Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005325

Physical Location & Seq

Genomic Coordinates Reverse (-)

83803337 .. 83805687

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTGGGACACCGGCGACGCCGACATCTAAACTCCATAGGACTACTTGTTCCACTCCGGGTGGTTCAAGAGTTCGTGAGGAGAAAATCCTGGTCACTGTTCGATTGAGGCCACTGAATCGGAGAGAGCAGGCAATGTATGATCTTATTGCCTGGGACTGCCTGGATGAGAACACTATTGTTTTCAAGAATCCAAATCATGAGAGACCTGCTAATCCATACATATTTGATAAGGTGTTTGGCCCAACGTGCTCAACTCAGAAGGTCTATGAAGAAGGGGCTAAGGATGTTGCTTTATCTGCACTTACAGGAATGAATGGTAACTTAACATATACAACAATTTTTGCATATGGGCAGACTAGTAGTGGAAAGACATTCACCATGAGAGGAATCACTGAAAATGCTGTCAAGGACATTTTTGAACACATCAAGAAAACACCGGAGAGGAAGTTCATTCTTAAGTTTTCTGCATTGGAGATTTACAATGAAACTGTTGTTGACCTTCTGAAACGCAAATCTGGCTCTGTCCGGCTTTTGGATGATGCTGAGAAAGGGACCAATGTGGATAAGTTACATGAAGAAATTATTGAAGATGGCCAACATTTGAAACATTTGATTGGAATTTGTGAAGGTAATTTATTGATTCAAGTGAATTATGTTCAGCCATCATTTGAAAACCTTGTGGACTTAGCTGGAAGTGAACGTGCCTCCCAGACAAATGCAGATGGTACAAGGTTGAAGGAAGGTAGTCATATAAACCGCAGCTTGCTAACACTCACAACAGTTATCAGGAAGCTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

267

Amino Acids

29.91

Weight (kDa)

8.58

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	32 - 169	1.5e-19	Microtubule binding
Kinesin	PF00225	35 - 211	1.9e-37	Kinesin motor domain
Kinesin	PF00225	226 - 267	1.8e-13	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43210 AT3G43210 AT3G43210 AT3G43210 AT3G43210
fragaria_vesca	FvH4_1g09380 FvH4_1g09380
malus_domestica	MD02G1101100.v1.1 MD02G1101900.v1.1 MD02G1106600.v1.1 MD15G1223600.v1.1
prunus_persica	Prupe.7G192200_v2.0.a1 Prupe.7G192200_v2.0.a1
pyrus_communis	pycom06g19620 pycom15g19780
rosa_chinensis	RchiOBHm_Chr2g0095931
rosa_laevigata	RLG00000016607
rosa_multiflora	Rmu_co8396839.1_g000001 Rmu_sc0022801.1_g000001 Rmu_sc0025188.1_g000001 Rmu_sc0043120.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145950 Rroxscaffold_2G00145960
rosa_rugosa	Rorug02G0054000
rosa_samantha	Rh2AG103100 Rh2BG104500 Rh2CG107000 Rh2DG104800
rosa_wichuraiana	Rw2G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AciI	CCGC	1 cut(s)	760
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	1 cut(s)	535
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	8 cut(s)	69, 187, 422, 590, 607, 647, 674, 739
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	3 cut(s)	90, 152, 162
AloI	GAACNNNNNNTCC	4 cut(s)	34, 66, 434, 466
AluBI	AGCT	3 cut(s)	692, 765, 796
AluI	AGCT	3 cut(s)	692, 765, 796
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	3 cut(s)	110, 241, 595
ApeKI	GCWGC	1 cut(s)	762
ApoI	RAATTY	1 cut(s)	621
AspS9I	GGNCC	2 cut(s)	242, 555
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	774
BccI	CCATC	3 cut(s)	587, 673, 719
BciT130I	CCWGG	3 cut(s)	92, 154, 164
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	199
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	763
BlsI	GCNGC	1 cut(s)	764
Bme1390I	CCNGG	4 cut(s)	60, 92, 154, 164
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	2 cut(s)	242, 555
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	4 cut(s)	60, 92, 154, 164
BmsI	GCATC	1 cut(s)	532
Bpu10I	CCTNAGC	2 cut(s)	282, 797
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse118I	RCCGGY	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	92, 154, 164
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	3 cut(s)	172, 292, 544
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	272, 537
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	774
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	112, 243, 597
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	14, 59, 440, 529
BslFI	GGGAC	3 cut(s)	22, 170, 568
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	3 cut(s)	22, 170, 568
BsnI	GGCC	3 cut(s)	112, 243, 597
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	3 cut(s)	112, 243, 597
BspCNI	CTCAG	2 cut(s)	271, 538
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	142
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	3 cut(s)	92, 154, 164
Bst4CI	ACNGT	3 cut(s)	100, 493, 784
BstACI	GRCGYC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	132, 767
BstDEI	CTNAG	5 cut(s)	258, 282, 546, 688, 797
BstF5I	GGATG	3 cut(s)	172, 292, 544
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 299, 519
BstNI	CCWGG	3 cut(s)	92, 154, 164
BstSCI	CCNGG	4 cut(s)	58, 90, 152, 162
BstV1I	GCAGC	1 cut(s)	774
BsuRI	GGCC	3 cut(s)	112, 243, 597
BtsCI	GGATG	3 cut(s)	172, 292, 544
BtsIMutI	CAGTG	3 cut(s)	96, 113, 393
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	132, 767
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	242, 555
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	3 cut(s)	200, 382, 575
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	5 cut(s)	258, 282, 546, 688, 797
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	555
EcoRII	CCWGG	3 cut(s)	90, 152, 162
FaeI	CATG	3 cut(s)	203, 385, 578
FaqI	GGGAC	3 cut(s)	22, 170, 568
FatI	CATG	3 cut(s)	199, 381, 574
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	763
FokI	GGATG	3 cut(s)	179, 299, 551
Fsp4HI	GCNGC	1 cut(s)	763
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	763
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	3 cut(s)	112, 243, 597
HapII	CCGG	4 cut(s)	14, 59, 440, 529
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	203, 385, 578
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	4 cut(s)	118, 190, 390, 643
HpaII	CCGG	4 cut(s)	14, 59, 440, 529
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	3 cut(s)	499, 685, 701
Hpy188I	TCNGA	3 cut(s)	123, 261, 507
Hpy188III	TCNNGA	6 cut(s)	69, 77, 187, 200, 430, 790
Hpy8I	GTNNAC	3 cut(s)	499, 685, 701
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	6 cut(s)	256, 269, 512, 623, 733, 737
HpyCH4III	ACNGT	3 cut(s)	100, 493, 784
HpyCH4IV	ACGT	2 cut(s)	248, 703
HpyCH4V	TGCA	4 cut(s)	302, 347, 470, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 299, 519
HpyF3I	CTNAG	5 cut(s)	258, 282, 546, 688, 797
HpySE526I	ACGT	2 cut(s)	248, 703
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	203, 385, 578
Kzo9I	GATC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	774
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	248, 703
MaeIII	GTNAC	3 cut(s)	94, 320, 570
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	284, 590, 602
MhlI	GDGCHC	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	597
MluCI	AATT	5 cut(s)	339, 582, 621, 634, 652
MluNI	TGGCCA	1 cut(s)	597
MnlI	CCTC	5 cut(s)	73, 102, 380, 438, 718
Mox20I	TGGCCA	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	2 cut(s)	326, 459
Msp20I	TGGCCA	1 cut(s)	597
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	4 cut(s)	14, 59, 440, 529
MspR9I	CCNGG	4 cut(s)	60, 92, 154, 164
MvaI	CCWGG	3 cut(s)	92, 154, 164
MwoI	GCNNNNNNNGC	3 cut(s)	249, 299, 519
NciI	CCSGG	1 cut(s)	60
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	203, 385, 578
NlaIV	GGNNCC	1 cut(s)	556
NmuCI	GTSAC	1 cut(s)	94
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	118, 190, 390, 643
PkrI	GCNGC	1 cut(s)	764
Psp6I	CCWGG	3 cut(s)	90, 152, 162
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	3 cut(s)	90, 152, 162
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	2 cut(s)	242, 555
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
SaqAI	TTAA	2 cut(s)	326, 459
SatI	GCNGC	1 cut(s)	763
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	2 cut(s)	242, 555
ScrFI	CCNGG	4 cut(s)	60, 92, 154, 164
SduI	GDGCHC	1 cut(s)	254
SfaNI	GCATC	1 cut(s)	532
SgrAI	CRCCGGYG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	5 cut(s)	339, 582, 621, 634, 652
SsiI	CCGC	1 cut(s)	760
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	4 cut(s)	58, 90, 152, 162
TaaI	ACNGT	3 cut(s)	100, 493, 784
TaiI	ACGT	2 cut(s)	251, 706
TaqI	TCGA	1 cut(s)	103
TasI	AATT	5 cut(s)	339, 582, 621, 634, 652
TfiI	GAWTC	4 cut(s)	118, 190, 390, 643
Tru1I	TTAA	2 cut(s)	326, 459
Tru9I	TTAA	2 cut(s)	326, 459
TscAI	CASTG	3 cut(s)	103, 120, 400
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	762
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	5 cut(s)	285, 329, 442, 501, 591
TspRI	CASTG	3 cut(s)	103, 120, 400
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	1 cut(s)	621
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.