Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025188.1

Orthogroup ID

OG0005325

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1420

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 619 bp

atgatggctgggacaccggcgacgccgacgtctaaactccataggactacatgttccactccgggtggttcaagagttcgtgaggagaaaatcttggtcactgttcgattgaggccgctgaatcggagagagcaggcaatgtatgatcttattgcctgggactgcctggatgagaacactattgttttcaagaatccaaatcatgagagacctgctaatccatacatatttgataaggtgtttggcccaacgtgctcaactcagaaggtctatgaagatggggctaaggatgttgctttatctgcacttacaggaatgaatgcaacaatttttgcatatgggcagactagtagtggaaagacattcaccatgagaggaatcactgaaaatgctgtcaaggacatttttgaacacatcaagaaaacaccagagaggaagttcattcttaagttttctgcattggagatttacaatgaaactgttgttgaccttctgaaacgcaaatctggccccgttcggcttttggatgatgctgagaaagggaccaatgtggataaattacatgaagaaattattgaagatggccaacatttgaaacatttgattggaatatgtgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

206

Amino Acids

23.17

Weight (kDa)

7.69

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43210 AT3G43210 AT3G43210 AT3G43210 AT3G43210
fragaria_vesca	FvH4_1g09380 FvH4_1g09380
malus_domestica	MD02G1101100.v1.1 MD02G1101900.v1.1 MD02G1106600.v1.1 MD15G1223600.v1.1
prunus_persica	Prupe.7G192200_v2.0.a1 Prupe.7G192200_v2.0.a1
pyrus_communis	pycom06g19620 pycom15g19780
rosa_chinensis	RchiOBHm_Chr2g0095931
rosa_laevigata	RLG00000016607
rosa_multiflora	Rmu_co8396839.1_g000001 Rmu_sc0022801.1_g000001 Rmu_sc0025188.1_g000001 Rmu_sc0043120.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145950 Rroxscaffold_2G00145960
rosa_rugosa	Rorug02G0054000
rosa_samantha	Rh2AG103100 Rh2BG104500 Rh2CG107000 Rh2DG104800
rosa_wichuraiana	Rw2G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AatII	GACGTC	1 cut(s)	32
Acc36I	ACCTGC	1 cut(s)	220
AciI	CCGC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	583
AcyI	GRCGYC	2 cut(s)	23, 29
AflII	CTTAAG	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	5 cut(s)	72, 190, 410, 578, 595
AhlI	ACTAGT	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	155, 165
AloI	GAACNNNNNNTCC	2 cut(s)	37, 69
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	202
AoxI	GGCC	4 cut(s)	113, 244, 508, 583
AspS9I	GGNCC	3 cut(s)	245, 509, 543
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	543
BalI	TGGCCA	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	257
BccI	CCATC	2 cut(s)	272, 575
BciT130I	CCWGG	2 cut(s)	157, 167
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	202
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	1 cut(s)	348
BfrI	CTTAAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	3 cut(s)	63, 157, 167
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	3 cut(s)	245, 509, 543
BmiI	GGNNCC	2 cut(s)	511, 544
BmrFI	CCNGG	3 cut(s)	63, 157, 167
BmsI	GCATC	1 cut(s)	520
Bpu10I	CCTNAGC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	23, 29
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	157, 167
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	3 cut(s)	175, 295, 532
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	275, 525
BseRI	GAGGAG	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	115, 246, 510, 585
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	17, 62
BslFI	GGGAC	3 cut(s)	25, 173, 556
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	3 cut(s)	25, 173, 556
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	4 cut(s)	115, 246, 510, 585
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	4 cut(s)	115, 246, 510, 585
BspCNI	CTCAG	2 cut(s)	274, 526
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	511, 544
BspMI	ACCTGC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	2 cut(s)	23, 29
Bst2UI	CCWGG	2 cut(s)	157, 167
Bst4CI	ACNGT	2 cut(s)	103, 481
BstACI	GRCGYC	2 cut(s)	23, 29
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	261, 285, 534
BstF5I	GGATG	3 cut(s)	175, 295, 532
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 302, 507
BstNI	CCWGG	2 cut(s)	157, 167
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	61, 155, 165
BsuRI	GGCC	4 cut(s)	115, 246, 510, 585
BtsCI	GGATG	3 cut(s)	175, 295, 532
BtsIMutI	CAGTG	2 cut(s)	99, 381
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	245, 509, 543
CseI	GACGC	1 cut(s)	31
CviAII	CATG	4 cut(s)	51, 203, 370, 563
CviJI	RGCY	7 cut(s)	8, 115, 246, 284, 510, 520, 585
CviKI_1	RGCY	7 cut(s)	8, 115, 246, 284, 510, 520, 585
DdeI	CTNAG	3 cut(s)	261, 285, 534
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	583
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	155, 165
FaeI	CATG	4 cut(s)	54, 206, 373, 566
FaqI	GGGAC	3 cut(s)	25, 173, 556
FatI	CATG	4 cut(s)	50, 202, 369, 562
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	3 cut(s)	182, 302, 539
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	115, 246, 510, 585
HapII	CCGG	2 cut(s)	17, 62
HgaI	GACGC	1 cut(s)	31
Hin1I	GRCGYC	2 cut(s)	23, 29
Hin1II	CATG	4 cut(s)	54, 206, 373, 566
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	3 cut(s)	121, 193, 378
HpaII	CCGG	2 cut(s)	17, 62
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	3 cut(s)	126, 264, 495
Hpy188III	TCNNGA	5 cut(s)	72, 80, 190, 203, 418
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	2 cut(s)	25, 31
HpyAV	CCTTC	2 cut(s)	259, 500
HpyCH4III	ACNGT	2 cut(s)	103, 481
HpyCH4IV	ACGT	2 cut(s)	29, 251
HpyCH4V	TGCA	4 cut(s)	305, 323, 335, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 302, 507
HpyF3I	CTNAG	3 cut(s)	261, 285, 534
HpySE526I	ACGT	2 cut(s)	29, 251
Hsp92I	GRCGYC	2 cut(s)	23, 29
Hsp92II	CATG	4 cut(s)	54, 206, 373, 566
Kzo9I	GATC	1 cut(s)	145
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	2 cut(s)	29, 251
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	287, 578, 590
MhlI	GDGCHC	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	585
MluCI	AATT	3 cut(s)	327, 557, 570
MluNI	TGGCCA	1 cut(s)	585
MnlI	CCTC	4 cut(s)	76, 105, 368, 426
Mox20I	TGGCCA	1 cut(s)	585
MscI	TGGCCA	1 cut(s)	585
MseI	TTAA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	118
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	2 cut(s)	17, 62
MspR9I	CCNGG	3 cut(s)	63, 157, 167
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	2 cut(s)	157, 167
MwoI	GCNNNNNNNGC	3 cut(s)	252, 302, 507
NciI	CCSGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	54, 206, 373, 566
NlaIV	GGNNCC	2 cut(s)	511, 544
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	54
PagI	TCATGA	1 cut(s)	202
PciI	ACATGT	1 cut(s)	50
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	121, 193, 378
PkrI	GCNGC	1 cut(s)	117
PscI	ACATGT	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	155, 165
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	155, 165
PspN4I	GGNNCC	2 cut(s)	511, 544
PspPI	GGNCC	3 cut(s)	245, 509, 543
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	3 cut(s)	245, 509, 543
ScrFI	CCNGG	3 cut(s)	63, 157, 167
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	6 cut(s)	32, 214, 240, 254, 270, 492
SfaNI	GCATC	1 cut(s)	520
SgrAI	CRCCGGYG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SpeI	ACTAGT	1 cut(s)	347
Sse9I	AATT	3 cut(s)	327, 557, 570
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	61, 155, 165
TaaI	ACNGT	2 cut(s)	103, 481
TaiI	ACGT	2 cut(s)	32, 254
TaqI	TCGA	1 cut(s)	106
TasI	AATT	3 cut(s)	327, 557, 570
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	3 cut(s)	121, 193, 378
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	106, 388
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	5 cut(s)	288, 332, 430, 489, 579
TspRI	CASTG	2 cut(s)	106, 388
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	543
XceI	RCATGY	1 cut(s)	54
XspI	CTAG	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.