Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005325

Physical Location & Seq

Genomic Coordinates Forward (+)

22971395 .. 22972369

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAGAAAATGCAGAAGATGTTCCAAAATGCAGCAGAAGAGAACGTAAGAAACATTAGAACATATGTAACGGAACTGAAAGAGCGGGTGGCCAAACTGCAGTACCAAAAGCAGTTACTAGTTTGCCAGGTTCTGGAGCTGGAAGCAAATGAAGCTGCCGGGTACAATTTAGAGAATGACGAGAACATATGTGAGACTGAGGAGCACCAAGTCTCGTGGCAAATAACTTTCAAGGAACAAAGACAGCAGATCGATCGCATTGAGTTATGGGATTTGTGCTTTGTCTCCATCATTCACAGGACACAATTTTATTTGTTGTTTAAGGGTGACCCCGATGATCAAATCTACGTGGAAGTGGAGCTGAGGCGGTTGACATGGCTGCAACAGCATCTTGCGGAACTTGGGAATGCTAGCCCTGCTCAAGTGGGAGACGAACCCACAGTCTCTTTGCCATCAAGTATGAGAGCGCTAAAGCGCGAAAGGGAGTTCCTTGCGAAGAGGTTGTCTTCACGCTTGACGGCAGAGGAGAGAGATGCATTGTACATGAAATGGGACGTCCCGCTGGAAGGAAAGCAGAGGAAGCTGCATTTTGTGAACAAGCTTTGGCAAGATCCCCATGATCCCAGGCACATACAGGAGAGTGCTGAAATAGTTGCAAAGCTTGTTGGCTTCTGTGAAAGCGGAAACTTGTCGAGAGAGATGTTTGAGCTCAATTTTGTGCTCCCATCTGATAGGAGGCCATGGATGATGGGCTGGAACCAGATTTCCAATCTTCTCAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0007349 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048229 GO:0048285 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140014 GO:1902410 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

262

Amino Acids

30.89

Weight (kDa)

5.65

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3490	PF11995	77 - 241	9.4e-68	Domain of unknown function (DUF3490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43210 AT3G43210 AT3G43210 AT3G43210 AT3G43210
fragaria_vesca	FvH4_1g09380 FvH4_1g09380
malus_domestica	MD02G1101100.v1.1 MD02G1101900.v1.1 MD02G1106600.v1.1 MD15G1223600.v1.1
prunus_persica	Prupe.7G192200_v2.0.a1 Prupe.7G192200_v2.0.a1
pyrus_communis	pycom06g19620 pycom15g19780
rosa_chinensis	RchiOBHm_Chr2g0095931
rosa_laevigata	RLG00000016607
rosa_multiflora	Rmu_co8396839.1_g000001 Rmu_sc0022801.1_g000001 Rmu_sc0025188.1_g000001 Rmu_sc0043120.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145950 Rroxscaffold_2G00145960
rosa_rugosa	Rorug02G0054000
rosa_samantha	Rh2AG103100 Rh2BG104500 Rh2CG107000 Rh2DG104800
rosa_wichuraiana	Rw2G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	558
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	85
AccII	CGCG	1 cut(s)	477
AciI	CCGC	5 cut(s)	85, 367, 395, 560, 681
AclWI	GGATC	2 cut(s)	605, 614
AcoI	YGGCCR	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	555
AfaI	GTAC	3 cut(s)	104, 164, 542
AfeI	AGCGCT	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	133, 566
AgsI	TTSAA	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	126, 623
AloI	GAACNNNNNNTCC	2 cut(s)	749, 781
AluBI	AGCT	7 cut(s)	139, 155, 361, 583, 601, 661, 709
AluI	AGCT	7 cut(s)	139, 155, 361, 583, 601, 661, 709
Alw21I	GWGCWC	3 cut(s)	207, 711, 723
Alw26I	GTCTC	5 cut(s)	188, 217, 289, 423, 448
AlwI	GGATC	2 cut(s)	605, 614
AlwNI	CAGNNNCTG	1 cut(s)	133
Aor51HI	AGCGCT	1 cut(s)	468
AoxI	GGCC	2 cut(s)	90, 737
ApeKI	GCWGC	4 cut(s)	32, 155, 379, 583
ArsI	GACNNNNNNTTYG	4 cut(s)	426, 458, 488, 520
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	469, 477
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	338
AsuNHI	GCTAGC	1 cut(s)	410
BaeI	ACNNNNGTAYC	2 cut(s)	86, 119
BalI	TGGCCA	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	3 cut(s)	207, 711, 723
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	4 cut(s)	44, 142, 366, 570
BccI	CCATC	4 cut(s)	296, 460, 733, 742
BceAI	ACGGC	1 cut(s)	534
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	128, 625
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	5 cut(s)	188, 217, 289, 423, 448
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	2 cut(s)	119, 411
BfmI	CTRYAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	470
BisI	GCNGC	4 cut(s)	33, 156, 380, 584
BlsI	GCNGC	4 cut(s)	34, 157, 381, 585
Bme1390I	CCNGG	3 cut(s)	128, 160, 625
BmiI	GGNNCC	1 cut(s)	758
BmrFI	CCNGG	3 cut(s)	128, 160, 625
BmsI	GCATC	2 cut(s)	397, 523
BmtI	GCTAGC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	160
Bsa29I	ATCGAT	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	623, 740
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 566
BseBI	CCWGG	2 cut(s)	128, 625
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	623, 740
BseGI	GGATG	1 cut(s)	750
BseLI	CCNNNNNNNGG	2 cut(s)	133, 566
BseMII	CTCAG	2 cut(s)	189, 353
BseRI	GAGGAG	2 cut(s)	215, 539
BseXI	GCAGC	4 cut(s)	44, 142, 366, 570
Bsh1236I	CGCG	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	92, 739
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	3 cut(s)	207, 711, 723
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	2 cut(s)	542, 566
BslI	CCNNNNNNNGG	2 cut(s)	133, 566
BsmAI	GTCTC	5 cut(s)	188, 217, 289, 423, 448
BsmBI	CGTCTC	1 cut(s)	423
BsmFI	GGGAC	2 cut(s)	542, 566
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	92, 739
Bsp1286I	GDGCHC	3 cut(s)	207, 711, 723
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	5 cut(s)	249, 253, 337, 610, 619
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	5 cut(s)	85, 367, 395, 560, 681
BspANI	GGCC	2 cut(s)	92, 739
BspCNI	CTCAG	2 cut(s)	190, 354
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	758
BspMAI	CTGCAG	1 cut(s)	102
BspOI	GCTAGC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	605, 614
BsrBI	CCGCTC	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	623, 740
BssMI	GATC	5 cut(s)	249, 253, 337, 610, 619
BssNI	GRCGYC	1 cut(s)	555
BssSI	CACGAG	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	740
Bst2BI	CACGAG	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	128, 625
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	2 cut(s)	33, 491
BstACI	GRCGYC	1 cut(s)	555
BstAUI	TGTACA	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	198, 362
BstDSI	CCRYGG	1 cut(s)	740
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	750
BstFNI	CGCG	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	469, 477
BstKTI	GATC	5 cut(s)	252, 256, 340, 613, 622
BstMAI	GTCTC	5 cut(s)	188, 217, 289, 423, 448
BstMBI	GATC	5 cut(s)	249, 253, 337, 610, 619
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 385, 416, 580
BstNI	CCWGG	2 cut(s)	128, 625
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	126, 158, 623
BstSFI	CTRYAG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	44, 142, 366, 570
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	92, 739
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	740
BtsCI	GGATG	1 cut(s)	750
Cac8I	GCNNGC	1 cut(s)	412
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	2 cut(s)	469, 477
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	103, 163, 541
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	4 cut(s)	375, 544, 617, 741
CviQI	GTAC	3 cut(s)	103, 163, 541
DdeI	CTNAG	2 cut(s)	198, 362
DpnI	GATC	5 cut(s)	251, 255, 339, 612, 621
DpnII	GATC	5 cut(s)	249, 253, 337, 610, 619
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	33, 491
EarI	CTCTTC	2 cut(s)	33, 491
Ecl136II	GAGCTC	1 cut(s)	709
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	711
Eco47III	AGCGCT	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	709
Eco91I	GGTNACC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	709
EcoO65I	GGTNACC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	126, 623
EcoT14I	CCWWGG	1 cut(s)	740
EcoT22I	ATGCAT	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	740
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	4 cut(s)	378, 547, 620, 744
FaqI	GGGAC	2 cut(s)	542, 566
FatI	CATG	4 cut(s)	374, 543, 616, 740
FauI	CCCGC	2 cut(s)	78, 567
FauNDI	CATATG	2 cut(s)	64, 188
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	33, 156, 380, 584
FokI	GGATG	1 cut(s)	757
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	4 cut(s)	33, 156, 380, 584
FspBI	CTAG	2 cut(s)	119, 411
GlaI	GCGC	2 cut(s)	468, 476
GluI	GCNGC	4 cut(s)	33, 156, 380, 584
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	92, 739
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	2 cut(s)	469, 477
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	4 cut(s)	378, 547, 620, 744
Hin6I	GCGC	2 cut(s)	467, 475
HinP1I	GCGC	2 cut(s)	467, 475
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	2 cut(s)	599, 659
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	2 cut(s)	372, 595
Hpy188I	TCNGA	1 cut(s)	730
Hpy188III	TCNNGA	2 cut(s)	134, 693
Hpy8I	GTNNAC	2 cut(s)	372, 595
HpyAV	CCTTC	1 cut(s)	560
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	3 cut(s)	45, 348, 555
HpyCH4V	TGCA	7 cut(s)	13, 32, 100, 382, 536, 586, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 385, 416, 580
HpyF3I	CTNAG	2 cut(s)	198, 362
HpySE526I	ACGT	3 cut(s)	45, 348, 555
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	4 cut(s)	378, 547, 620, 744
HspAI	GCGC	2 cut(s)	467, 475
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	249, 253, 337, 610, 619
LmnI	GCTCC	4 cut(s)	136, 202, 358, 726
Lsp1109I	GCAGC	4 cut(s)	44, 142, 366, 570
LweI	GCATC	2 cut(s)	397, 523
MaeI	CTAG	2 cut(s)	119, 411
MaeII	ACGT	3 cut(s)	45, 348, 555
MaeIII	GTNAC	3 cut(s)	67, 114, 326
MalI	GATC	5 cut(s)	251, 255, 339, 612, 621
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	5 cut(s)	249, 253, 337, 610, 619
MboII	GAAGA	6 cut(s)	16, 28, 50, 498, 508, 764
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	3 cut(s)	207, 711, 723
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	4 cut(s)	166, 305, 712, 778
MluNI	TGGCCA	1 cut(s)	92
MnlI	CCTC	6 cut(s)	193, 357, 492, 517, 570, 729
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	3 cut(s)	128, 160, 625
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	2 cut(s)	128, 625
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	152, 385, 416, 580
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	740
NdeI	CATATG	2 cut(s)	64, 188
NdeII	GATC	5 cut(s)	249, 253, 337, 610, 619
NheI	GCTAGC	1 cut(s)	410
NlaIII	CATG	4 cut(s)	378, 547, 620, 744
NlaIV	GGNNCC	1 cut(s)	758
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	538
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	34, 157, 381, 585
Ple19I	CGATCG	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	711
Psp6I	CCWGG	2 cut(s)	126, 623
PspEI	GGTNACC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	126, 623
PspN4I	GGNNCC	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	610
PvuI	CGATCG	1 cut(s)	256
RsaI	GTAC	3 cut(s)	104, 164, 542
RsaNI	GTAC	3 cut(s)	103, 163, 541
SacI	GAGCTC	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	4 cut(s)	33, 156, 380, 584
Sau3AI	GATC	5 cut(s)	249, 253, 337, 610, 619
ScrFI	CCNGG	3 cut(s)	128, 160, 625
SduI	GDGCHC	3 cut(s)	207, 711, 723
SfaNI	GCATC	2 cut(s)	397, 523
SfcI	CTRYAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	4 cut(s)	166, 305, 712, 778
SsiI	CCGC	5 cut(s)	85, 367, 395, 560, 681
SspMI	CTAG	2 cut(s)	119, 411
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	3 cut(s)	126, 158, 623
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	3 cut(s)	48, 351, 558
TaqI	TCGA	2 cut(s)	252, 692
TasI	AATT	4 cut(s)	166, 305, 712, 778
TatI	WGTACW	1 cut(s)	540
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	4 cut(s)	32, 155, 379, 583
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	17, 165, 560
TspGWI	ACGGA	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	119, 411
ZraI	GACGTC	1 cut(s)	556
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.