BstDSI | CCRYGG | 3 cut(s) | 483, 990, 1418 |
| BstF5I | GGATG | 6 cut(s) | 112, 354, 940, 1298, 1545, 1648 |
| BstH2I | RGCGCY | 1 cut(s) | 367 |
| BstHHI | GCGC | 1 cut(s) | 366 |
| BstKTI | GATC | 6 cut(s) | 221, 552, 931, 1012, 1690, 1700 |
| BstMAI | GTCTC | 5 cut(s) | 253, 779, 1376, 1734, 1800 |
| BstMBI | GATC | 6 cut(s) | 218, 549, 928, 1009, 1687, 1697 |
| BstMCI | CGRYCG | 1 cut(s) | 221 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 71, 1305, 1508, 1709 |
| BstNSI | RCATGY | 2 cut(s) | 1166, 1322 |
| BstV1I | GCAGC | 6 cut(s) | 331, 924, 1244, 1401, 1762, 1867 |
| BstV2I | GAAGAC | 3 cut(s) | 1379, 1574, 1732 |
| BstX2I | RGATCY | 1 cut(s) | 928 |
| BstYI | RGATCY | 1 cut(s) | 928 |
| Bsu36I | CCTNAGG | 1 cut(s) | 264 |
| BsuRI | GGCC | 3 cut(s) | 194, 313, 902 |
| BtgI | CCRYGG | 3 cut(s) | 483, 990, 1418 |
| BtgZI | GCGATG | 1 cut(s) | 1752 |
| BtsCI | GGATG | 6 cut(s) | 112, 354, 940, 1298, 1545, 1648 |
| BtsIMutI | CAGTG | 2 cut(s) | 317, 965 |
| Cac8I | GCNNGC | 6 cut(s) | 1144, 1164, 1197, 1320, 1509, 1773 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1018 |
| CciI | TCATGA | 2 cut(s) | 1074, 1284 |
| CfoI | GCGC | 1 cut(s) | 366 |
| CseI | GACGC | 1 cut(s) | 125 |
| Csp6I | GTAC | 3 cut(s) | 328, 1595, 1890 |
| CviQI | GTAC | 3 cut(s) | 328, 1595, 1890 |
| DdeI | CTNAG | 5 cut(s) | 264, 1609, 1736, 1797, 1848 |
| DpnI | GATC | 6 cut(s) | 220, 551, 930, 1011, 1689, 1699 |
| DpnII | GATC | 6 cut(s) | 218, 549, 928, 1009, 1687, 1697 |
| EaeI | YGGCCR | 1 cut(s) | 192 |
| Eam1104I | CTCTTC | 2 cut(s) | 396, 1584 |
| EarI | CTCTTC | 2 cut(s) | 396, 1584 |
| Eco130I | CCWWGG | 3 cut(s) | 483, 990, 1418 |
| Eco147I | AGGCCT | 2 cut(s) | 313, 902 |
| Eco31I | GGTCTC | 2 cut(s) | 253, 1376 |
| Eco47III | AGCGCT | 1 cut(s) | 365 |
| Eco57I | CTGAAG | 5 cut(s) | 600, 914, 1040, 1239, 1449 |
| Eco81I | CCTNAGG | 1 cut(s) | 264 |
| Eco88I | CYCGRG | 1 cut(s) | 599 |
| EcoT14I | CCWWGG | 3 cut(s) | 483, 990, 1418 |
| EcoT22I | ATGCAT | 2 cut(s) | 1084, 1168 |
| ErhI | CCWWGG | 3 cut(s) | 483, 990, 1418 |
| Esp3I | CGTCTC | 1 cut(s) | 1734 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 887, 919 |
| FaqI | GGGAC | 2 cut(s) | 262, 595 |
| FauNDI | CATATG | 1 cut(s) | 769 |
| FbaI | TGATCA | 2 cut(s) | 549, 1687 |
| Fnu4HI | GCNGC | 6 cut(s) | 345, 938, 1233, 1415, 1776, 1856 |
| FokI | GGATG | 6 cut(s) | 99, 341, 927, 1305, 1552, 1635 |
| Fsp4HI | GCNGC | 6 cut(s) | 345, 938, 1233, 1415, 1776, 1856 |
| FspBI | CTAG | 5 cut(s) | 228, 341, 656, 812, 1716 |
| GlaI | GCGC | 1 cut(s) | 365 |
| GluI | GCNGC | 6 cut(s) | 345, 938, 1233, 1415, 1776, 1856 |
| GsaI | CCCAGC | 1 cut(s) | 1547 |
| GsuI | CTGGAG | 1 cut(s) | 1424 |
| HaeII | RGCGCY | 1 cut(s) | 367 |
| HaeIII | GGCC | 3 cut(s) | 194, 313, 902 |
| HapII | CCGG | 2 cut(s) | 1095, 1837 |
| HgaI | GACGC | 1 cut(s) | 125 |
| HhaI | GCGC | 1 cut(s) | 366 |
| Hin6I | GCGC | 1 cut(s) | 364 |
| HinP1I | GCGC | 1 cut(s) | 364 |
| HinfI | GANTC | 9 cut(s) | 8, 371, 415, 461, 584, 808, 1098, 1654, 1789 |
| HpaII | CCGG | 2 cut(s) | 1095, 1837 |
| HphI | GGTGA | 2 cut(s) | 1147, 1757 |
| Hpy166II | GTNNAC | 3 cut(s) | 330, 890, 1349 |
| Hpy188I | TCNGA | 5 cut(s) | 460, 662, 724, 1653, 1800 |
| Hpy8I | GTNNAC | 3 cut(s) | 330, 890, 1349 |
| HpyAV | CCTTC | 8 cut(s) | 16, 293, 324, 499, 794, 878, 889, 1132 |
| HpyCH4III | ACNGT | 3 cut(s) | 1227, 1745, 1894 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 71, 1305, 1508, 1709 |
| HpyF3I | CTNAG | 5 cut(s) | 264, 1609, 1736, 1797, 1848 |
| HspAI | GCGC | 1 cut(s) | 364 |
| KpnI | GGTACC | 1 cut(s) | 1598 |
| Ksp22I | TGATCA | 2 cut(s) | 549, 1687 |
| Kzo9I | GATC | 6 cut(s) | 218, 549, 928, 1009, 1687, 1697 |
| LmnI | GCTCC | 2 cut(s) | 1086, 1315 |
| Lsp1109I | GCAGC | 6 cut(s) | 331, 924, 1244, 1401, 1762, 1867 |
| LweI | GCATC | 5 cut(s) | 727, 807, 949, 1489, 1530 |
| MaeI | CTAG | 5 cut(s) | 228, 341, 656, 812, 1716 |
| MaeIII | GTNAC | 4 cut(s) | 715, 742, 1659, 1678 |
| MalI | GATC | 6 cut(s) | 220, 551, 930, 1011, 1689, 1699 |
| MboI | GATC | 6 cut(s) | 218, 549, 928, 1009, 1687, 1697 |
| MflI | RGATCY | 1 cut(s) | 928 |
| MhlI | GDGCHC | 2 cut(s) | 1091, 1201 |
| MlsI | TGGCCA | 1 cut(s) | 194 |
| MluNI | TGGCCA | 1 cut(s) | 194 |
| MlyI | GAGTC | 1 cut(s) | 380 |
| Mox20I | TGGCCA | 1 cut(s) | 194 |
| Mph1103I | ATGCAT | 2 cut(s) | 1084, 1168 |
| MscI | TGGCCA | 1 cut(s) | 194 |
| MslI | CAYNNNNRTG | 3 cut(s) | 117, 1073, 1885 |
| Msp20I | TGGCCA | 1 cut(s) | 194 |
| MspCI | CTTAAG | 2 cut(s) | 493, 904 |
| MspI | CCGG | 2 cut(s) | 1095, 1837 |
| Mva1269I | GAATGC | 2 cut(s) | 1084, 1173 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 71, 1305, 1508, 1709 |
| NcoI | CCATGG | 3 cut(s) | 483, 990, 1418 |
| NdeI | CATATG | 1 cut(s) | 769 |
| NdeII | GATC | 6 cut(s) | 218, 549, 928, 1009, 1687, 1697 |
| NlaIV | GGNNCC | 1 cut(s) | 1596 |
| NsiI | ATGCAT | 2 cut(s) | 1084, 1168 |
| NspI | RCATGY | 2 cut(s) | 1166, 1322 |
| PaeI | GCATGC | 2 cut(s) | 1166, 1322 |
| PaeR7I | CTCGAG | 1 cut(s) | 599 |
| PagI | TCATGA | 2 cut(s) | 1074, 1284 |
| PceI | AGGCCT | 2 cut(s) | 313, 902 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 214 |
| PctI | GAATGC | 2 cut(s) | 1084, 1173 |
| PfeI | GAWTC | 8 cut(s) | 8, 415, 461, 584, 808, 1098, 1654, 1789 |
| PkrI | GCNGC | 6 cut(s) | 346, 939, 1234, 1416, 1777, 1857 |
| Ple19I | CGATCG | 1 cut(s) | 221 |
| PleI | GAGTC | 1 cut(s) | 379 |
| PpsI | GAGTC | 1 cut(s) | 379 |
| PsiI | TTATAA | 2 cut(s) | 446, 540 |
| PspFI | CCCAGC | 1 cut(s) | 1543 |
| PspN4I | GGNNCC | 1 cut(s) | 1596 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1018 |
| PsuI | RGATCY | 1 cut(s) | 928 |
| PvuI | CGATCG | 1 cut(s) | 221 |
| RsaI | GTAC | 3 cut(s) | 329, 1596, 1891 |
| RsaNI | GTAC | 3 cut(s) | 328, 1595, 1890 |
| RseI | CAYNNNNRTG | 3 cut(s) | 117, 1073, 1885 |
| SatI | GCNGC | 6 cut(s) | 345, 938, 1233, 1415, 1776, 1856 |
| Sau3AI | GATC | 6 cut(s) | 218, 549, 928, 1009, 1687, 1697 |
| SchI | GAGTC | 1 cut(s) | 380 |
| SduI | GDGCHC | 2 cut(s) | 1091, 1201 |
| SfaNI | GCATC | 5 cut(s) | 727, 807, 949, 1489, 1530 |
| Sfr274I | CTCGAG | 1 cut(s) | 599 |
| SlaI | CTCGAG | 1 cut(s) | 599 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 117, 1073, 1885 |
| SmlI | CTYRAG | 4 cut(s) | 493, 599, 904, 1200 |
| SmoI | CTYRAG | 4 cut(s) | 493, 599, 904, 1200 |
| SphI | GCATGC | 2 cut(s) | 1166, 1322 |
| SseBI | AGGCCT | 2 cut(s) | 313, 902 |
| SspI | AATATT | 1 cut(s) | 429 |
| SspMI | CTAG | 5 cut(s) | 228, 341, 656, 812, 1716 |
| StuI | AGGCCT | 2 cut(s) | 313, 902 |
| StyI | CCWWGG | 3 cut(s) | 483, 990, 1418 |
| TaaI | ACNGT | 3 cut(s) | 1227, 1745, 1894 |
| TaqI | TCGA | 4 cut(s) | 208, 221, 600, 1008 |
| TatI | WGTACW | 1 cut(s) | 1889 |
| TfiI | GAWTC | 8 cut(s) | 8, 415, 461, 584, 808, 1098, 1654, 1789 |
| TscAI | CASTG | 2 cut(s) | 324, 972 |
| TseI | GCWGC | 6 cut(s) | 344, 937, 1232, 1414, 1775, 1855 |
| TspRI | CASTG | 2 cut(s) | 324, 972 |
| Vha464I | CTTAAG | 2 cut(s) | 493, 904 |
| XapI | RAATTY | 4 cut(s) | 1034, 1356, 1617, 1808 |
| XbaI | TCTAGA | 1 cut(s) | 811 |
| XceI | RCATGY | 2 cut(s) | 1166, 1322 |
| XhoI | CTCGAG | 1 cut(s) | 599 |
| XspI | CTAG | 5 cut(s) | 228, 341, 656, 812, 1716 |
| Zsp2I | ATGCAT | 2 cut(s) | 1084, 1168 |