Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005325

Physical Location & Seq

Genomic Coordinates Forward (+)

8553499 .. 8559308

Gene Structure 5810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG104800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGATGGCTGGGACACCGGCGACGCCGACGTCTAAACTCCATAGGACTACTTGTTCCACTCCGGGTGGTTCAAGAGTTCGTGAGGAGAAAATCTTGGTCACTGTTCGATTGAGGCCGCTGAATCGGAGAGAGCAGGCAATGTATGATCTTATTGCCTGGGACTGCCTGGATGAGAACACTATTGTTTTCAAGAATCCAAATCATGAGAGACCTGCTAATCCATACATATTTGATAAGGTGTTTGGCCCAACGTGCTCAACTCAGAAGGTCTATGAAGAAGGGGCTAAGGATGTTGCTTTATCTGCACTTACAGGAATGAATGCAACAATTTTTGCATATGGGCAGACTAGTAGTGGAAAGACATTCACCATGAGAGGAATCACTGAAAATGCTGTCAAGGACATTTTTGAACACATCCAGAAAACACCAGAGAGGAAGTTCATTCTTAAGTTTTCTGCATTGGAGATTTACAATGAAACTGTTGTTGATCTTCTGAAACGCAAATCTGGCCCCGTTCGGCTTTTGGATGATGCTGAGAAAGGGACCAATGTGGATAAATTACATGAAGAAATTATTGAAGATGGCCAACATTTGAAACATTTGATTGGAATATGTGAAGCTCAAAGGCAAGTGGGAGAAACTGCCCTAAATGATAAAAGCTCAAGATCACATCAGATAATCAGGCTGACCATAGAGAGCAGCCTCCGAGAGAGTTCAGGCTCAGTGAAGTCTTTTGGAGCCAGTTTGAACCTTGTGGACTTAGCTGGAAGTGAACGTGCCTCCCAGACAAATGCAGATGGTACAAGGTTGAAGGAAGGTAGTCATATAAACCGCAGCTTGCTAACACTCACAACAGTTATCAGGAAGCTAAGTGGTGGAAAAAGAAGTGGCCACATACCATACAGGGATTCAAAACTTACACGAATTTTGCAGTCTTCACTCGGGGGGAATGCTCGGACTGCTATTATATGTACTGTGAGCCCAGCTTTAAGTCATGTAGAGCAGACAAGAAATACACTGTCATTTGCAACTAGTGCCAAGGAGGTCACCAATACTGCAAAAATAAACATGAGAATAGCCAGACTTGAAGCAGAGCTGCGAAGTCCAGAGCCTTCTGCGCTTAAGTCCATACTAGAAGAAAAGGACTTGAAAATCAAGCAGATGGAGAGGGAACTGGAAGAGCTAAAGCGACAAAGAGACCTTGCACAATCACAACTTGAATTAGAACGGAAAGTAAACAAAGTGCAGAAGGGAGCGAACCAATGCGGACCTTCTTCTGAAGTTGTTAGGCGTCTTTCTTTTCCAGGAGAGAATGAAACAGTTGCTACTACTCCACAGTCTCATACAAGAAATGCAGTTCGAAGGCAGTCAATTATGAGGAGATCAGTAACTTCTACAGATCCATCCATGCTTGTGAATGAAATCCGAAAGTTAGAGCAGAGACAGAGGCAGCTCGGTGATGAGGCAAATCGAGCACTTGAAGTACTGCACAAGGAGGTAGCTACCCATCGACTGGGAAATCAGGAAACTACTGAAACTATAGCAAAACTGCTGTCTGAGATAAAGGACATACAAGCAGTTAGCTCCATTCCTGAAGAATCTATGATTGGAGGTGAGACCAATCTGAAGGAAGAGATCACTCGATGGAAATCTCAGGCAGGCAATATTGAATCTTTAGAAAGGAAGCTTGAGAATGTTCAGAAATCTATAGACCAGCTGGCTTCTGCTTTTGCAACTAGTGAGGAAACTTCAGAATGCAAGACCCCGTCAAAAAAGAAGAAACTCCTTCCTTTCACCCTAAGCAATAGTACAAATATGCAGCATCTAATCCGGTCTCCTTGCTCACCTATGACCCCTTCGAGGAAAGTGATGGATTATGAGACTGAGAACAAGGTGCCTGAGAACAACGATGCTATGCCTAGCGATAACATCGCCATGTCTGGGAGGTCTAAATCTACTCCACCAAAGAGTGATGAAAATGGTACCCGTAAATCATCCAAAGAGAGAAGTCCTGCTGCTCCGCAATCATCAGTTAATGTGAAAAAAATGCAGAGGATGTTCAAGAATGCTGCAGAGGAGAATATACGCAGCATTAGAACTTATGTTACTGAGTTAAAAGAGCGGGTATTAAAGCTCCAATACCAGAAGAACCTTCTGTTGTGCCAGGTAATTTCAATGGAGGAGGACAAAGAAGCTGGAACAGACGAGACAGATAAAATCGATGAATCTATTCCATTGGCATGGCACCTGACTTTTGAAGAGGATAGAAAAGAAATTGTCATGCTATGGCATTTGTGCCATGTTTCAATTACTCACCGCAGCCAATTTTATCTGTTGTTCAAGGGCGACCCTTCTGATCAGATATACATGGAAGTTGAACTGAGAAGATTGCAGTGGTTGGAACGACATTTCTCCGATCTTGGTAATGCTAGTCCAGCACTTCTAGGTGACGAACCTGCAGGCACTGTTTCAGCAAGTATCAAGGCTCTTAAGCAAGAAAGGGAGTATCTGGCCAAGAGGGTGAGCTCTAAGCTAACAGCAGACGAAAGAGAGATGCTGTATGCGAAATGGGATATCCCTCCAGGCGGAAAACAAAGGAGGCTGCAGCTGGTAAACAAGCTGTGGACTGACCCTCATAACATGCAACATGTACAGGAGAGTGCTGAAATCGTCGCCAAGCTGGTTGGATTCTGTGAATCTGGTGAACCTGCTAGCAAGGAGATGTTCGAACTCAATTTTGCGTGCCCTTCTGATAAGAAGACATGGTTGGGCTGGAATTTGATATCGAATCTTTTAAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

934

Amino Acids

105.17

Weight (kDa)

8.82

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	33 - 165	1.3e-21	Microtubule binding
Kinesin	PF00225	36 - 349	3.3e-101	Kinesin motor domain
DUF3490	PF11995	752 - 915	2.1e-67	Domain of unknown function (DUF3490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43210 AT3G43210 AT3G43210 AT3G43210 AT3G43210
fragaria_vesca	FvH4_1g09380 FvH4_1g09380
malus_domestica	MD02G1101100.v1.1 MD02G1101900.v1.1 MD02G1106600.v1.1 MD15G1223600.v1.1
prunus_persica	Prupe.7G192200_v2.0.a1 Prupe.7G192200_v2.0.a1
pyrus_communis	pycom06g19620 pycom15g19780
rosa_chinensis	RchiOBHm_Chr2g0095931
rosa_laevigata	RLG00000016607
rosa_multiflora	Rmu_co8396839.1_g000001 Rmu_sc0022801.1_g000001 Rmu_sc0025188.1_g000001 Rmu_sc0043120.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145950 Rroxscaffold_2G00145960
rosa_rugosa	Rorug02G0054000
rosa_samantha	Rh2AG103100 Rh2BG104500 Rh2CG107000 Rh2DG104800
rosa_wichuraiana	Rw2G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AatII	GACGTC	1 cut(s)	32
Acc36I	ACCTGC	3 cut(s)	220, 2464, 2716
Acc65I	GGTACC	1 cut(s)	1982
AccB1I	GGYRCC	3 cut(s)	1894, 1982, 2244
AccB7I	CCANNNNNTGG	1 cut(s)	1513
AccBSI	CCGCTC	1 cut(s)	2122
AciI	CCGC	7 cut(s)	116, 832, 1266, 2021, 2122, 2317, 2586
AclWI	GGATC	1 cut(s)	1394
AcoI	YGGCCR	3 cut(s)	583, 889, 2511
AcsI	RAATTY	2 cut(s)	924, 2776
AcuI	CTGAAG	4 cut(s)	1299, 1614, 1646, 1734
AcyI	GRCGYC	3 cut(s)	23, 29, 1291
AfaI	GTAC	6 cut(s)	802, 973, 1485, 1810, 1984, 2652
AfiI	CCNNNNNNNGG	4 cut(s)	1513, 1860, 1941, 2585
AflII	CTTAAG	3 cut(s)	446, 1121, 2489
AflIII	ACRYGT	1 cut(s)	2647
AhlI	ACTAGT	3 cut(s)	347, 1031, 1736
AjnI	CCWGG	5 cut(s)	155, 165, 1303, 2163, 2581
AjuI	GAANNNNNNNTTGG	4 cut(s)	1590, 1622, 2750, 2782
AloI	GAACNNNNNNTCC	2 cut(s)	37, 69
Alw21I	GWGCWC	3 cut(s)	257, 1477, 2528
Alw26I	GTCTC	8 cut(s)	202, 1191, 1344, 1435, 1610, 1839, 1874, 2201
AlwI	GGATC	1 cut(s)	1394
AlwNI	CAGNNNCTG	1 cut(s)	2465
Ama87I	CYCGRG	1 cut(s)	941
AoxI	GGCC	6 cut(s)	113, 244, 508, 583, 889, 2511
ApoI	RAATTY	2 cut(s)	924, 2776
ArsI	GACNNNNNNTTYG	2 cut(s)	1538, 1570
Asp700I	GAANNNNTTC	1 cut(s)	2229
Asp718I	GGTACC	1 cut(s)	1982
AspLEI	GCGC	1 cut(s)	1120
AspS9I	GGNCC	4 cut(s)	245, 509, 543, 1268
AsuC2I	CCSGG	1 cut(s)	63
AsuII	TTCGAA	2 cut(s)	1360, 2727
AsuNHI	GCTAGC	1 cut(s)	2711
AvaI	CYCGRG	1 cut(s)	941
AvaII	GGWCC	2 cut(s)	543, 1268
BaeGI	GKGCMC	1 cut(s)	2747
BalI	TGGCCA	3 cut(s)	585, 891, 2513
BanI	GGYRCC	3 cut(s)	1894, 1982, 2244
BanII	GRGCYC	2 cut(s)	983, 2528
BbsI	GAAGAC	2 cut(s)	927, 2765
Bbv12I	GWGCWC	3 cut(s)	257, 1477, 2528
BccI	CCATC	7 cut(s)	575, 791, 1156, 1411, 1515, 1638, 1864
BciT130I	CCWGG	5 cut(s)	157, 167, 1305, 2165, 2583
BclI	TGATCA	1 cut(s)	2356
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	8 cut(s)	202, 1191, 1344, 1435, 1610, 1839, 1874, 2201
BcuI	ACTAGT	3 cut(s)	347, 1031, 1736
BfaI	CTAG	8 cut(s)	348, 1032, 1133, 1737, 1920, 2430, 2444, 2712
BfmI	CTRYAG	6 cut(s)	1395, 1539, 1707, 2070, 2457, 2603
BfrI	CTTAAG	3 cut(s)	446, 1121, 2489
BfuAI	ACCTGC	3 cut(s)	220, 2464, 2716
BmcAI	AGTACT	1 cut(s)	1485
Bme1390I	CCNGG	6 cut(s)	63, 157, 167, 1305, 2165, 2583
Bme18I	GGWCC	2 cut(s)	543, 1268
BmeT110I	CYCGRG	1 cut(s)	941
BmgT120I	GGNCC	4 cut(s)	245, 509, 543, 1268
BmiI	GGNNCC	6 cut(s)	511, 544, 739, 1896, 1984, 2246
BmrFI	CCNGG	6 cut(s)	63, 157, 167, 1305, 2165, 2583
BmrI	ACTGGG	1 cut(s)	1523
BmsI	GCATC	4 cut(s)	520, 1831, 1900, 2544
BmtI	GCTAGC	1 cut(s)	2715
BmuI	ACTGGG	1 cut(s)	1523
BpiI	GAAGAC	2 cut(s)	927, 2765
BpmI	CTGGAG	1 cut(s)	2565
Bpu10I	CCTNAGC	2 cut(s)	285, 1799
Bpu14I	TTCGAA	2 cut(s)	1360, 2727
BpuEI	CTTGAG	2 cut(s)	646, 1709
BpuMI	CCSGG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	2220
BsaBI	GATNNNNATC	1 cut(s)	1648
BsaHI	GRCGYC	3 cut(s)	23, 29, 1291
BsaI	GGTCTC	4 cut(s)	202, 1191, 1610, 1839
BsaJI	CCNNGG	2 cut(s)	156, 1038
BsaWI	WCCGGW	1 cut(s)	1830
Bsc4I	CCNNNNNNNGG	4 cut(s)	1513, 1860, 1941, 2585
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	3 cut(s)	741, 1179, 1518
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	1648
BseBI	CCWGG	5 cut(s)	157, 167, 1305, 2165, 2583
BseCI	ATCGAT	1 cut(s)	2220
BseDI	CCNNGG	2 cut(s)	156, 1038
BseGI	GGATG	7 cut(s)	175, 295, 414, 532, 1403, 1994, 2061
BseJI	GATNNNNATC	1 cut(s)	1648
BseLI	CCNNNNNNNGG	4 cut(s)	1513, 1860, 1941, 2585
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	9 cut(s)	275, 525, 735, 1548, 1667, 1875, 1890, 2100, 2372
BseNI	ACTGG	3 cut(s)	741, 1179, 1518
BseRI	GAGGAG	4 cut(s)	98, 1393, 2090, 2195
BseSI	GKGCMC	1 cut(s)	2747
BseYI	CCCAGC	2 cut(s)	8, 982
BsgI	GTGCAG	3 cut(s)	288, 1265, 1472
BshFI	GGCC	6 cut(s)	115, 246, 510, 585, 891, 2513
BshNI	GGYRCC	3 cut(s)	1894, 1982, 2244
BshVI	ATCGAT	1 cut(s)	2220
BsiHKAI	GWGCWC	3 cut(s)	257, 1477, 2528
BsiHKCI	CYCGRG	1 cut(s)	941
BsiSI	CCGG	3 cut(s)	17, 62, 1831
BslFI	GGGAC	3 cut(s)	25, 173, 556
BslI	CCNNNNNNNGG	4 cut(s)	1513, 1860, 1941, 2585
BsmAI	GTCTC	8 cut(s)	202, 1191, 1344, 1435, 1610, 1839, 1874, 2201
BsmFI	GGGAC	3 cut(s)	25, 173, 556
BsmI	GAATGC	4 cut(s)	325, 955, 1760, 2071
BsnI	GGCC	6 cut(s)	115, 246, 510, 585, 891, 2513
Bso31I	GGTCTC	4 cut(s)	202, 1191, 1610, 1839
BsoBI	CYCGRG	1 cut(s)	941
Bsp119I	TTCGAA	2 cut(s)	1360, 2727
Bsp1286I	GDGCHC	5 cut(s)	257, 983, 1477, 2528, 2747
Bsp1407I	TGTACA	1 cut(s)	2650
Bsp143I	GATC	8 cut(s)	145, 487, 665, 1382, 1399, 1635, 2356, 2416
BspACI	CCGC	7 cut(s)	116, 832, 1266, 2021, 2122, 2317, 2586
BspANI	GGCC	6 cut(s)	115, 246, 510, 585, 891, 2513
BspCNI	CTCAG	9 cut(s)	274, 526, 734, 1549, 1666, 1876, 1891, 2101, 2373
BspDI	ATCGAT	1 cut(s)	2220
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	6 cut(s)	511, 544, 739, 1896, 1984, 2246
BspMAI	CTGCAG	3 cut(s)	2074, 2461, 2607
BspMI	ACCTGC	3 cut(s)	220, 2464, 2716
BspOI	GCTAGC	1 cut(s)	2715
BspPI	GGATC	1 cut(s)	1394
BspQI	GCTCTTC	1 cut(s)	1173
BspT104I	TTCGAA	2 cut(s)	1360, 2727
BspT107I	GGYRCC	3 cut(s)	1894, 1982, 2244
BspTI	CTTAAG	3 cut(s)	446, 1121, 2489
BspTNI	GGTCTC	4 cut(s)	202, 1191, 1610, 1839
BsrBI	CCGCTC	1 cut(s)	2122
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	2650
BsrI	ACTGG	3 cut(s)	741, 1179, 1518
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	156, 1038
BssMI	GATC	8 cut(s)	145, 487, 665, 1382, 1399, 1635, 2356, 2416
BssNI	GRCGYC	3 cut(s)	23, 29, 1291
BssT1I	CCWWGG	1 cut(s)	1038
Bst2UI	CCWGG	5 cut(s)	157, 167, 1305, 2165, 2583
Bst4CI	ACNGT	8 cut(s)	103, 481, 856, 976, 1020, 1321, 1338, 2467
Bst6I	CTCTTC	3 cut(s)	1173, 1626, 2253
BstACI	GRCGYC	3 cut(s)	23, 29, 1291
BstAFI	CTTAAG	3 cut(s)	446, 1121, 2489
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstAUI	TGTACA	1 cut(s)	2650
BstBI	TTCGAA	2 cut(s)	1360, 2727
BstC8I	GCNNGC	7 cut(s)	135, 839, 1660, 1719, 2461, 2713, 2743
BstEII	GGTNACC	1 cut(s)	1045
BstF5I	GGATG	7 cut(s)	175, 295, 414, 532, 1403, 1994, 2061
BstHHI	GCGC	1 cut(s)	1120
BstKTI	GATC	8 cut(s)	148, 490, 668, 1385, 1402, 1638, 2359, 2419
BstMAI	GTCTC	8 cut(s)	202, 1191, 1344, 1435, 1610, 1839, 1874, 2201
BstMBI	GATC	8 cut(s)	145, 487, 665, 1382, 1399, 1635, 2356, 2416
BstMWI	GCNNNNNNNGC	8 cut(s)	252, 302, 507, 959, 1034, 1117, 1472, 2435
BstNI	CCWGG	5 cut(s)	157, 167, 1305, 2165, 2583
BstNSI	RCATGY	2 cut(s)	2644, 2651
BstPI	GGTNACC	1 cut(s)	1045
BstSCI	CCNGG	6 cut(s)	61, 155, 165, 1303, 2163, 2581
BstSFI	CTRYAG	6 cut(s)	1395, 1539, 1707, 2070, 2457, 2603
BstSLI	GKGCMC	1 cut(s)	2747
BstV2I	GAAGAC	2 cut(s)	927, 2765
BstX2I	RGATCY	1 cut(s)	1399
BstXI	CCANNNNNNTGG	1 cut(s)	2241
BstYI	RGATCY	1 cut(s)	1399
Bsu15I	ATCGAT	1 cut(s)	2220
BsuRI	GGCC	6 cut(s)	115, 246, 510, 585, 891, 2513
BsuTUI	ATCGAT	1 cut(s)	2220
BtgZI	GCGATG	1 cut(s)	1915
BtsCI	GGATG	7 cut(s)	175, 295, 414, 532, 1403, 1994, 2061
BtsI	GCAGTG	1 cut(s)	2399
BtsIMutI	CAGTG	6 cut(s)	99, 381, 729, 1016, 2399, 2463
BveI	ACCTGC	3 cut(s)	220, 2464, 2716
Cac8I	GCNNGC	7 cut(s)	135, 839, 1660, 1719, 2461, 2713, 2743
CaiI	CAGNNNCTG	1 cut(s)	2465
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	1120
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	4 cut(s)	245, 509, 543, 1268
ClaI	ATCGAT	1 cut(s)	2220
CseI	GACGC	2 cut(s)	31, 1280
Csp6I	GTAC	6 cut(s)	801, 972, 1484, 1809, 1983, 2651
CviQI	GTAC	6 cut(s)	801, 972, 1484, 1809, 1983, 2651
DpnI	GATC	8 cut(s)	147, 489, 667, 1384, 1401, 1637, 2358, 2418
DpnII	GATC	8 cut(s)	145, 487, 665, 1382, 1399, 1635, 2356, 2416
DraI	TTTAAA	1 cut(s)	2796
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	3 cut(s)	583, 889, 2511
Eam1104I	CTCTTC	3 cut(s)	1173, 1626, 2253
EarI	CTCTTC	3 cut(s)	1173, 1626, 2253
EciI	GGCGGA	1 cut(s)	2601
Ecl136II	GAGCTC	1 cut(s)	2526
Eco130I	CCWWGG	1 cut(s)	1038
Eco24I	GRGCYC	2 cut(s)	983, 2528
Eco31I	GGTCTC	4 cut(s)	202, 1191, 1610, 1839
Eco32I	GATATC	2 cut(s)	2575, 2784
Eco47I	GGWCC	2 cut(s)	543, 1268
Eco53kI	GAGCTC	1 cut(s)	2526
Eco57I	CTGAAG	4 cut(s)	1299, 1614, 1646, 1734
Eco88I	CYCGRG	1 cut(s)	941
Eco91I	GGTNACC	1 cut(s)	1045
EcoICRI	GAGCTC	1 cut(s)	2526
EcoO65I	GGTNACC	1 cut(s)	1045
EcoRII	CCWGG	5 cut(s)	155, 165, 1303, 2163, 2581
EcoRV	GATATC	2 cut(s)	2575, 2784
EcoT14I	CCWWGG	1 cut(s)	1038
EcoT38I	GRGCYC	2 cut(s)	983, 2528
ErhI	CCWWGG	1 cut(s)	1038
FaqI	GGGAC	3 cut(s)	25, 173, 556
FauI	CCCGC	1 cut(s)	2115
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	2356
FokI	GGATG	7 cut(s)	182, 302, 401, 539, 1390, 1981, 2068
FriOI	GRGCYC	2 cut(s)	983, 2528
FspBI	CTAG	8 cut(s)	348, 1032, 1133, 1737, 1920, 2430, 2444, 2712
GlaI	GCGC	1 cut(s)	1119
GsaI	CCCAGC	2 cut(s)	12, 986
GsuI	CTGGAG	1 cut(s)	2565
HaeIII	GGCC	6 cut(s)	115, 246, 510, 585, 891, 2513
HapII	CCGG	3 cut(s)	17, 62, 1831
HgaI	GACGC	2 cut(s)	31, 1280
HhaI	GCGC	1 cut(s)	1120
Hin1I	GRCGYC	3 cut(s)	23, 29, 1291
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HindIII	AAGCTT	1 cut(s)	1685
HpaII	CCGG	3 cut(s)	17, 62, 1831
Hpy166II	GTNNAC	6 cut(s)	757, 773, 1237, 2614, 2625, 2705
Hpy8I	GTNNAC	6 cut(s)	757, 773, 1237, 2614, 2625, 2705
Hpy99I	CGWCG	3 cut(s)	25, 31, 2675
HpyCH4III	ACNGT	8 cut(s)	103, 481, 856, 976, 1020, 1321, 1338, 2467
HpyCH4IV	ACGT	3 cut(s)	29, 251, 775
HpyF10VI	GCNNNNNNNGC	8 cut(s)	252, 302, 507, 959, 1034, 1117, 1472, 2435
HpySE526I	ACGT	3 cut(s)	29, 251, 775
Hsp92I	GRCGYC	3 cut(s)	23, 29, 1291
HspAI	GCGC	1 cut(s)	1118
KpnI	GGTACC	1 cut(s)	1986
Ksp22I	TGATCA	1 cut(s)	2356
Kzo9I	GATC	8 cut(s)	145, 487, 665, 1382, 1399, 1635, 2356, 2416
LguI	GCTCTTC	1 cut(s)	1173
LmnI	GCTCC	5 cut(s)	737, 1253, 1589, 2023, 2139
LweI	GCATC	4 cut(s)	520, 1831, 1900, 2544
MaeI	CTAG	8 cut(s)	348, 1032, 1133, 1737, 1920, 2430, 2444, 2712
MaeII	ACGT	3 cut(s)	29, 251, 775
MaeIII	GTNAC	5 cut(s)	97, 1045, 1387, 2104, 2447
MalI	GATC	8 cut(s)	147, 489, 667, 1384, 1401, 1637, 2358, 2418
MbiI	CCGCTC	1 cut(s)	2122
MboI	GATC	8 cut(s)	145, 487, 665, 1382, 1399, 1635, 2356, 2416
MflI	RGATCY	1 cut(s)	1399
MhlI	GDGCHC	5 cut(s)	257, 983, 1477, 2528, 2747
MlsI	TGGCCA	3 cut(s)	585, 891, 2513
MluNI	TGGCCA	3 cut(s)	585, 891, 2513
MmeI	TCCRAC	2 cut(s)	2379, 2665
Mox20I	TGGCCA	3 cut(s)	585, 891, 2513
MroXI	GAANNNNTTC	1 cut(s)	2229
MscI	TGGCCA	3 cut(s)	585, 891, 2513
MseI	TTAA	8 cut(s)	447, 989, 1122, 2034, 2114, 2129, 2490, 2795
MslI	CAYNNNNRTG	3 cut(s)	1412, 1934, 2239
Msp20I	TGGCCA	3 cut(s)	585, 891, 2513
MspA1I	CMGCKG	3 cut(s)	118, 1717, 2608
MspCI	CTTAAG	3 cut(s)	446, 1121, 2489
MspI	CCGG	3 cut(s)	17, 62, 1831
MspR9I	CCNGG	6 cut(s)	63, 157, 167, 1305, 2165, 2583
Mva1269I	GAATGC	4 cut(s)	325, 955, 1760, 2071
MvaI	CCWGG	5 cut(s)	157, 167, 1305, 2165, 2583
MwoI	GCNNNNNNNGC	8 cut(s)	252, 302, 507, 959, 1034, 1117, 1472, 2435
NciI	CCSGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	8 cut(s)	145, 487, 665, 1382, 1399, 1635, 2356, 2416
NheI	GCTAGC	1 cut(s)	2711
NlaIV	GGNNCC	6 cut(s)	511, 544, 739, 1896, 1984, 2246
NmuCI	GTSAC	3 cut(s)	97, 1045, 2447
NspI	RCATGY	2 cut(s)	2644, 2651
NspV	TTCGAA	2 cut(s)	1360, 2727
PagI	TCATGA	1 cut(s)	202
PciI	ACATGT	1 cut(s)	2647
PciSI	GCTCTTC	1 cut(s)	1173
PctI	GAATGC	4 cut(s)	325, 955, 1760, 2071
PdmI	GAANNNNTTC	1 cut(s)	2229
PflFI	GACNNNGTC	1 cut(s)	1765
PflMI	CCANNNNNTGG	1 cut(s)	1513
PfoI	TCCNGGA	1 cut(s)	1303
PscI	ACATGT	1 cut(s)	2647
Psp124BI	GAGCTC	1 cut(s)	2528
Psp6I	CCWGG	5 cut(s)	155, 165, 1303, 2163, 2581
PspEI	GGTNACC	1 cut(s)	1045
PspFI	CCCAGC	2 cut(s)	8, 982
PspGI	CCWGG	5 cut(s)	155, 165, 1303, 2163, 2581
PspN4I	GGNNCC	6 cut(s)	511, 544, 739, 1896, 1984, 2246
PspPI	GGNCC	4 cut(s)	245, 509, 543, 1268
PsrI	GAACNNNNNNTAC	2 cut(s)	2089, 2121
PstI	CTGCAG	3 cut(s)	2074, 2461, 2607
PstNI	CAGNNNCTG	1 cut(s)	2465
PsuI	RGATCY	1 cut(s)	1399
PsyI	GACNNNGTC	1 cut(s)	1765
PvuII	CAGCTG	2 cut(s)	1717, 2608
RsaI	GTAC	6 cut(s)	802, 973, 1485, 1810, 1984, 2652
RsaNI	GTAC	6 cut(s)	801, 972, 1484, 1809, 1983, 2651
RseI	CAYNNNNRTG	3 cut(s)	1412, 1934, 2239
SacI	GAGCTC	1 cut(s)	2528
SapI	GCTCTTC	1 cut(s)	1173
SaqAI	TTAA	8 cut(s)	447, 989, 1122, 2034, 2114, 2129, 2490, 2795
Sau3AI	GATC	8 cut(s)	145, 487, 665, 1382, 1399, 1635, 2356, 2416
Sau96I	GGNCC	4 cut(s)	245, 509, 543, 1268
SbfI	CCTGCAGG	1 cut(s)	2461
ScaI	AGTACT	1 cut(s)	1485
ScrFI	CCNGG	6 cut(s)	63, 157, 167, 1305, 2165, 2583
SdaI	CCTGCAGG	1 cut(s)	2461
SduI	GDGCHC	5 cut(s)	257, 983, 1477, 2528, 2747
SfaNI	GCATC	4 cut(s)	520, 1831, 1900, 2544
SfcI	CTRYAG	6 cut(s)	1395, 1539, 1707, 2070, 2457, 2603
SfuI	TTCGAA	2 cut(s)	1360, 2727
SgrAI	CRCCGGYG	1 cut(s)	16
SinI	GGWCC	2 cut(s)	543, 1268
SmiMI	CAYNNNNRTG	3 cut(s)	1412, 1934, 2239
SmlI	CTYRAG	5 cut(s)	446, 661, 1121, 1688, 2489
SmoI	CTYRAG	5 cut(s)	446, 661, 1121, 1688, 2489
SpeI	ACTAGT	3 cut(s)	347, 1031, 1736
Sse8387I	CCTGCAGG	1 cut(s)	2461
SsiI	CCGC	7 cut(s)	116, 832, 1266, 2021, 2122, 2317, 2586
SspI	AATATT	1 cut(s)	1666
SspMI	CTAG	8 cut(s)	348, 1032, 1133, 1737, 1920, 2430, 2444, 2712
SstI	GAGCTC	1 cut(s)	2528
StyD4I	CCNGG	6 cut(s)	61, 155, 165, 1303, 2163, 2581
StyI	CCWWGG	1 cut(s)	1038
TaaI	ACNGT	8 cut(s)	103, 481, 856, 976, 1020, 1321, 1338, 2467
TaiI	ACGT	3 cut(s)	32, 254, 778
TaqI	TCGA	9 cut(s)	106, 1360, 1471, 1510, 1642, 1859, 2220, 2727, 2786
TatI	WGTACW	4 cut(s)	971, 1483, 1808, 2650
TauI	GCSGC	1 cut(s)	118
Tru1I	TTAA	8 cut(s)	447, 989, 1122, 2034, 2114, 2129, 2490, 2795
Tru9I	TTAA	8 cut(s)	447, 989, 1122, 2034, 2114, 2129, 2490, 2795
TscAI	CASTG	6 cut(s)	106, 388, 729, 1023, 2399, 2470
TseFI	GTSAC	3 cut(s)	97, 1045, 2447
Tsp45I	GTSAC	3 cut(s)	97, 1045, 2447
TspDTI	ATGAA	9 cut(s)	288, 332, 430, 489, 579, 1329, 1434, 1989, 2238
TspGWI	ACGGA	1 cut(s)	1243
TspRI	CASTG	6 cut(s)	106, 388, 729, 1023, 2399, 2470
Tth111I	GACNNNGTC	1 cut(s)	1765
Van91I	CCANNNNNTGG	1 cut(s)	1513
Vha464I	CTTAAG	3 cut(s)	446, 1121, 2489
VpaK11BI	GGWCC	2 cut(s)	543, 1268
XapI	RAATTY	2 cut(s)	924, 2776
XceI	RCATGY	2 cut(s)	2644, 2651
XmnI	GAANNNNTTC	1 cut(s)	2229
XspI	CTAG	8 cut(s)	348, 1032, 1133, 1737, 1920, 2430, 2444, 2712
ZraI	GACGTC	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	1485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.