Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014813

Physical Location & Seq

Genomic Coordinates Forward (+)

29575181 .. 29577769

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1245400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCTAACCATATTCCTCTCTAGGTACCCAATGCTGGAATCAATTCAAAAGTATCTATGGCCAAGATTATGCAAACTTGATCAACGAAAACTTTATGAGCTGCACTACCAGATGATTACATTTGGAAAGTGCAAGGCTTGCCCTGCCAGGTCCAGAAGAGAAGAGCATTGTGAGTTCAAGTGTTCCAATTGCAACCGAAATAAACCCTACATAGCTGTCACTCCCATGTCACTGCCTCCACCCGAAATCAACTCACTCCAGATAGCAGGTGTTGAGATTAACAAATGTGAACCAATCATTGAAGAACCAGCATCCCCAGAACAAGAGTTCACTGAGCTAACACTAAGTGACATAGAGGACTTGTTCTACGAGGATCCAGACGAGATTCCTACCATCAAACTCAACATGGAACAGTTCACATCGACATTACAAAACTATATGCAAGATAAGATGGAGCTTCAAGAAGATGACATGTCCAAGGCTTTAGTTGCCTTGACTTCGGAAGCTGCTTCTATCCCTACACCCAAGCTAAAGAATGTCAGTCGACTACGAACAGAGCACCAAGTATGGACAGACGGGAACCAGATGATCCAAGCCCTTACCTTCTTGCTATATGGACACCAGATACCTTGTAGAACAGCAATGAGAGGGAGCTTTCCACTCAACGGGACATATTTTCAAGTTAATGAGATGTTCGCAGATCATGAGTCTAGTCACAACCCAATAGATGTTCCAAGGGGGTGGATATGGAATTTGCCAAGACGGACAGTATACTTTGGAACTTCTGTATCGACAATATTCAGAGGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

271

Amino Acids

31.36

Weight (kDa)

5.76

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_DME	PF15628	209 - 269	2.3e-31	RRM in Demeter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014813)

Species	Orthologous Gene IDs
malus_domestica	MD02G1245400.v1.1
rosa_laevigata	RLG00000014016 RLG00000019259
rosa_multiflora	Rmu_co8185588.1_g000001 Rmu_co8508999.1_g000001 Rmu_sc0001630.1_g000014 Rmu_sc0010408.1_g000007 Rmu_ssc0000337.1_g000003 Rmu_ssc0000388.1_g000059
rosa_rugosa	Rorug05G0177000 Rorug05G0286700 Rorug05G0373900 Rorug06G0018300
rosa_samantha	Rh4DG130200 Rh5AG315000 Rh6AG152900 Rh6CG148900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
Acc65I	GGTACC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	24
AccI	GTMKAC	2 cut(s)	544, 771
AclWI	GGATC	3 cut(s)	368, 381, 583
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	34, 665
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	5 cut(s)	47, 178, 302, 461, 680
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	7 cut(s)	100, 215, 337, 457, 506, 529, 654
AluI	AGCT	7 cut(s)	100, 215, 337, 457, 506, 529, 654
Alw21I	GWGCWC	1 cut(s)	561
AlwI	GGATC	3 cut(s)	368, 381, 583
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	100, 506
ApoI	RAATTY	1 cut(s)	751
Asp700I	GAANNNNTTC	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	150
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BalI	TGGCCA	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	87, 493
BccI	CCATC	2 cut(s)	401, 445
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	79
BfaI	CTAG	2 cut(s)	21, 711
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	101, 507
BlsI	GCNGC	2 cut(s)	102, 508
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	26, 375, 581
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	477, 734
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 665
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	477, 734
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	34, 665
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	87, 493
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	2 cut(s)	34, 665
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	79, 373, 588, 700
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	3 cut(s)	26, 375, 581
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	368, 381, 583
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	648
BssECI	CCNNGG	2 cut(s)	477, 734
BssMI	GATC	4 cut(s)	79, 373, 588, 700
BssNAI	GTATAC	1 cut(s)	772
BssT1I	CCWWGG	2 cut(s)	477, 734
Bst1107I	GTATAC	1 cut(s)	772
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	414, 769
Bst6I	CTCTTC	2 cut(s)	151, 156
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	333, 344
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	4 cut(s)	82, 376, 591, 703
BstMBI	GATC	4 cut(s)	79, 373, 588, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 143, 488
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	87, 493
BstX2I	RGATCY	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	373
BstZ17I	GTATAC	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	230, 330
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	139
CciI	TCATGA	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	4 cut(s)	226, 406, 472, 704
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	333, 344
DpnI	GATC	4 cut(s)	81, 375, 590, 702
DpnII	GATC	4 cut(s)	79, 373, 588, 700
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	2 cut(s)	151, 156
EarI	CTCTTC	2 cut(s)	151, 156
Eco130I	CCWWGG	2 cut(s)	477, 734
Eco47I	GGWCC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	477, 734
ErhI	CCWWGG	2 cut(s)	477, 734
FaeI	CATG	4 cut(s)	229, 409, 475, 707
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	4 cut(s)	225, 405, 471, 703
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	2 cut(s)	544, 771
Fnu4HI	GCNGC	2 cut(s)	101, 507
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	101, 507
FspBI	CTAG	2 cut(s)	21, 711
GluI	GCNGC	2 cut(s)	101, 507
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	229, 409, 475, 707
HincII	GTYRAC	1 cut(s)	545
HindII	GTYRAC	1 cut(s)	545
HinfI	GANTC	3 cut(s)	38, 385, 707
Hpy166II	GTNNAC	5 cut(s)	290, 330, 417, 545, 772
Hpy188I	TCNGA	2 cut(s)	502, 803
Hpy188III	TCNNGA	5 cut(s)	153, 259, 377, 461, 704
Hpy8I	GTNNAC	5 cut(s)	290, 330, 417, 545, 772
HpyAV	CCTTC	1 cut(s)	613
HpyCH4III	ACNGT	2 cut(s)	414, 769
HpyCH4V	TGCA	5 cut(s)	72, 103, 132, 192, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 143, 488
HpyF3I	CTNAG	2 cut(s)	333, 344
Hsp92II	CATG	4 cut(s)	229, 409, 475, 707
KpnI	GGTACC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 373, 588, 700
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	2 cut(s)	454, 651
Lsp1109I	GCAGC	2 cut(s)	87, 493
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	2 cut(s)	21, 711
MaeIII	GTNAC	4 cut(s)	217, 228, 347, 713
MalI	GATC	4 cut(s)	81, 375, 590, 702
MboI	GATC	4 cut(s)	79, 373, 588, 700
MboII	GAAGA	4 cut(s)	168, 173, 314, 476
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	3 cut(s)	42, 187, 751
MluNI	TGGCCA	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	716
MnlI	CCTC	6 cut(s)	26, 246, 349, 364, 641, 797
Mox20I	TGGCCA	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	61
MseI	TTAA	2 cut(s)	279, 684
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	138, 143, 488
NdeII	GATC	4 cut(s)	79, 373, 588, 700
NlaIII	CATG	4 cut(s)	229, 409, 475, 707
NlaIV	GGNNCC	3 cut(s)	26, 375, 581
NmuCI	GTSAC	4 cut(s)	217, 228, 347, 713
NspI	RCATGY	1 cut(s)	475
PagI	TCATGA	1 cut(s)	703
PaqCI	CACCTGC	1 cut(s)	257
PciI	ACATGT	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	38, 385
PkrI	GCNGC	2 cut(s)	102, 508
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PscI	ACATGT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	3 cut(s)	26, 375, 581
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	224
SalI	GTCGAC	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	279, 684
SatI	GCNGC	2 cut(s)	101, 507
Sau3AI	GATC	4 cut(s)	79, 373, 588, 700
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	320
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	42, 187, 751
SspI	AATATT	1 cut(s)	798
SspMI	CTAG	2 cut(s)	21, 711
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	477, 734
TaaI	ACNGT	2 cut(s)	414, 769
TaqI	TCGA	3 cut(s)	422, 544, 791
TasI	AATT	3 cut(s)	42, 187, 751
TfiI	GAWTC	2 cut(s)	38, 385
Tru1I	TTAA	2 cut(s)	279, 684
Tru9I	TTAA	2 cut(s)	279, 684
TscAI	CASTG	2 cut(s)	237, 337
TseFI	GTSAC	4 cut(s)	217, 228, 347, 713
TseI	GCWGC	2 cut(s)	100, 506
Tsp45I	GTSAC	4 cut(s)	217, 228, 347, 713
TspGWI	ACGGA	1 cut(s)	778
TspRI	CASTG	2 cut(s)	237, 337
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	751
XceI	RCATGY	1 cut(s)	475
XmiI	GTMKAC	2 cut(s)	544, 771
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	2 cut(s)	21, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.