Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004946

Physical Location & Seq

Genomic Coordinates Reverse (-)

78757004 .. 78757478

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAAATGGTGCAGAGGCAAGCTGCGTGGACAAGAGTTGTGGGGTTGGCTGTGGCCGCGGGGATCAGTACCCCGGTTGATCGTTCTGGCTCATTTCATACAGACCCAATATTCTACATATACCACCAGTACTTACAAATGATCAAAAAATGGCCAGCTTCAGCATCTAGGAAAGGCACAATGATGATGAGAGATGGTGATTTTTCATTAGATGTCTCGTCACTTGCTGCAAAATTTATAAATTTGTCTCATACTTATAAGTCTGAAGAAAGATTGCCGGTCAATATATGCCAGAAGCATTCTCGTGGGCAGCTTGATGTGTATGGTCAGTTTGCACAGTCATGCAATTTTGTGTTCTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

122

Amino Acids

13.73

Weight (kDa)

9.26

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25630 AT5G25630 AT5G25630
fragaria_vesca	FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130
malus_domestica	MD02G1045100.v1.1 MD08G1118600.v1.1 MD15G1097800.v1.1 MD15G1097900.v1.1
prunus_persica	Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1
pyrus_communis	pycom08g09890
rosa_chinensis	RchiOBHm_Chr6g0305741 RchiOBHm_Chr6g0306351
rosa_laevigata	RLG00000010863 RLG00000021840
rosa_roxburghii	Rroxscaffold_7G00162390
rosa_rugosa	Rorug06G0343700 Rorug06G0343800
rosa_samantha	Rh6AG455200 Rh6BG446100 Rh6CG469100 Rh6DG455700
rosa_wichuraiana	Rw6G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	239, 258
AccII	CGCG	1 cut(s)	59
AciI	CCGC	2 cut(s)	57, 59
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	2 cut(s)	54, 152
AcsI	RAATTY	2 cut(s)	233, 241
AcuI	CTGAAG	2 cut(s)	144, 285
AfaI	GTAC	2 cut(s)	70, 131
AgsI	TTSAA	1 cut(s)	361
AluBI	AGCT	3 cut(s)	23, 158, 313
AluI	AGCT	3 cut(s)	23, 158, 313
Alw26I	GTCTC	2 cut(s)	220, 252
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	2 cut(s)	54, 152
ApeKI	GCWGC	3 cut(s)	23, 227, 310
ApoI	RAATTY	2 cut(s)	233, 241
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	154
BauI	CACGAG	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	10, 214, 322
BccI	CCATC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	220, 252
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	4 cut(s)	24, 57, 228, 311
BlsI	GCNGC	4 cut(s)	25, 58, 229, 312
BmcAI	AGTACT	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	57, 72
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	57, 72
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	10, 214, 322
BsgI	GTGCAG	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	56, 154
BsiSI	CCGG	2 cut(s)	74, 278
BsmAI	GTCTC	2 cut(s)	220, 252
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	56, 154
Bsp143I	GATC	3 cut(s)	63, 79, 141
BspACI	CCGC	2 cut(s)	57, 59
BspANI	GGCC	2 cut(s)	56, 154
BspFNI	CGCG	1 cut(s)	59
BspPI	GGATC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	57, 72
BssMI	GATC	3 cut(s)	63, 79, 141
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	21, 156
BstDSI	CCRYGG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	3 cut(s)	66, 82, 144
BstMAI	GTCTC	2 cut(s)	220, 252
BstMBI	GATC	3 cut(s)	63, 79, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	10, 214, 322
BsuRI	GGCC	2 cut(s)	56, 154
BtgI	CCRYGG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	21, 156
Cfr10I	RCCGGY	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	69, 130
CspCI	CAANNNNNGTGG	4 cut(s)	8, 21, 43, 56
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	7 cut(s)	23, 50, 56, 90, 154, 158, 313
CviKI_1	RGCY	7 cut(s)	23, 50, 56, 90, 154, 158, 313
CviQI	GTAC	2 cut(s)	69, 130
DpnI	GATC	3 cut(s)	65, 81, 143
DpnII	GATC	3 cut(s)	63, 79, 141
EaeI	YGGCCR	2 cut(s)	54, 152
Eco57I	CTGAAG	2 cut(s)	144, 285
FaeI	CATG	1 cut(s)	345
FatI	CATG	1 cut(s)	341
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	24, 57, 228, 311
Fsp4HI	GCNGC	4 cut(s)	24, 57, 228, 311
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	4 cut(s)	24, 57, 228, 311
HaeIII	GGCC	2 cut(s)	56, 154
HapII	CCGG	2 cut(s)	74, 278
Hin1II	CATG	1 cut(s)	345
HpaII	CCGG	2 cut(s)	74, 278
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	4 cut(s)	13, 230, 335, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	141
KspI	CCGCGG	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	63, 79, 141
LpnPI	CCDG	6 cut(s)	72, 87, 140, 168, 291, 305
Lsp1109I	GCAGC	3 cut(s)	10, 214, 322
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	65, 81, 143
MboI	GATC	3 cut(s)	63, 79, 141
MboII	GAAGA	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	154
MluCI	AATT	3 cut(s)	233, 241, 346
MluNI	TGGCCA	1 cut(s)	154
MnlI	CCTC	1 cut(s)	9
Mox20I	TGGCCA	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	154
MslI	CAYNNNNRTG	3 cut(s)	182, 303, 340
Msp20I	TGGCCA	1 cut(s)	154
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	2 cut(s)	74, 278
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	298
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	63, 79, 141
NlaIII	CATG	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	219
PctI	GAATGC	1 cut(s)	298
PkrI	GCNGC	4 cut(s)	25, 58, 229, 312
PsiI	TTATAA	2 cut(s)	239, 258
RsaI	GTAC	2 cut(s)	70, 131
RsaNI	GTAC	2 cut(s)	69, 130
RseI	CAYNNNNRTG	3 cut(s)	182, 303, 340
SacII	CCGCGG	1 cut(s)	60
SatI	GCNGC	4 cut(s)	24, 57, 228, 311
Sau3AI	GATC	3 cut(s)	63, 79, 141
ScaI	AGTACT	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	3 cut(s)	25, 160, 315
SfaNI	GCATC	1 cut(s)	173
Sfr303I	CCGCGG	1 cut(s)	60
SgrBI	CCGCGG	1 cut(s)	60
SmiMI	CAYNNNNRTG	3 cut(s)	182, 303, 340
Sse9I	AATT	3 cut(s)	233, 241, 346
SsiI	CCGC	2 cut(s)	57, 59
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	339
TasI	AATT	3 cut(s)	233, 241, 346
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	3 cut(s)	23, 227, 310
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	86, 195
XapI	RAATTY	2 cut(s)	233, 241
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.