Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004946

Physical Location & Seq

Genomic Coordinates Reverse (-)

6809180 .. 6810153

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1097900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGCGGGTATTGCAAGGATGGTAAGTTGAAGGAGGCCTTAAGGTTTATGCGCAGGATAAAAGATCTTGGCCTCTGCCCGAACATTGTACTCTTTAACTCGCTGGTTAAAGGATTCGTAGACACCATGGATAGAGATGGGGTTGATCAGTTTGCAATTTTGCAGGTGCTGAAATTGATGGAAGAATTTGGGGTCGAACCAGATGTGATAACATTTAGCACCATCATGAATGCATGGAGCACAGCAGGGTTCATGGAGAAGTGTAGACAAATCTTCGATGACATGGTGAAGGCCGGCATACAACCCGATGCACATGCATACAGCATTCTTACCAAAGGTTACGTGCGTGCTCAAGAAGTCGAGAAAGCTGAAGAACTATTTGCAACCATGATCAAATTAGGAGTTCGTCCAATCGTTGTGATATTCACAACCATCATGAGCGGATGGTGCAGTTCTGGCAGTGGCAGAATGGAGAACGCGATCAAAGTTTTTGATAAGATGTACGAGTCCGGTATTTCTCCCAATTTAAAGACATCTGAGACCCTAATACGGGGATTTAGAGGAGCAAACCTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

193

Amino Acids

21.49

Weight (kDa)

7.61

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 40	1.3e-06	PPR repeat family
PPR_long	PF17177	10 - 111	2.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	67 - 115	1.8e-12	PPR repeat family
PPR_long	PF17177	89 - 178	2.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	91 - 147	2.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	139 - 186	9.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25630 AT5G25630 AT5G25630
fragaria_vesca	FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130
malus_domestica	MD02G1045100.v1.1 MD08G1118600.v1.1 MD15G1097800.v1.1 MD15G1097900.v1.1
prunus_persica	Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1
pyrus_communis	pycom08g09890
rosa_chinensis	RchiOBHm_Chr6g0305741 RchiOBHm_Chr6g0306351
rosa_laevigata	RLG00000010863 RLG00000021840
rosa_roxburghii	Rroxscaffold_7G00162390
rosa_rugosa	Rorug06G0343700 Rorug06G0343800
rosa_samantha	Rh6AG455200 Rh6BG446100 Rh6CG469100 Rh6DG455700
rosa_wichuraiana	Rw6G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc16I	TGCGCA	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	154
AccBSI	CCGCTC	2 cut(s)	6, 441
AccI	GTMKAC	2 cut(s)	120, 265
AccII	CGCG	1 cut(s)	479
AciI	CCGC	2 cut(s)	6, 441
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	90, 503
AfiI	CCNNNNNNNGG	2 cut(s)	549, 550
AflII	CTTAAG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw21I	GWGCWC	2 cut(s)	242, 352
Alw26I	GTCTC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	3 cut(s)	36, 70, 291
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	298
Bbv12I	GWGCWC	2 cut(s)	242, 352
BccI	CCATC	6 cut(s)	14, 131, 172, 230, 438, 440
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BclI	TGATCA	2 cut(s)	145, 390
BcoDI	GTCTC	1 cut(s)	533
BfrI	CTTAAG	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	64
BmsI	GCATC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 550
Bse118I	RCCGGY	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	25, 449
BseLI	CCNNNNNNNGG	2 cut(s)	549, 550
BseMII	CTCAG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	576
BsgI	GTGCAG	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	3 cut(s)	38, 72, 293
BsiHKAI	GWGCWC	2 cut(s)	242, 352
BsiSI	CCGG	2 cut(s)	294, 510
BslI	CCNNNNNNNGG	2 cut(s)	549, 550
BsmAI	GTCTC	1 cut(s)	533
BsmI	GAATGC	2 cut(s)	235, 324
BsnI	GGCC	3 cut(s)	38, 72, 293
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	242, 352
Bsp143I	GATC	4 cut(s)	64, 145, 390, 480
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	2 cut(s)	6, 441
BspANI	GGCC	3 cut(s)	38, 72, 293
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	2 cut(s)	225, 435
BspMI	ACCTGC	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	2 cut(s)	6, 441
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	4 cut(s)	64, 145, 390, 480
BssT1I	CCWWGG	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	295, 348
BstDEI	CTNAG	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	25, 449
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	4 cut(s)	67, 148, 393, 483
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	4 cut(s)	64, 145, 390, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 447, 456
BstNSI	RCATGY	1 cut(s)	317
BstUI	CGCG	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	38, 72, 293
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	25, 449
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	466
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	295, 348
CaiI	CAGNNNCTG	1 cut(s)	169
CciI	TCATGA	2 cut(s)	225, 435
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	89, 502
CviAII	CATG	9 cut(s)	127, 226, 234, 253, 283, 314, 388, 436, 576
CviJI	RGCY	4 cut(s)	38, 72, 293, 368
CviKI_1	RGCY	4 cut(s)	38, 72, 293, 368
CviQI	GTAC	2 cut(s)	89, 502
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	4 cut(s)	66, 147, 392, 482
DpnII	GATC	4 cut(s)	64, 145, 390, 480
DraI	TTTAAA	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	2 cut(s)	235, 319
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	9 cut(s)	130, 229, 237, 256, 286, 317, 391, 439, 579
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	9 cut(s)	126, 225, 233, 252, 282, 313, 387, 435, 575
FbaI	TGATCA	2 cut(s)	145, 390
FblI	GTMKAC	2 cut(s)	120, 265
FokI	GGATG	2 cut(s)	32, 456
FspI	TGCGCA	1 cut(s)	53
GlaI	GCGC	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	38, 72, 293
HapII	CCGG	2 cut(s)	294, 510
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	9 cut(s)	130, 229, 237, 256, 286, 317, 391, 439, 579
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	114, 506
HpaII	CCGG	2 cut(s)	294, 510
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	121, 266
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	4 cut(s)	226, 353, 361, 436
Hpy8I	GTNNAC	2 cut(s)	121, 266
HpyAV	CCTTC	2 cut(s)	25, 283
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	8 cut(s)	15, 155, 163, 233, 311, 317, 383, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 447, 456
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	9 cut(s)	130, 229, 237, 256, 286, 317, 391, 439, 579
HspAI	GCGC	1 cut(s)	52
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Ksp22I	TGATCA	2 cut(s)	145, 390
Kzo9I	GATC	4 cut(s)	64, 145, 390, 480
LmnI	GCTCC	2 cut(s)	237, 563
LpnPI	CCDG	8 cut(s)	40, 89, 149, 213, 231, 307, 441, 523
LweI	GCATC	1 cut(s)	298
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	66, 147, 392, 482
MbiI	CCGCTC	2 cut(s)	6, 441
MboI	GATC	4 cut(s)	64, 145, 390, 480
MboII	GAAGA	3 cut(s)	194, 265, 383
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	242, 352
MluCI	AATT	5 cut(s)	156, 173, 185, 395, 523
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	3 cut(s)	28, 83, 554
Mph1103I	ATGCAT	2 cut(s)	235, 319
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	4 cut(s)	41, 96, 108, 527
MslI	CAYNNNNRTG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	40
MspI	CCGG	2 cut(s)	294, 510
Mva1269I	GAATGC	2 cut(s)	235, 324
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	12, 447, 456
NaeI	GCCGGC	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	4 cut(s)	64, 145, 390, 480
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	9 cut(s)	130, 229, 237, 256, 286, 317, 391, 439, 579
NsbI	TGCGCA	1 cut(s)	53
NsiI	ATGCAT	2 cut(s)	235, 319
NspI	RCATGY	1 cut(s)	317
PagI	TCATGA	2 cut(s)	225, 435
PaqCI	CACCTGC	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	38
PctI	GAATGC	2 cut(s)	235, 324
PdiI	GCCGGC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	90, 503
RsaNI	GTAC	2 cut(s)	89, 502
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	41, 96, 108, 527
Sau3AI	GATC	4 cut(s)	64, 145, 390, 480
SchI	GAGTC	1 cut(s)	515
SduI	GDGCHC	2 cut(s)	242, 352
SetI	ASST	6 cut(s)	47, 168, 340, 345, 370, 573
SfaNI	GCATC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	40, 351
SmoI	CTYRAG	2 cut(s)	40, 351
Sse9I	AATT	5 cut(s)	156, 173, 185, 395, 523
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	6, 441
StuI	AGGCCT	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	3 cut(s)	195, 276, 360
TasI	AATT	5 cut(s)	156, 173, 185, 395, 523
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	4 cut(s)	41, 96, 108, 527
Tru9I	TTAA	4 cut(s)	41, 96, 108, 527
TscAI	CASTG	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	241, 242
TspRI	CASTG	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	40
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	120, 265
Zsp2I	ATGCAT	2 cut(s)	235, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.