MD02G1101900.v1.1
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
8188654 .. 8190104
1451 bp
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UTR
Exon/CDS
Intron
MD02G1101900.v1.1.491

Sequence Viewer

Length: 420 bp
ATGAACGCTACAATTTTTGCATACGGGCAGACTAGTAGTGGCAAGACATTTACCATGAGAGGAATCAGCGAAAATGCAGTGAGGGACATCTTCGAACACATCAAGAATACGCCAGAAAGGGATTTTGTTTTGAAATTTTCTGCTTTGGAGATCTACAATGAAACTGTTGTTGATCTTCTGAAATGCAAATCTGGCTCACTTTGGCTTTTGGATGACTCTGAGAAAAGCACCATAGTTGACAAGCCACAGGAAGAAATTGTTGAGAATGGCGAACATTTGAGGCACTTAATTGGAATTTTTGAAGCTCAAAGGCAAGTGGGAGAAACTGCCCTAAATGATAAAAGCTCAAGATCGCATCAGATAATAAGGCTGCTAGACATGATGAATTTATATTTTTTTAAATGTTTCATGAAAGGTTGA

Protein Analysis

140

Amino Acids

15.97

Weight (kDa)

5.8

Isoelectric Point (pI)

23.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 1 - 124 3.5e-35 Kinesin motor domain
Microtub_bd PF16796 1 - 60 2.1e-13 Microtubule binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 134, 294, 385
AgsI TTSAA 2 cut(s) 133, 302
AhlI ACTAGT 1 cut(s) 32
AluBI AGCT 2 cut(s) 305, 345
AluI AGCT 2 cut(s) 305, 345
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 3 cut(s) 134, 294, 385
AsuII TTCGAA 1 cut(s) 93
BbvI GCAGC 1 cut(s) 357
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 2 cut(s) 33, 374
BglII AGATCT 1 cut(s) 150
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
BmsI GCATC 1 cut(s) 364
Bpu14I TTCGAA 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 331
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 357
BslFI GGGAC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 150, 172, 350
BspCNI CTCAG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 93
BssMI GATC 3 cut(s) 150, 172, 350
Bst4CI ACNGT 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 3 cut(s) 153, 175, 353
BstMBI GATC 3 cut(s) 150, 172, 350
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
CciI TCATGA 1 cut(s) 408
CviAII CATG 3 cut(s) 55, 379, 409
CviJI RGCY 6 cut(s) 195, 205, 244, 305, 345, 370
CviKI_1 RGCY 6 cut(s) 195, 205, 244, 305, 345, 370
DdeI CTNAG 1 cut(s) 219
DpnI GATC 3 cut(s) 152, 174, 352
DpnII GATC 3 cut(s) 150, 172, 350
DraI TTTAAA 1 cut(s) 400
FaeI CATG 3 cut(s) 58, 382, 412
FaiI YATR 6 cut(s) 22, 56, 233, 380, 391, 410
FaqI GGGAC 1 cut(s) 98
FatI CATG 3 cut(s) 54, 378, 408
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 2 cut(s) 33, 374
GluI GCNGC 1 cut(s) 371
Hin1II CATG 3 cut(s) 58, 382, 412
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 2 cut(s) 63, 215
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 180, 220, 360
Hpy188III TCNNGA 3 cut(s) 103, 348, 409
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 20, 77, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 3 cut(s) 58, 382, 412
Kzo9I GATC 3 cut(s) 150, 172, 350
LpnPI CCDG 3 cut(s) 126, 177, 233
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 33, 374
MalI GATC 3 cut(s) 152, 174, 352
MboI GATC 3 cut(s) 150, 172, 350
MboII GAAGA 3 cut(s) 82, 167, 263
MflI RGATCY 1 cut(s) 150
MluCI AATT 6 cut(s) 12, 134, 255, 288, 294, 385
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 3 cut(s) 53, 75, 273
MseI TTAA 2 cut(s) 287, 399
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 3 cut(s) 150, 172, 350
NlaIII CATG 3 cut(s) 58, 382, 412
NspV TTCGAA 1 cut(s) 93
PagI TCATGA 1 cut(s) 408
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 1 cut(s) 372
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 150
SaqAI TTAA 2 cut(s) 287, 399
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 3 cut(s) 150, 172, 350
SchI GAGTC 1 cut(s) 209
SetI ASST 3 cut(s) 307, 347, 418
SfaNI GCATC 1 cut(s) 364
SfuI TTCGAA 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 6 cut(s) 12, 134, 255, 288, 294, 385
SspMI CTAG 2 cut(s) 33, 374
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 93
TasI AATT 6 cut(s) 12, 134, 255, 288, 294, 385
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 2 cut(s) 287, 399
Tru9I TTAA 2 cut(s) 287, 399
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 370
TspDTI ATGAA 4 cut(s) 17, 174, 397, 398
TspRI CASTG 1 cut(s) 84
XapI RAATTY 3 cut(s) 134, 294, 385
XspI CTAG 2 cut(s) 33, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.