Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396839.1

Orthogroup ID

OG0005325

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1163

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396839.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

atgtatgatcttattgcctgggactgcctggatgagaacactattgttttcaagaatccaaatcatgagagacctgctaatccatacatatttgataaggtgtttggcccaacgtgctcaactcagaaggtctatgaagatggggctaaggatgttgctttatctgcacttacaggaatgaatgcaacaatttttgcatatgggcagactagtagtggaaagacattcaccatgagaggaatcactgaaaatgctgtcaaggacatttttgaacacatcaagaaaacaccagagaggaagttcattcttaagttttctgcattggagatttacaatgaaactgttgttgaccttctgaaacgcaaatctggccccgttcggcttttggatgatgctgagaaagggaccaatgtggataaattacatgaagaaattattgaagatggccaacatttgaaacatttgattggaatatgtgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

160

Amino Acids

18.08

Weight (kDa)

5.56

Isoelectric Point (pI)

21.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43210 AT3G43210 AT3G43210 AT3G43210 AT3G43210
fragaria_vesca	FvH4_1g09380 FvH4_1g09380
malus_domestica	MD02G1101100.v1.1 MD02G1101900.v1.1 MD02G1106600.v1.1 MD15G1223600.v1.1
prunus_persica	Prupe.7G192200_v2.0.a1 Prupe.7G192200_v2.0.a1
pyrus_communis	pycom06g19620 pycom15g19780
rosa_chinensis	RchiOBHm_Chr2g0095931
rosa_laevigata	RLG00000016607
rosa_multiflora	Rmu_co8396839.1_g000001 Rmu_sc0022801.1_g000001 Rmu_sc0025188.1_g000001 Rmu_sc0043120.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145950 Rroxscaffold_2G00145960
rosa_rugosa	Rorug02G0054000
rosa_samantha	Rh2AG103100 Rh2BG104500 Rh2CG107000 Rh2DG104800
rosa_wichuraiana	Rw2G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	445
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	52, 272, 440, 457
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	17, 27
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	3 cut(s)	106, 370, 445
AspS9I	GGNCC	3 cut(s)	107, 371, 405
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	2 cut(s)	134, 437
BciT130I	CCWGG	2 cut(s)	19, 29
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	19, 29
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	3 cut(s)	107, 371, 405
BmiI	GGNNCC	2 cut(s)	373, 406
BmrFI	CCNGG	2 cut(s)	19, 29
BmsI	GCATC	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	19, 29
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	37, 157, 394
BseMII	CTCAG	2 cut(s)	137, 387
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	108, 372, 447
BsiHKAI	GWGCWC	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	35, 418
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	35, 418
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	108, 372, 447
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	3 cut(s)	108, 372, 447
BspCNI	CTCAG	2 cut(s)	136, 388
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	373, 406
BspMI	ACCTGC	1 cut(s)	82
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	19, 29
Bst4CI	ACNGT	1 cut(s)	343
BstAFI	CTTAAG	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	123, 147, 396
BstF5I	GGATG	3 cut(s)	37, 157, 394
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 164, 369
BstNI	CCWGG	2 cut(s)	19, 29
BstSCI	CCNGG	2 cut(s)	17, 27
BsuRI	GGCC	3 cut(s)	108, 372, 447
BtsCI	GGATG	3 cut(s)	37, 157, 394
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	82
CciI	TCATGA	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	107, 371, 405
CviAII	CATG	3 cut(s)	65, 232, 425
CviJI	RGCY	5 cut(s)	108, 146, 372, 382, 447
CviKI_1	RGCY	5 cut(s)	108, 146, 372, 382, 447
DdeI	CTNAG	3 cut(s)	123, 147, 396
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	17, 27
FaeI	CATG	3 cut(s)	68, 235, 428
FaqI	GGGAC	2 cut(s)	35, 418
FatI	CATG	3 cut(s)	64, 231, 424
FauNDI	CATATG	1 cut(s)	199
FokI	GGATG	3 cut(s)	44, 164, 401
FspBI	CTAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	108, 372, 447
Hin1II	CATG	3 cut(s)	68, 235, 428
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	55, 240
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	126, 357
Hpy188III	TCNNGA	3 cut(s)	52, 65, 280
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	2 cut(s)	121, 362
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	167, 185, 197, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 164, 369
HpyF3I	CTNAG	3 cut(s)	123, 147, 396
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	68, 235, 428
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	8 cut(s)	4, 14, 31, 41, 87, 159, 303, 354
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	113
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	3 cut(s)	149, 440, 452
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	3 cut(s)	189, 419, 432
MluNI	TGGCCA	1 cut(s)	447
MnlI	CCTC	2 cut(s)	230, 288
Mox20I	TGGCCA	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	447
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	19, 29
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	2 cut(s)	19, 29
MwoI	GCNNNNNNNGC	3 cut(s)	114, 164, 369
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	68, 235, 428
NlaIV	GGNNCC	2 cut(s)	373, 406
PagI	TCATGA	1 cut(s)	64
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	55, 240
Psp6I	CCWGG	2 cut(s)	17, 27
PspGI	CCWGG	2 cut(s)	17, 27
PspN4I	GGNNCC	2 cut(s)	373, 406
PspPI	GGNCC	3 cut(s)	107, 371, 405
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	3 cut(s)	107, 371, 405
ScrFI	CCNGG	2 cut(s)	19, 29
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	5 cut(s)	76, 102, 116, 132, 354
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	3 cut(s)	189, 419, 432
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	17, 27
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	116
TasI	AATT	3 cut(s)	189, 419, 432
TfiI	GAWTC	2 cut(s)	55, 240
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	250
TspDTI	ATGAA	5 cut(s)	150, 194, 292, 351, 441
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	405
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.