Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005325

Physical Location & Seq

Genomic Coordinates Forward (+)

4142163 .. 4144330

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTGTTAGAAACCAAGAGCCTTTCATCAGCCATGAATGCTAAAATCGTGGGCACGGGGAGTGAGTCCATAGTCTTAGCACATGGCTATGGGGGAGACCAGTCTGTCTGGGACAAAATCCTTCCCTACTTGGCTCAACATTACAGTGTTCTTGTTTTCGACTGGACCTTTTCGGGTGCTGCTAAGGACCCCAACCTCTTTGATCCTGCCAAATATTCGAGCTACGATGATTTTGCTCATGACTTGATTGCTCTATTGGATGAACTTAACTTGAAATCCTCAGTCTATGTTGGCCACTCCATGTCTGGTATGGTTGGATGCATTGCTTCTATCAAGAGACCTGACCTCTTTAGCAGCCTCATACTTATTGGAGCTTCTCCTAGGTATATGAATACAGATGACTATGAAGGTGGGTTTGGGAGTTCAGACATTAAGCAAATCCTCTCAAGCATAGAATCCAACTTTCACAACTGGGCTGCTCACTTTGCTTCCCTTGTTGTGGACTCAAATGACCCTCTCTCTGTTGACAAGTTTACCAAGTGCCTGCAAAAAATGAGACCTGAATTTGCACTTGCTGTAGGAAAAATCGTCTTTTATAGCGACGAAAGAGACACTCTCGACAAGGTCTCAACTCCATGCACTATCATCCACACCAGCAGTGACATTGTCTCTCCAAAATCGGTCGCGTTTTACATGCAGAAGAAAATCAAGGAAAACCCCAAAGTGGAGATTATGAATACTAATGGCCATTTCCCACAGTTGACTGCACACATTGAGCTTCTTGATGTGCTAGGACTCATCTTGGGGGTTGAATTGGATCTTGATCTTGATCTTAAACCAAGATTGGGCAAATTATCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

287

Amino Acids

31.58

Weight (kDa)

5.31

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	23 - 237	6.9e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	24 - 255	6.3e-18	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	24 - 256	2.5e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43210 AT3G43210 AT3G43210 AT3G43210 AT3G43210
fragaria_vesca	FvH4_1g09380 FvH4_1g09380
malus_domestica	MD02G1101100.v1.1 MD02G1101900.v1.1 MD02G1106600.v1.1 MD15G1223600.v1.1
prunus_persica	Prupe.7G192200_v2.0.a1 Prupe.7G192200_v2.0.a1
pyrus_communis	pycom06g19620 pycom15g19780
rosa_chinensis	RchiOBHm_Chr2g0095931
rosa_laevigata	RLG00000016607
rosa_multiflora	Rmu_co8396839.1_g000001 Rmu_sc0022801.1_g000001 Rmu_sc0025188.1_g000001 Rmu_sc0043120.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145950 Rroxscaffold_2G00145960
rosa_rugosa	Rorug02G0054000
rosa_samantha	Rh2AG103100 Rh2BG104500 Rh2CG107000 Rh2DG104800
rosa_wichuraiana	Rw2G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	686
AclWI	GGATC	2 cut(s)	197, 825
AcoI	YGGCCR	2 cut(s)	292, 745
AcsI	RAATTY	1 cut(s)	563
AfiI	CCNNNNNNNGG	3 cut(s)	499, 724, 845
AgsI	TTSAA	2 cut(s)	274, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	3 cut(s)	222, 374, 778
AluI	AGCT	3 cut(s)	222, 374, 778
Alw26I	GTCTC	6 cut(s)	90, 331, 550, 603, 631, 673
AlwI	GGATC	2 cut(s)	197, 825
AoxI	GGCC	2 cut(s)	292, 745
ApeKI	GCWGC	3 cut(s)	179, 354, 476
ApoI	RAATTY	1 cut(s)	563
AspA2I	CCTAGG	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	165, 187
AvaII	GGWCC	2 cut(s)	165, 187
AvrII	CCTAGG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	56
BalI	TGGCCA	2 cut(s)	294, 747
BbvI	GCAGC	3 cut(s)	166, 366, 463
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcoDI	GTCTC	6 cut(s)	90, 331, 550, 603, 631, 673
BfaI	CTAG	2 cut(s)	381, 791
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	3 cut(s)	180, 355, 477
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	3 cut(s)	181, 356, 478
Bme18I	GGWCC	2 cut(s)	165, 187
BmgT120I	GGNCC	2 cut(s)	165, 187
BmiI	GGNNCC	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	481
BplI	GAGNNNNNCTC	2 cut(s)	600, 632
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	430
BsaBI	GATNNNNATC	2 cut(s)	822, 828
BsaI	GGTCTC	4 cut(s)	90, 331, 550, 631
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	3 cut(s)	499, 724, 845
Bse1I	ACTGG	3 cut(s)	100, 167, 476
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	2 cut(s)	822, 828
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	3 cut(s)	265, 323, 645
BseJI	GATNNNNATC	2 cut(s)	822, 828
BseLI	CCNNNNNNNGG	3 cut(s)	499, 724, 845
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	3 cut(s)	100, 167, 476
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	166, 366, 463
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	1 cut(s)	686
Bsh1285I	CGRYCG	1 cut(s)	684
BshFI	GGCC	2 cut(s)	294, 747
BsiEI	CGRYCG	1 cut(s)	684
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	499, 724, 845
BsmAI	GTCTC	6 cut(s)	90, 331, 550, 603, 631, 673
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	294, 747
Bso31I	GGTCTC	4 cut(s)	90, 331, 550, 631
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	4 cut(s)	202, 817, 823, 829
BspANI	GGCC	2 cut(s)	294, 747
BspCNI	CTCAG	1 cut(s)	293
BspFNI	CGCG	1 cut(s)	686
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	197, 825
BspTNI	GGTCTC	4 cut(s)	90, 331, 550, 631
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	100, 167, 476
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	4 cut(s)	202, 817, 823, 829
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	146, 759
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	3 cut(s)	76, 183, 280
BstF5I	GGATG	3 cut(s)	265, 323, 645
BstFNI	CGCG	1 cut(s)	686
BstKTI	GATC	4 cut(s)	205, 820, 826, 832
BstMAI	GTCTC	6 cut(s)	90, 331, 550, 603, 631, 673
BstMBI	GATC	4 cut(s)	202, 817, 823, 829
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 485
BstNSI	RCATGY	1 cut(s)	697
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	56
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	3 cut(s)	166, 366, 463
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuRI	GGCC	2 cut(s)	294, 747
BtsCI	GGATG	3 cut(s)	265, 323, 645
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	2 cut(s)	151, 664
Cac8I	GCNNGC	1 cut(s)	545
CciI	TCATGA	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	165, 187
CviAII	CATG	7 cut(s)	34, 83, 239, 301, 636, 694, 858
DdeI	CTNAG	3 cut(s)	76, 183, 280
DpnI	GATC	4 cut(s)	204, 819, 825, 831
DpnII	GATC	4 cut(s)	202, 817, 823, 829
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	2 cut(s)	292, 745
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	4 cut(s)	90, 331, 550, 631
Eco47I	GGWCC	2 cut(s)	165, 187
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	7 cut(s)	37, 86, 242, 304, 639, 697, 861
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	7 cut(s)	33, 82, 238, 300, 635, 693, 857
Fnu4HI	GCNGC	3 cut(s)	180, 355, 477
FokI	GGATG	3 cut(s)	272, 330, 632
Fsp4HI	GCNGC	3 cut(s)	180, 355, 477
FspBI	CTAG	2 cut(s)	381, 791
GluI	GCNGC	3 cut(s)	180, 355, 477
HaeIII	GGCC	2 cut(s)	294, 747
Hin1II	CATG	7 cut(s)	37, 86, 242, 304, 639, 697, 861
HincII	GTYRAC	2 cut(s)	526, 762
HindII	GTYRAC	2 cut(s)	526, 762
HinfI	GANTC	4 cut(s)	65, 455, 503, 795
Hpy166II	GTNNAC	4 cut(s)	502, 526, 534, 762
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	6 cut(s)	239, 334, 617, 782, 821, 827
Hpy8I	GTNNAC	4 cut(s)	502, 526, 534, 762
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	131, 401
HpyCH4III	ACNGT	2 cut(s)	146, 759
HpyCH4V	TGCA	6 cut(s)	321, 547, 569, 639, 697, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 485
HpyF3I	CTNAG	3 cut(s)	76, 183, 280
Hsp92II	CATG	7 cut(s)	37, 86, 242, 304, 639, 697, 861
Kzo9I	GATC	4 cut(s)	202, 817, 823, 829
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	3 cut(s)	166, 366, 463
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	2 cut(s)	381, 791
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	4 cut(s)	204, 819, 825, 831
MboI	GATC	4 cut(s)	202, 817, 823, 829
MboII	GAAGA	1 cut(s)	712
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	56
MlsI	TGGCCA	2 cut(s)	294, 747
MluCI	AATT	3 cut(s)	563, 812, 851
MluNI	TGGCCA	2 cut(s)	294, 747
MlyI	GAGTC	3 cut(s)	74, 497, 789
MmeI	TCCRAC	2 cut(s)	295, 483
MnlI	CCTC	6 cut(s)	206, 289, 356, 368, 452, 525
Mox20I	TGGCCA	2 cut(s)	294, 747
Mph1103I	ATGCAT	1 cut(s)	323
MscI	TGGCCA	2 cut(s)	294, 747
MseI	TTAA	3 cut(s)	267, 432, 834
MslI	CAYNNNNRTG	2 cut(s)	87, 144
Msp20I	TGGCCA	2 cut(s)	294, 747
Mva1269I	GAATGC	1 cut(s)	43
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	2 cut(s)	38, 485
NdeII	GATC	4 cut(s)	202, 817, 823, 829
NlaIII	CATG	7 cut(s)	37, 86, 242, 304, 639, 697, 861
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	1 cut(s)	697
PagI	TCATGA	1 cut(s)	238
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	455
PflFI	GACNNNGTC	2 cut(s)	623, 665
PkrI	GCNGC	3 cut(s)	181, 356, 478
PleI	GAGTC	3 cut(s)	73, 497, 789
PpsI	GAGTC	3 cut(s)	73, 497, 789
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	2 cut(s)	165, 187
PspPPI	RGGWCCY	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	817
PsyI	GACNNNGTC	2 cut(s)	623, 665
RseI	CAYNNNNRTG	2 cut(s)	87, 144
SaqAI	TTAA	3 cut(s)	267, 432, 834
SatI	GCNGC	3 cut(s)	180, 355, 477
Sau3AI	GATC	4 cut(s)	202, 817, 823, 829
Sau96I	GGNCC	2 cut(s)	165, 187
SchI	GAGTC	3 cut(s)	74, 497, 789
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	2 cut(s)	165, 187
SmiMI	CAYNNNNRTG	2 cut(s)	87, 144
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	3 cut(s)	563, 812, 851
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	2 cut(s)	381, 791
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	2 cut(s)	146, 759
TaqI	TCGA	3 cut(s)	159, 218, 618
TaqII	GACCGA	1 cut(s)	670
TasI	AATT	3 cut(s)	563, 812, 851
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	3 cut(s)	267, 432, 834
Tru9I	TTAA	3 cut(s)	267, 432, 834
TscAI	CASTG	2 cut(s)	151, 664
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	3 cut(s)	179, 354, 476
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	6 cut(s)	15, 50, 276, 404, 420, 749
TspRI	CASTG	2 cut(s)	151, 664
Tth111I	GACNNNGTC	2 cut(s)	623, 665
VpaK11BI	GGWCC	2 cut(s)	165, 187
XapI	RAATTY	1 cut(s)	563
XceI	RCATGY	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	2 cut(s)	302, 307
XmaJI	CCTAGG	1 cut(s)	380
XspI	CTAG	2 cut(s)	381, 791
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.