Prupe.1G452700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
38073410 .. 38076454
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G452700.2

Sequence Viewer

Length: 1911 bp
ATGGGAGAATCAGGCAAAGAGAAGGCTTTTTTAAGAACAACCAACAAAAACGAAGAAGCAACTGCCACTACTGCAAATGGACGGGTTCAAGCATTACCCATCAAGGGAAATCATCCAGATGATAAGAACCATTTGCGTCTAATTTCAAAACCTAATGGCTCAATGAGGCAATCCCATTGTTCTATCTGCATGGCCAAAGAGAATTGTCGAATTGTGCGATCGAGAACTAGGCTAATGAACATTTTGATAGAGAGAGGGAGACCTCAGGAAGCCCAGTCCCTTTTTAATGGTTTAATTGAAGGAGGACACAGGCCTTCACTGGTATCGTACACAACCCTCCTAGCTGCCTTGACCATCCAGAAGCGCTTTGAGTCCATTCCTTATGTTATATCACAGGTGGAAGAGAATGGAATGAATCCTGATTTAATATTTTTCAATGCTGTTATAAATGCTTTTTCGGAATCTGGGAATGTAGAGAAAGCCATGGAAACCTTAAGGAAGATGAAGGAGAGTGGATTAAAACCCACTACCAGCACTTATAACACATTGATCAAAGGGTATGGGATTTCTGGTAAGCCTGAAGATTCTTTGCAACTGCTCGAGATGATGTCCCAAGAGGAAAATGTGAAACCAAATATAAGGACTTTTAATGTTCTAGTCAGAGCATGGTGTAAGAAGAACATTACAGAGGCATGGAATGTGGTGCATAAGATGGTAACTTCTGATATGCGACCTGATGCCGTTACCTACAACACATTAGCAACAGCATATGCTCAAAATGGAGAGACAAGTAAGGCAGAAGGAATGATTCTAGAGATGCAGAACAACAAAGTGCAACCCAATGAACGAACTTGTGGCATTATCATAAGTGGGTATTGTAAGGAAGGTAAACTGAAGGAGGCCTTAAGGTTTATGAAAAGGATAAAAGATCTTGGGCTGCATCCAAACATCGTTGTCTTTAACTCACTGGTTAAAGGTTTTGTTGATACCATGGATAGAGATGGGGTCGATCAGGTGCTGAAGTTGATGGAAGAATTTGGGGTAAAACCAGATGTGATAACATTTAGCACCATCATGAATGCATGGAGCACAGCCGGATTCATGGAGAAGTGTAGGCAAATCTTTGATGATATGGTGAAGGCTGGCATAAAACCTGACACGCATGCATACAGCATTCTTGCCAAAGGTTATGTGCGTGCTCAAGAAGTGGAGAAAGCTGAAGAACTGTTAGCAGCCATGATGAAATCGGGAGTTCGTCCAAATGTTGTGATTTTCACAACCATCATGAGTGGATGGTGCAGTTCTGGCAGAATGGAGCATGCAATTAGAGTTTTTGATAAGATGTGTGAACATGGAATTTCTCCCAATTTGAAGACATTTGAGACCCTAATATGGGGATTTGGAGAAACAAAGCTGCCATGGAAAGCTGAAGAAATACTCCAGATTATGAAAGAGTTTGGTGTTCAGCCAGAAAAATCTACTATCTCGCTTGTTGCTGATGCTTGGCGTGCGATTGGATTAACAAAGGAGGCAAATAGGATGCTGGGTGCTATGAGAAGTAAAGAGAAGACCAATCAGGTTGAAACCGAAGAGGTACCATTTGAGAGCTTAGAGAAAATTTATCATAAGAAATCTGCAAGTGCCTTTCATCCGAATCTGTTACAGATACCATCAGTAGTTACAAGTGATCAAAAAGGATCAGCAGTTTCAGCAACTAGAAAAGGAAGACTGGTGCTAAGAGACGGTGATTTTTCATTAGACATCTCATCGCTTGCTGCAAAATCTATGAATCTGTCTCAGACTTGTAAATTTGGGGAAAGATTGCCAATTATATGCCGGAAGCAATCTCAGGGGCAGCTTGGTGTGTATGGTCAGTTTGCACAGCAATGTACAGTTGTGTTCTTGAACTGA

Protein Analysis

637

Amino Acids

71.13

Weight (kDa)

9.07

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 446, 540
Acc65I GGTACC 1 cut(s) 1594
AccB1I GGYRCC 1 cut(s) 1594
AclWI GGATC 1 cut(s) 1705
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 4 cut(s) 1034, 1356, 1617, 1808
AcuI CTGAAG 5 cut(s) 600, 914, 1040, 1239, 1449
AfaI GTAC 3 cut(s) 329, 1596, 1891
AfeI AGCGCT 1 cut(s) 365
AfiI CCNNNNNNNGG 3 cut(s) 104, 1392, 1393
AflII CTTAAG 2 cut(s) 493, 904
AgsI TTSAA 7 cut(s) 89, 147, 299, 436, 1372, 1583, 1906
AluBI AGCT 6 cut(s) 344, 1217, 1414, 1427, 1608, 1858
AluI AGCT 6 cut(s) 344, 1217, 1414, 1427, 1608, 1858
Alw21I GWGCWC 2 cut(s) 1091, 1201
Alw26I GTCTC 5 cut(s) 253, 779, 1376, 1734, 1800
AlwI GGATC 1 cut(s) 1705
AlwNI CAGNNNCTG 1 cut(s) 1018
Ama87I CYCGRG 1 cut(s) 599
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 3 cut(s) 192, 311, 900
ApeKI GCWGC 6 cut(s) 344, 937, 1232, 1414, 1775, 1855
ApoI RAATTY 4 cut(s) 1034, 1356, 1617, 1808
Asp718I GGTACC 1 cut(s) 1594
AspLEI GCGC 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 1147, 1757
AvaI CYCGRG 1 cut(s) 599
AxyI CCTNAGG 1 cut(s) 264
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 1 cut(s) 1594
BbsI GAAGAC 3 cut(s) 1379, 1574, 1732
Bbv12I GWGCWC 2 cut(s) 1091, 1201
BbvI GCAGC 6 cut(s) 331, 924, 1244, 1401, 1762, 1867
BccI CCATC 9 cut(s) 107, 362, 706, 995, 1021, 1079, 1287, 1289, 1678
BceAI ACGGC 1 cut(s) 725
BclI TGATCA 2 cut(s) 549, 1687
BcoDI GTCTC 5 cut(s) 253, 779, 1376, 1734, 1800
BfaI CTAG 5 cut(s) 228, 341, 656, 812, 1716
BfoI RGCGCY 1 cut(s) 367
BfrI CTTAAG 2 cut(s) 493, 904
BglII AGATCT 1 cut(s) 928
BisI GCNGC 6 cut(s) 345, 938, 1233, 1415, 1776, 1856
BlsI GCNGC 6 cut(s) 346, 939, 1234, 1416, 1777, 1857
BmeT110I CYCGRG 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 1596
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 5 cut(s) 727, 807, 949, 1489, 1530
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 3 cut(s) 1379, 1574, 1732
BpmI CTGGAG 1 cut(s) 1424
BpuEI CTTGAG 1 cut(s) 1185
BsaI GGTCTC 2 cut(s) 253, 1376
BsaJI CCNNGG 3 cut(s) 483, 990, 1418
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 1392, 1393
Bse1I ACTGG 4 cut(s) 274, 324, 972, 1734
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 1892
BseDI CCNNGG 3 cut(s) 483, 990, 1418
BseGI GGATG 6 cut(s) 112, 354, 940, 1298, 1545, 1648
BseLI CCNNNNNNNGG 3 cut(s) 104, 1392, 1393
BseMI GCAATG 1 cut(s) 1892
BseMII CTCAG 3 cut(s) 278, 1811, 1862
BseNI ACTGG 4 cut(s) 274, 324, 972, 1734
BseXI GCAGC 6 cut(s) 331, 924, 1244, 1401, 1762, 1867
BseYI CCCAGC 1 cut(s) 1543
BsgI GTGCAG 1 cut(s) 1318
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 3 cut(s) 194, 313, 902
BshNI GGYRCC 1 cut(s) 1594
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 2 cut(s) 1091, 1201
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 2 cut(s) 1095, 1837
BslFI GGGAC 2 cut(s) 262, 595
BslI CCNNNNNNNGG 3 cut(s) 104, 1392, 1393
BsmAI GTCTC 5 cut(s) 253, 779, 1376, 1734, 1800
BsmBI CGTCTC 1 cut(s) 1734
BsmFI GGGAC 2 cut(s) 262, 595
BsmI GAATGC 2 cut(s) 1084, 1173
BsnI GGCC 3 cut(s) 194, 313, 902
Bso31I GGTCTC 2 cut(s) 253, 1376
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 1091, 1201
Bsp1407I TGTACA 1 cut(s) 1889
Bsp143I GATC 6 cut(s) 218, 549, 928, 1009, 1687, 1697
Bsp19I CCATGG 3 cut(s) 483, 990, 1418
BspANI GGCC 3 cut(s) 194, 313, 902
BspCNI CTCAG 3 cut(s) 277, 1810, 1861
BspHI TCATGA 2 cut(s) 1074, 1284
BspLI GGNNCC 1 cut(s) 1596
BspPI GGATC 1 cut(s) 1705
BspT107I GGYRCC 1 cut(s) 1594
BspTI CTTAAG 2 cut(s) 493, 904
BspTNI GGTCTC 2 cut(s) 253, 1376
BsrDI GCAATG 1 cut(s) 1892
BsrGI TGTACA 1 cut(s) 1889
BsrI ACTGG 4 cut(s) 274, 324, 972, 1734
BssECI CCNNGG 3 cut(s) 483, 990, 1418
BssMI GATC 6 cut(s) 218, 549, 928, 1009, 1687, 1697
BssT1I CCWWGG 3 cut(s) 483, 990, 1418
Bst4CI ACNGT 3 cut(s) 1227, 1745, 1894
Bst6I CTCTTC 2 cut(s) 396, 1584
BstAFI CTTAAG 2 cut(s) 493, 904
BstAUI TGTACA 1 cut(s) 1889
BstC8I GCNNGC 6 cut(s) 1144, 1164, 1197, 1320, 1509, 1773
BstDEI CTNAG 5 cut(s) 264, 1609, 1736, 1797, 1848
BstDSI CCRYGG 3 cut(s) 483, 990, 1418
BstF5I GGATG 6 cut(s) 112, 354, 940, 1298, 1545, 1648
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 6 cut(s) 221, 552, 931, 1012, 1690, 1700
BstMAI GTCTC 5 cut(s) 253, 779, 1376, 1734, 1800
BstMBI GATC 6 cut(s) 218, 549, 928, 1009, 1687, 1697
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 4 cut(s) 71, 1305, 1508, 1709
BstNSI RCATGY 2 cut(s) 1166, 1322
BstV1I GCAGC 6 cut(s) 331, 924, 1244, 1401, 1762, 1867
BstV2I GAAGAC 3 cut(s) 1379, 1574, 1732
BstX2I RGATCY 1 cut(s) 928
BstYI RGATCY 1 cut(s) 928
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 3 cut(s) 194, 313, 902
BtgI CCRYGG 3 cut(s) 483, 990, 1418
BtgZI GCGATG 1 cut(s) 1752
BtsCI GGATG 6 cut(s) 112, 354, 940, 1298, 1545, 1648
BtsIMutI CAGTG 2 cut(s) 317, 965
Cac8I GCNNGC 6 cut(s) 1144, 1164, 1197, 1320, 1509, 1773
CaiI CAGNNNCTG 1 cut(s) 1018
CciI TCATGA 2 cut(s) 1074, 1284
CfoI GCGC 1 cut(s) 366
CseI GACGC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 328, 1595, 1890
CviQI GTAC 3 cut(s) 328, 1595, 1890
DdeI CTNAG 5 cut(s) 264, 1609, 1736, 1797, 1848
DpnI GATC 6 cut(s) 220, 551, 930, 1011, 1689, 1699
DpnII GATC 6 cut(s) 218, 549, 928, 1009, 1687, 1697
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 396, 1584
EarI CTCTTC 2 cut(s) 396, 1584
Eco130I CCWWGG 3 cut(s) 483, 990, 1418
Eco147I AGGCCT 2 cut(s) 313, 902
Eco31I GGTCTC 2 cut(s) 253, 1376
Eco47III AGCGCT 1 cut(s) 365
Eco57I CTGAAG 5 cut(s) 600, 914, 1040, 1239, 1449
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 599
EcoT14I CCWWGG 3 cut(s) 483, 990, 1418
EcoT22I ATGCAT 2 cut(s) 1084, 1168
ErhI CCWWGG 3 cut(s) 483, 990, 1418
Esp3I CGTCTC 1 cut(s) 1734
FalI AAGNNNNNCTT 2 cut(s) 887, 919
FaqI GGGAC 2 cut(s) 262, 595
FauNDI CATATG 1 cut(s) 769
FbaI TGATCA 2 cut(s) 549, 1687
Fnu4HI GCNGC 6 cut(s) 345, 938, 1233, 1415, 1776, 1856
FokI GGATG 6 cut(s) 99, 341, 927, 1305, 1552, 1635
Fsp4HI GCNGC 6 cut(s) 345, 938, 1233, 1415, 1776, 1856
FspBI CTAG 5 cut(s) 228, 341, 656, 812, 1716
GlaI GCGC 1 cut(s) 365
GluI GCNGC 6 cut(s) 345, 938, 1233, 1415, 1776, 1856
GsaI CCCAGC 1 cut(s) 1547
GsuI CTGGAG 1 cut(s) 1424
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 3 cut(s) 194, 313, 902
HapII CCGG 2 cut(s) 1095, 1837
HgaI GACGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 366
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 9 cut(s) 8, 371, 415, 461, 584, 808, 1098, 1654, 1789
HpaII CCGG 2 cut(s) 1095, 1837
HphI GGTGA 2 cut(s) 1147, 1757
Hpy166II GTNNAC 3 cut(s) 330, 890, 1349
Hpy188I TCNGA 5 cut(s) 460, 662, 724, 1653, 1800
Hpy8I GTNNAC 3 cut(s) 330, 890, 1349
HpyAV CCTTC 8 cut(s) 16, 293, 324, 499, 794, 878, 889, 1132
HpyCH4III ACNGT 3 cut(s) 1227, 1745, 1894
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 1305, 1508, 1709
HpyF3I CTNAG 5 cut(s) 264, 1609, 1736, 1797, 1848
HspAI GCGC 1 cut(s) 364
KpnI GGTACC 1 cut(s) 1598
Ksp22I TGATCA 2 cut(s) 549, 1687
Kzo9I GATC 6 cut(s) 218, 549, 928, 1009, 1687, 1697
LmnI GCTCC 2 cut(s) 1086, 1315
Lsp1109I GCAGC 6 cut(s) 331, 924, 1244, 1401, 1762, 1867
LweI GCATC 5 cut(s) 727, 807, 949, 1489, 1530
MaeI CTAG 5 cut(s) 228, 341, 656, 812, 1716
MaeIII GTNAC 4 cut(s) 715, 742, 1659, 1678
MalI GATC 6 cut(s) 220, 551, 930, 1011, 1689, 1699
MboI GATC 6 cut(s) 218, 549, 928, 1009, 1687, 1697
MflI RGATCY 1 cut(s) 928
MhlI GDGCHC 2 cut(s) 1091, 1201
MlsI TGGCCA 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 380
Mox20I TGGCCA 1 cut(s) 194
Mph1103I ATGCAT 2 cut(s) 1084, 1168
MscI TGGCCA 1 cut(s) 194
MslI CAYNNNNRTG 3 cut(s) 117, 1073, 1885
Msp20I TGGCCA 1 cut(s) 194
MspCI CTTAAG 2 cut(s) 493, 904
MspI CCGG 2 cut(s) 1095, 1837
Mva1269I GAATGC 2 cut(s) 1084, 1173
MwoI GCNNNNNNNGC 4 cut(s) 71, 1305, 1508, 1709
NcoI CCATGG 3 cut(s) 483, 990, 1418
NdeI CATATG 1 cut(s) 769
NdeII GATC 6 cut(s) 218, 549, 928, 1009, 1687, 1697
NlaIV GGNNCC 1 cut(s) 1596
NsiI ATGCAT 2 cut(s) 1084, 1168
NspI RCATGY 2 cut(s) 1166, 1322
PaeI GCATGC 2 cut(s) 1166, 1322
PaeR7I CTCGAG 1 cut(s) 599
PagI TCATGA 2 cut(s) 1074, 1284
PceI AGGCCT 2 cut(s) 313, 902
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PctI GAATGC 2 cut(s) 1084, 1173
PfeI GAWTC 8 cut(s) 8, 415, 461, 584, 808, 1098, 1654, 1789
PkrI GCNGC 6 cut(s) 346, 939, 1234, 1416, 1777, 1857
Ple19I CGATCG 1 cut(s) 221
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PsiI TTATAA 2 cut(s) 446, 540
PspFI CCCAGC 1 cut(s) 1543
PspN4I GGNNCC 1 cut(s) 1596
PstNI CAGNNNCTG 1 cut(s) 1018
PsuI RGATCY 1 cut(s) 928
PvuI CGATCG 1 cut(s) 221
RsaI GTAC 3 cut(s) 329, 1596, 1891
RsaNI GTAC 3 cut(s) 328, 1595, 1890
RseI CAYNNNNRTG 3 cut(s) 117, 1073, 1885
SatI GCNGC 6 cut(s) 345, 938, 1233, 1415, 1776, 1856
Sau3AI GATC 6 cut(s) 218, 549, 928, 1009, 1687, 1697
SchI GAGTC 1 cut(s) 380
SduI GDGCHC 2 cut(s) 1091, 1201
SfaNI GCATC 5 cut(s) 727, 807, 949, 1489, 1530
Sfr274I CTCGAG 1 cut(s) 599
SlaI CTCGAG 1 cut(s) 599
SmiMI CAYNNNNRTG 3 cut(s) 117, 1073, 1885
SmlI CTYRAG 4 cut(s) 493, 599, 904, 1200
SmoI CTYRAG 4 cut(s) 493, 599, 904, 1200
SphI GCATGC 2 cut(s) 1166, 1322
SseBI AGGCCT 2 cut(s) 313, 902
SspI AATATT 1 cut(s) 429
SspMI CTAG 5 cut(s) 228, 341, 656, 812, 1716
StuI AGGCCT 2 cut(s) 313, 902
StyI CCWWGG 3 cut(s) 483, 990, 1418
TaaI ACNGT 3 cut(s) 1227, 1745, 1894
TaqI TCGA 4 cut(s) 208, 221, 600, 1008
TatI WGTACW 1 cut(s) 1889
TfiI GAWTC 8 cut(s) 8, 415, 461, 584, 808, 1098, 1654, 1789
TscAI CASTG 2 cut(s) 324, 972
TseI GCWGC 6 cut(s) 344, 937, 1232, 1414, 1775, 1855
TspRI CASTG 2 cut(s) 324, 972
Vha464I CTTAAG 2 cut(s) 493, 904
XapI RAATTY 4 cut(s) 1034, 1356, 1617, 1808
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 2 cut(s) 1166, 1322
XhoI CTCGAG 1 cut(s) 599
XspI CTAG 5 cut(s) 228, 341, 656, 812, 1716
Zsp2I ATGCAT 2 cut(s) 1084, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.