Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004946

Physical Location & Seq

Genomic Coordinates Reverse (-)

6808652 .. 6809178

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1097800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTGGGTTCCGCGAAAAGTGAAGAAAAGACCTCTCAGGTTGAAAAAGAAGAGGAGCCATTTGAGAGCTTAGAGAAAACATATCAAAAGAAATCAGCAAGTGCCTTTCATCCCAATTTGTTACAAATACCATCAGCAGTCACAAGTGATCAAAAGGGTTCAGCAACTAGAAAAGGAAGAATGGTTTTAAGAGATGGTGATTTTTTGTTGGACGTGTCATCTCTTGCTGCAAAGTTTATGAATCTGTCTCATATTTGTAAATTTGAGGAGAGATCGCCGAATATATGCAGGCAGCAATTTCAGGGGCAGCTTGGCGTGTACGGTCAGATTGCACAGCAATGTACAGTTGTGTTTATGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

7.73

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25630 AT5G25630 AT5G25630
fragaria_vesca	FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130
malus_domestica	MD02G1045100.v1.1 MD08G1118600.v1.1 MD15G1097800.v1.1 MD15G1097900.v1.1
prunus_persica	Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1
pyrus_communis	pycom08g09890
rosa_chinensis	RchiOBHm_Chr6g0305741 RchiOBHm_Chr6g0306351
rosa_laevigata	RLG00000010863 RLG00000021840
rosa_roxburghii	Rroxscaffold_7G00162390
rosa_rugosa	Rorug06G0343700 Rorug06G0343800
rosa_samantha	Rh6AG455200 Rh6BG446100 Rh6CG469100 Rh6DG455700
rosa_wichuraiana	Rw6G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	320, 343
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	44
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	2 cut(s)	69, 310
AluI	AGCT	2 cut(s)	69, 310
Alw26I	GTCTC	1 cut(s)	252
ApeKI	GCWGC	3 cut(s)	227, 292, 307
ApoI	RAATTY	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	209
BbvI	GCAGC	3 cut(s)	214, 304, 319
BccI	CCATC	2 cut(s)	139, 188
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	3 cut(s)	228, 293, 308
BlsI	GCNGC	3 cut(s)	229, 294, 309
BmgBI	CACGTC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	10, 57
Bse3DI	GCAATG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	68, 281
BseXI	GCAGC	3 cut(s)	214, 304, 319
BseYI	CCCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	148, 272
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	10, 57
BsrDI	GCAATG	1 cut(s)	344
BsrGI	TGTACA	1 cut(s)	341
BssMI	GATC	2 cut(s)	148, 272
Bst4CI	ACNGT	2 cut(s)	323, 346
Bst6I	CTCTTC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	36, 70
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	151, 275
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	148, 272
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	214, 304, 319
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	319, 342
CviJI	RGCY	3 cut(s)	58, 69, 310
CviKI_1	RGCY	3 cut(s)	58, 69, 310
CviQI	GTAC	2 cut(s)	319, 342
DdeI	CTNAG	2 cut(s)	36, 70
DpnI	GATC	2 cut(s)	150, 274
DpnII	GATC	2 cut(s)	148, 272
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
FaiI	YATR	6 cut(s)	82, 239, 252, 284, 286, 356
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	228, 293, 308
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	228, 293, 308
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	3 cut(s)	228, 293, 308
GsaI	CCCAGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	1 cut(s)	327
Hpy8I	GTNNAC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	323, 346
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	230, 288, 332, 358
HpyF3I	CTNAG	2 cut(s)	36, 70
HpySE526I	ACGT	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	148, 272
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	3 cut(s)	23, 274, 287
Lsp1109I	GCAGC	3 cut(s)	214, 304, 319
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	120, 139
MalI	GATC	2 cut(s)	150, 274
MboI	GATC	2 cut(s)	148, 272
MboII	GAAGA	3 cut(s)	35, 62, 189
MluCI	AATT	3 cut(s)	115, 260, 296
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	3 cut(s)	43, 46, 259
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	337
MvnI	CGCG	1 cut(s)	14
NdeII	GATC	2 cut(s)	148, 272
NlaIV	GGNNCC	2 cut(s)	10, 57
NmuCI	GTSAC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	229, 294, 309
PspFI	CCCAGC	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	10, 57
RsaI	GTAC	2 cut(s)	320, 343
RsaNI	GTAC	2 cut(s)	319, 342
RseI	CAYNNNNRTG	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	3 cut(s)	228, 293, 308
Sau3AI	GATC	2 cut(s)	148, 272
SetI	ASST	5 cut(s)	35, 42, 71, 216, 312
SmiMI	CAYNNNNRTG	1 cut(s)	337
Sse9I	AATT	3 cut(s)	115, 260, 296
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	323, 346
TaiI	ACGT	1 cut(s)	216
TasI	AATT	3 cut(s)	115, 260, 296
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	227, 292, 307
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	98, 254
XapI	RAATTY	1 cut(s)	260
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.