Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005325

Physical Location & Seq

Genomic Coordinates Reverse (-)

8623365 .. 8624824

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1106600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCCGGGGACACCAGCAACACCTTCGGCTAAGCTGCAAAGGACTCCGTGTTCCGCTCCGGGTGGTTCAAAAGTCAGTGAGGAGAAAATTTTGGTTACTGTTCGTTTGAGGCCGCTGAACAGGCGAGAGCAGGTAATGTATGATGTTATAGCTTGGGACTGCTTGGATGAGCACACTATAGTTTTCAAAGAATCCGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

68

Amino Acids

7.47

Weight (kDa)

6.55

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43210 AT3G43210 AT3G43210 AT3G43210 AT3G43210
fragaria_vesca	FvH4_1g09380 FvH4_1g09380
malus_domestica	MD02G1101100.v1.1 MD02G1101900.v1.1 MD02G1106600.v1.1 MD15G1223600.v1.1
prunus_persica	Prupe.7G192200_v2.0.a1 Prupe.7G192200_v2.0.a1
pyrus_communis	pycom06g19620 pycom15g19780
rosa_chinensis	RchiOBHm_Chr2g0095931
rosa_laevigata	RLG00000016607
rosa_multiflora	Rmu_co8396839.1_g000001 Rmu_sc0022801.1_g000001 Rmu_sc0025188.1_g000001 Rmu_sc0043120.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145950 Rroxscaffold_2G00145960
rosa_rugosa	Rorug02G0054000
rosa_samantha	Rh2AG103100 Rh2BG104500 Rh2CG107000 Rh2DG104800
rosa_wichuraiana	Rw2G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	2 cut(s)	54, 113
AcsI	RAATTY	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	69, 187
AloI	GAACNNNNNNTCC	2 cut(s)	34, 66
AluBI	AGCT	2 cut(s)	34, 152
AluI	AGCT	2 cut(s)	34, 152
Alw21I	GWGCWC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	87
AsuC2I	CCSGG	2 cut(s)	6, 60
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcnI	CCSGG	2 cut(s)	6, 60
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	35, 113
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	2 cut(s)	36, 114
Bme1390I	CCNGG	2 cut(s)	6, 60
BmrFI	CCNGG	2 cut(s)	6, 60
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	6, 60
BsaJI	CCNNGG	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	5, 59
BslFI	GGGAC	2 cut(s)	22, 170
BsmFI	GGGAC	2 cut(s)	22, 170
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	54, 113
BspANI	GGCC	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	200
BspMI	ACCTGC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	4, 58
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	200
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	4 cut(s)	29, 34, 112, 152
CviKI_1	RGCY	4 cut(s)	29, 34, 112, 152
DdeI	CTNAG	1 cut(s)	30
FaeI	CATG	1 cut(s)	204
FaiI	YATR	4 cut(s)	141, 149, 179, 202
FaqI	GGGAC	2 cut(s)	22, 170
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	35, 113
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	35, 113
GluI	GCNGC	2 cut(s)	35, 113
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	2 cut(s)	5, 59
Hin1II	CATG	1 cut(s)	204
HinfI	GANTC	3 cut(s)	43, 191, 197
HpaII	CCGG	2 cut(s)	5, 59
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	5 cut(s)	18, 27, 72, 106, 116
Lsp1109I	GCAGC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	94
MbiI	CCGCTC	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	73, 102
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	2 cut(s)	5, 59
MspR9I	CCNGG	2 cut(s)	6, 60
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	2 cut(s)	6, 60
NlaIII	CATG	1 cut(s)	204
PagI	TCATGA	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	191, 197
PkrI	GCNGC	2 cut(s)	36, 114
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
SatI	GCNGC	2 cut(s)	35, 113
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	6, 60
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	25, 36, 135, 154
SfcI	CTRYAG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	2 cut(s)	54, 113
StyD4I	CCNGG	2 cut(s)	4, 58
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	1 cut(s)	87
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	191, 197
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.