Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014813

Physical Location & Seq

Genomic Coordinates Reverse (-)

50368622 .. 50373961

Gene Structure 5340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0373900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGACGACGACGACTACGACGGCGGCGGCGGCGTTCGGAGCTGCGACGACGGCGGTGCTCCGGGAGCCCAAGGTGGAGATTGGAAGGTACCAGGGGCTGAGGTCAGCAAACTCGCTCGCTCTCACCGCCGGAGGAAGACACGTCACTCTCTTCAACGCTTCGTCTCGGAGCTCCTCTCTCATTCGAGCCGTCTCTACGCCCGCAAAGCCTGAGACTGCGACAAAGCGTAGCAAGGTTGAAATATTCAAAGAACAGAGCAACTTCATTAGATACCCGCTTAATGAAGAGATTTTGACAGATGCCCCCAATATAAACGAAGCTGCTACCCAACTCATCAAGTTTCATGGGAGCTACCAACAGTACAACCGAGATGAACGTGGTGGAAGGTCTTACTCGTTTATGCTTCGTACCAAGAATCCTTGTGGGAAAGTGTCAAACCAACTATACTTGACCATGGATGATCTTGCCGATCAGTTTGGAATTGGGACCCTCCGTTTGACCACCAGACAAACATTTCAGCTCCATGGTGTTCTGAAGAAGGACCTTAAGACAGTAATGGGTAGCATCATTAGAAGCATGGGTTCAACTCTTGGTGCCTGTGGTGATCTTAATAGGAACGTCCTTGCTCCTGCTGCTCCACTACTAAGAAAAGATTACCTTTTCGCACAAAAGACAGCAGAGAACATTGCGGCCCTGCTGACTCCTCAGTCTGGTTTTTACTATGATGTATGGGTGGATGGAGAGCAGTTCCTGACAGCAGAACCTCCTGAAGTAACCAAGGCCAGAAATGATAACTCTAATGGAAAAACCTTCACTGATTCCCCCGAGCCCATCTATGGAACTCAGTTCTTGCCCAGGAAGTTCAAAATTGCAGTCACTGTGCCAACAGATAACTCGGTGGATATTCTGACAAATGATATTGGTGTTGTGGTTGTTACTGATGATAATGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGTATGGGAAGGACACATAGGTTGGAGTCCACATTTGCCCGTCTGGCGGAACCATTGGGTTATGTTCCCAAAGAGGATATTCTAAAAGCAATTAAGTCTATTGTAGAAGTTCAACGAGATCACGGCAGAAGAGATGATCGTAAGTATAGTAGAATGAAATATTTGATAAGTGACTGGGGGATTGAAAAGTTTAGAAGAGAACTTGAAGACAATTATTACCAAAAGAAATTTGAGCCATTCCGCAAGTTGCCAGAGTGGGAGTTTAAAAGTTACTTGGGATGGCACGAACAGGGTGATGGCAGTTTATTCTGTGGGCTTCATGTTGATAATGGGCGTATTGGGGGAAAGATGAAGAAGGCATTACGAGAGGTTATATCAAAGTATAATTTGAGTATAAGGCTCACACCCAACCAGAATATTATATTGTGTGATATTCGCAATGCATGGAAACGTCCCATCACAACAACTCTTGCACAGGCCGGTCTGCTGCATCCTAGGTATGTAGACCCCCTTAACCAAACTGCGATGGCATGTCCAGCCTTCCCTCTATGCCCATTGGCAATAACTGAAGCTGAACGGGGAATACCTGACATTCTTAAGCGAGTTCGAGCGGTATTTGAGAAGGTTGGTCTAAAGTACAATGAATCTGTTGTTATAAGGGTGACTGGCTGCCCCAACGGTTGTGCTAGGCCATACATGGCTGAACTTGGACTAGTGGGTGATGGTCCCAACAGCTATCAGATATGGCTTGGAGGAACACCCAATCAAACCTCAATAGCAAAAACCTTCATGAACAAGGTCAAGGTTCAAGACCTGGAAAAAGTTTTTGAACCTTTATTTTATCATTGGAAACGCAAGCGACAAGCTAAAGAATCATTCGGCGACTTCACAATACGTATGGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGAGGTGGCACCAACACGTTACAACCTGAAGCTTTTTGCTGATAAGGAGACGTATGAAGCAGTTGATGAACTTGCAAAGTTGCAGGGCAAGAGTGCTCATCAGTTAGCCATGGAAGTCATCCGCAATTTTGTTGCTTCCCAGCAAAATGGGAAAAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

696

Amino Acids

78.19

Weight (kDa)

9.24

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIR_SIR_ferr	PF03460	132 - 186	2.8e-14	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	229 - 403	1e-43	Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR_ferr	PF03460	423 - 476	1.5e-11	Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR	PF01077	502 - 639	1.3e-10	Nitrite and sulphite reductase 4Fe-4S domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014813)

Species	Orthologous Gene IDs
malus_domestica	MD02G1245400.v1.1
rosa_laevigata	RLG00000014016 RLG00000019259
rosa_multiflora	Rmu_co8185588.1_g000001 Rmu_co8508999.1_g000001 Rmu_sc0001630.1_g000014 Rmu_sc0010408.1_g000007 Rmu_ssc0000337.1_g000003 Rmu_ssc0000388.1_g000059
rosa_rugosa	Rorug05G0177000 Rorug05G0286700 Rorug05G0373900 Rorug06G0018300
rosa_samantha	Rh4DG130200 Rh5AG315000 Rh6AG152900 Rh6CG148900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1640
AasI	GACNNNNNNGTC	1 cut(s)	706
Acc65I	GGTACC	1 cut(s)	87
AccB1I	GGYRCC	3 cut(s)	87, 593, 1936
AccBSI	CCGCTC	1 cut(s)	1595
AccI	GTMKAC	1 cut(s)	1488
AcsI	RAATTY	1 cut(s)	1211
AcuI	CTGAAG	4 cut(s)	554, 789, 1572, 1976
AfaI	GTAC	4 cut(s)	89, 362, 409, 1622
AfiI	CCNNNNNNNGG	3 cut(s)	710, 836, 1030
AflII	CTTAAG	2 cut(s)	545, 1580
AflIII	ACRYGT	2 cut(s)	139, 1943
AhlI	ACTAGT	1 cut(s)	1696
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	3 cut(s)	90, 854, 1797
AluBI	AGCT	9 cut(s)	41, 171, 320, 351, 520, 1556, 1719, 1850, 1960
AluI	AGCT	9 cut(s)	41, 171, 320, 351, 520, 1556, 1719, 1850, 1960
Alw21I	GWGCWC	3 cut(s)	60, 173, 2026
Alw26I	GTCTC	4 cut(s)	168, 196, 206, 1970
AlwNI	CAGNNNCTG	3 cut(s)	97, 751, 878
Ama87I	CYCGRG	1 cut(s)	824
AoxI	GGCC	4 cut(s)	690, 780, 1461, 1673
ApeKI	GCWGC	5 cut(s)	41, 320, 632, 1471, 1653
ApoI	RAATTY	1 cut(s)	1211
ArsI	GACNNNNNNTTYG	4 cut(s)	478, 510, 858, 890
Asp718I	GGTACC	1 cut(s)	87
AspA2I	CCTAGG	1 cut(s)	1478
AspS9I	GGNCC	5 cut(s)	486, 541, 691, 1709, 1925
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	5 cut(s)	115, 614, 1289, 1657, 1715
AvaI	CYCGRG	1 cut(s)	824
AvaII	GGWCC	4 cut(s)	486, 541, 1709, 1925
AvrII	CCTAGG	1 cut(s)	1478
BanI	GGYRCC	3 cut(s)	87, 593, 1936
BanII	GRGCYC	3 cut(s)	69, 173, 831
BbsI	GAAGAC	2 cut(s)	142, 1197
Bbv12I	GWGCWC	3 cut(s)	60, 173, 2026
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	5 cut(s)	28, 307, 619, 1458, 1640
BccI	CCATC	7 cut(s)	731, 839, 1257, 1274, 1448, 1504, 1700
BceAI	ACGGC	4 cut(s)	36, 66, 173, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	3 cut(s)	92, 856, 1799
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	4 cut(s)	168, 196, 206, 1970
BcuI	ACTAGT	1 cut(s)	1696
BfaI	CTAG	3 cut(s)	1479, 1671, 1697
BfrI	CTTAAG	2 cut(s)	545, 1580
BglI	GCCNNNNNGGC	1 cut(s)	1028
BisI	GCNGC	9 cut(s)	24, 27, 30, 42, 321, 633, 690, 1472, 1654
BlnI	CCTAGG	1 cut(s)	1478
BlsI	GCNGC	9 cut(s)	25, 28, 31, 43, 322, 634, 691, 1473, 1655
Bme1390I	CCNGG	4 cut(s)	62, 92, 856, 1799
Bme18I	GGWCC	4 cut(s)	486, 541, 1709, 1925
BmeT110I	CYCGRG	1 cut(s)	824
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	5 cut(s)	486, 541, 691, 1709, 1925
BmiI	GGNNCC	9 cut(s)	66, 89, 487, 488, 595, 954, 1035, 1711, 1938
BmrFI	CCNGG	4 cut(s)	62, 92, 856, 1799
BmrI	ACTGGG	1 cut(s)	1168
BmsI	GCATC	3 cut(s)	289, 573, 1483
BmuI	ACTGGG	1 cut(s)	1168
BpiI	GAAGAC	2 cut(s)	142, 1197
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu10I	CCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	942
BpuMI	CCSGG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	1880
BsaJI	CCNNGG	8 cut(s)	69, 91, 453, 523, 777, 854, 1478, 2037
Bsc4I	CCNNNNNNNGG	3 cut(s)	710, 836, 1030
Bse118I	RCCGGY	1 cut(s)	1463
Bse1I	ACTGG	2 cut(s)	1163, 1654
Bse3DI	GCAATG	2 cut(s)	684, 1429
BseBI	CCWGG	3 cut(s)	92, 856, 1799
BseDI	CCNNGG	8 cut(s)	69, 91, 453, 523, 777, 854, 1478, 2037
BseGI	GGATG	5 cut(s)	463, 742, 1268, 1474, 2046
BseLI	CCNNNNNNNGG	3 cut(s)	710, 836, 1030
BseMI	GCAATG	2 cut(s)	684, 1429
BseMII	CTCAG	4 cut(s)	89, 201, 719, 857
BseNI	ACTGG	2 cut(s)	1163, 1654
BseRI	GAGGAG	2 cut(s)	163, 693
BseXI	GCAGC	5 cut(s)	28, 307, 619, 1458, 1640
BseYI	CCCAGC	1 cut(s)	2067
BshFI	GGCC	4 cut(s)	692, 782, 1463, 1675
BshNI	GGYRCC	3 cut(s)	87, 593, 1936
BsiHKAI	GWGCWC	3 cut(s)	60, 173, 2026
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	3 cut(s)	61, 129, 1464
BslFI	GGGAC	3 cut(s)	499, 1422, 1695
BslI	CCNNNNNNNGG	3 cut(s)	710, 836, 1030
BsmAI	GTCTC	4 cut(s)	168, 196, 206, 1970
BsmBI	CGTCTC	3 cut(s)	168, 196, 1970
BsmFI	GGGAC	3 cut(s)	499, 1422, 1695
BsnI	GGCC	4 cut(s)	692, 782, 1463, 1675
BsoBI	CYCGRG	1 cut(s)	824
Bsp1286I	GDGCHC	5 cut(s)	60, 69, 173, 831, 2026
Bsp143I	GATC	5 cut(s)	460, 469, 604, 1102, 1120
Bsp19I	CCATGG	3 cut(s)	453, 523, 2037
BspANI	GGCC	4 cut(s)	692, 782, 1463, 1675
BspCNI	CTCAG	4 cut(s)	90, 202, 718, 856
BspHI	TCATGA	1 cut(s)	1773
BspLI	GGNNCC	9 cut(s)	66, 89, 487, 488, 595, 954, 1035, 1711, 1938
BspT107I	GGYRCC	3 cut(s)	87, 593, 1936
BspTI	CTTAAG	2 cut(s)	545, 1580
BsrBI	CCGCTC	1 cut(s)	1595
BsrDI	GCAATG	2 cut(s)	684, 1429
BsrFI	RCCGGY	1 cut(s)	1463
BsrI	ACTGG	2 cut(s)	1163, 1654
BssAI	RCCGGY	1 cut(s)	1463
BssECI	CCNNGG	8 cut(s)	69, 91, 453, 523, 777, 854, 1478, 2037
BssMI	GATC	5 cut(s)	460, 469, 604, 1102, 1120
BssT1I	CCWWGG	6 cut(s)	69, 453, 523, 777, 1478, 2037
Bst2UI	CCWGG	3 cut(s)	92, 856, 1799
Bst4CI	ACNGT	4 cut(s)	360, 553, 880, 1664
Bst6I	CTCTTC	4 cut(s)	155, 279, 1108, 1174
BstAFI	CTTAAG	2 cut(s)	545, 1580
BstBAI	YACGTR	1 cut(s)	1880
BstC8I	GCNNGC	3 cut(s)	117, 201, 1841
BstDEI	CTNAG	5 cut(s)	98, 210, 644, 705, 843
BstDSI	CCRYGG	3 cut(s)	453, 523, 2037
BstF5I	GGATG	5 cut(s)	463, 742, 1268, 1474, 2046
BstKTI	GATC	5 cut(s)	463, 472, 607, 1105, 1123
BstMAI	GTCTC	4 cut(s)	168, 196, 206, 1970
BstMBI	GATC	5 cut(s)	460, 469, 604, 1102, 1120
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 38, 50, 64, 125, 205, 632, 1028, 1520
BstNI	CCWGG	3 cut(s)	92, 856, 1799
BstNSI	RCATGY	1 cut(s)	1518
BstSCI	CCNGG	4 cut(s)	60, 90, 854, 1797
BstSNI	TACGTA	1 cut(s)	1880
BstV1I	GCAGC	5 cut(s)	28, 307, 619, 1458, 1640
BstV2I	GAAGAC	2 cut(s)	142, 1197
BstXI	CCANNNNNNTGG	1 cut(s)	2075
BsuRI	GGCC	4 cut(s)	692, 782, 1463, 1675
BtgI	CCRYGG	3 cut(s)	453, 523, 2037
BtgZI	GCGATG	1 cut(s)	1523
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	5 cut(s)	463, 742, 1268, 1474, 2046
BtsIMutI	CAGTG	2 cut(s)	813, 876
Cac8I	GCNNGC	3 cut(s)	117, 201, 1841
CaiI	CAGNNNCTG	3 cut(s)	97, 751, 878
CciI	TCATGA	1 cut(s)	1773
Cfr10I	RCCGGY	1 cut(s)	1463
Cfr13I	GGNCC	5 cut(s)	486, 541, 691, 1709, 1925
Csp6I	GTAC	4 cut(s)	88, 361, 408, 1621
CviQI	GTAC	4 cut(s)	88, 361, 408, 1621
DdeI	CTNAG	5 cut(s)	98, 210, 644, 705, 843
DpnI	GATC	5 cut(s)	462, 471, 606, 1104, 1122
DpnII	GATC	5 cut(s)	460, 469, 604, 1102, 1120
DraI	TTTAAA	1 cut(s)	1249
DrdI	GACNNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	1 cut(s)	706
Eam1104I	CTCTTC	4 cut(s)	155, 279, 1108, 1174
EarI	CTCTTC	4 cut(s)	155, 279, 1108, 1174
EciI	GGCGGA	1 cut(s)	1046
Ecl136II	GAGCTC	1 cut(s)	171
Eco105I	TACGTA	1 cut(s)	1880
Eco130I	CCWWGG	6 cut(s)	69, 453, 523, 777, 1478, 2037
Eco24I	GRGCYC	3 cut(s)	69, 173, 831
Eco47I	GGWCC	4 cut(s)	486, 541, 1709, 1925
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	4 cut(s)	554, 789, 1572, 1976
Eco88I	CYCGRG	1 cut(s)	824
EcoICRI	GAGCTC	1 cut(s)	171
EcoO109I	RGGNCCY	2 cut(s)	486, 541
EcoRII	CCWGG	3 cut(s)	90, 854, 1797
EcoT14I	CCWWGG	6 cut(s)	69, 453, 523, 777, 1478, 2037
EcoT22I	ATGCAT	1 cut(s)	1429
EcoT38I	GRGCYC	3 cut(s)	69, 173, 831
ErhI	CCWWGG	6 cut(s)	69, 453, 523, 777, 1478, 2037
Esp3I	CGTCTC	3 cut(s)	168, 196, 1970
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FaqI	GGGAC	3 cut(s)	499, 1422, 1695
FauI	CCCGC	2 cut(s)	208, 282
FblI	GTMKAC	1 cut(s)	1488
Fnu4HI	GCNGC	9 cut(s)	24, 27, 30, 42, 321, 633, 690, 1472, 1654
FokI	GGATG	5 cut(s)	470, 749, 1275, 1461, 2033
FriOI	GRGCYC	3 cut(s)	69, 173, 831
Fsp4HI	GCNGC	9 cut(s)	24, 27, 30, 42, 321, 633, 690, 1472, 1654
FspBI	CTAG	3 cut(s)	1479, 1671, 1697
GluI	GCNGC	9 cut(s)	24, 27, 30, 42, 321, 633, 690, 1472, 1654
GsaI	CCCAGC	1 cut(s)	2071
HaeIII	GGCC	4 cut(s)	692, 782, 1463, 1675
HapII	CCGG	3 cut(s)	61, 129, 1464
HincII	GTYRAC	1 cut(s)	1912
HindII	GTYRAC	1 cut(s)	1912
HindIII	AAGCTT	1 cut(s)	1958
HinfI	GANTC	6 cut(s)	415, 700, 818, 1010, 1628, 1856
HpaII	CCGG	3 cut(s)	61, 129, 1464
HphI	GGTGA	5 cut(s)	115, 614, 1289, 1657, 1715
Hpy166II	GTNNAC	3 cut(s)	1014, 1489, 1912
Hpy188I	TCNGA	5 cut(s)	38, 168, 534, 909, 1725
Hpy188III	TCNNGA	6 cut(s)	751, 767, 1774, 1793, 1901, 1928
Hpy8I	GTNNAC	3 cut(s)	1014, 1489, 1912
Hpy99I	CGWCG	5 cut(s)	10, 13, 22, 49, 52
HpyCH4III	ACNGT	4 cut(s)	360, 553, 880, 1664
HpyCH4IV	ACGT	7 cut(s)	141, 376, 618, 1435, 1879, 1945, 1979
HpyCH4V	TGCA	6 cut(s)	872, 1427, 1457, 1474, 2003, 2011
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 38, 50, 64, 125, 205, 632, 1028, 1520
HpyF3I	CTNAG	5 cut(s)	98, 210, 644, 705, 843
HpySE526I	ACGT	7 cut(s)	141, 376, 618, 1435, 1879, 1945, 1979
KflI	GGGWCCC	1 cut(s)	486
KpnI	GGTACC	1 cut(s)	91
Kzo9I	GATC	5 cut(s)	460, 469, 604, 1102, 1120
Lsp1109I	GCAGC	5 cut(s)	28, 307, 619, 1458, 1640
LweI	GCATC	3 cut(s)	289, 573, 1483
MaeI	CTAG	3 cut(s)	1479, 1671, 1697
MaeII	ACGT	7 cut(s)	141, 376, 618, 1435, 1879, 1945, 1979
MaeIII	GTNAC	8 cut(s)	142, 772, 874, 934, 1154, 1253, 1645, 1946
MalI	GATC	5 cut(s)	462, 471, 606, 1104, 1122
MbiI	CCGCTC	1 cut(s)	1595
MboI	GATC	5 cut(s)	460, 469, 604, 1102, 1120
MboII	GAAGA	8 cut(s)	142, 147, 296, 547, 1125, 1191, 1202, 1348
MhlI	GDGCHC	5 cut(s)	60, 69, 173, 831, 2026
MluCI	AATT	7 cut(s)	480, 867, 1074, 1195, 1211, 1369, 2053
MlyI	GAGTC	2 cut(s)	694, 1019
MmeI	TCCRAC	1 cut(s)	987
Mph1103I	ATGCAT	1 cut(s)	1429
MseI	TTAA	7 cut(s)	279, 546, 609, 1077, 1248, 1497, 1581
MspCI	CTTAAG	2 cut(s)	545, 1580
MspI	CCGG	3 cut(s)	61, 129, 1464
MspR9I	CCNGG	4 cut(s)	62, 92, 856, 1799
MvaI	CCWGG	3 cut(s)	92, 856, 1799
MwoI	GCNNNNNNNGC	9 cut(s)	29, 38, 50, 64, 125, 205, 632, 1028, 1520
NciI	CCSGG	1 cut(s)	62
NcoI	CCATGG	3 cut(s)	453, 523, 2037
NdeII	GATC	5 cut(s)	460, 469, 604, 1102, 1120
NlaIV	GGNNCC	9 cut(s)	66, 89, 487, 488, 595, 954, 1035, 1711, 1938
NmuCI	GTSAC	4 cut(s)	142, 874, 1154, 1645
NsiI	ATGCAT	1 cut(s)	1429
NspI	RCATGY	1 cut(s)	1518
PagI	TCATGA	1 cut(s)	1773
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	415, 818, 1628, 1856
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	9 cut(s)	25, 28, 31, 43, 322, 634, 691, 1473, 1655
PleI	GAGTC	2 cut(s)	694, 1018
PpsI	GAGTC	2 cut(s)	694, 1018
Ppu21I	YACGTR	1 cut(s)	1880
PpuMI	RGGWCCY	2 cut(s)	486, 541
PsiI	TTATAA	1 cut(s)	1640
Psp124BI	GAGCTC	1 cut(s)	173
Psp5II	RGGWCCY	2 cut(s)	486, 541
Psp6I	CCWGG	3 cut(s)	90, 854, 1797
PspFI	CCCAGC	1 cut(s)	2067
PspGI	CCWGG	3 cut(s)	90, 854, 1797
PspN4I	GGNNCC	9 cut(s)	66, 89, 487, 488, 595, 954, 1035, 1711, 1938
PspPI	GGNCC	5 cut(s)	486, 541, 691, 1709, 1925
PspPPI	RGGWCCY	2 cut(s)	486, 541
PsrI	GAACNNNNNNTAC	2 cut(s)	1551, 1583
PstNI	CAGNNNCTG	3 cut(s)	97, 751, 878
RsaI	GTAC	4 cut(s)	89, 362, 409, 1622
RsaNI	GTAC	4 cut(s)	88, 361, 408, 1621
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	7 cut(s)	279, 546, 609, 1077, 1248, 1497, 1581
SatI	GCNGC	9 cut(s)	24, 27, 30, 42, 321, 633, 690, 1472, 1654
Sau3AI	GATC	5 cut(s)	460, 469, 604, 1102, 1120
Sau96I	GGNCC	5 cut(s)	486, 541, 691, 1709, 1925
SchI	GAGTC	2 cut(s)	694, 1019
ScrFI	CCNGG	4 cut(s)	62, 92, 856, 1799
SduI	GDGCHC	5 cut(s)	60, 69, 173, 831, 2026
SfaNI	GCATC	3 cut(s)	289, 573, 1483
SinI	GGWCC	4 cut(s)	486, 541, 1709, 1925
SmlI	CTYRAG	3 cut(s)	545, 957, 1580
SmoI	CTYRAG	3 cut(s)	545, 957, 1580
SnaBI	TACGTA	1 cut(s)	1880
SpeI	ACTAGT	1 cut(s)	1696
Sse9I	AATT	7 cut(s)	480, 867, 1074, 1195, 1211, 1369, 2053
SspI	AATATT	3 cut(s)	243, 1145, 1402
SspMI	CTAG	3 cut(s)	1479, 1671, 1697
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	4 cut(s)	60, 90, 854, 1797
StyI	CCWWGG	6 cut(s)	69, 453, 523, 777, 1478, 2037
TaaI	ACNGT	4 cut(s)	360, 553, 880, 1664
TaiI	ACGT	7 cut(s)	144, 379, 621, 1438, 1882, 1948, 1982
TaqI	TCGA	2 cut(s)	184, 1591
TasI	AATT	7 cut(s)	480, 867, 1074, 1195, 1211, 1369, 2053
TatI	WGTACW	2 cut(s)	360, 1620
TauI	GCSGC	4 cut(s)	26, 29, 32, 692
TfiI	GAWTC	4 cut(s)	415, 818, 1628, 1856
Tru1I	TTAA	7 cut(s)	279, 546, 609, 1077, 1248, 1497, 1581
Tru9I	TTAA	7 cut(s)	279, 546, 609, 1077, 1248, 1497, 1581
TscAI	CASTG	2 cut(s)	820, 883
TseFI	GTSAC	4 cut(s)	142, 874, 1154, 1645
TseI	GCWGC	5 cut(s)	41, 320, 632, 1471, 1653
Tsp45I	GTSAC	4 cut(s)	142, 874, 1154, 1645
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	2 cut(s)	820, 883
Vha464I	CTTAAG	2 cut(s)	545, 1580
VpaK11BI	GGWCC	4 cut(s)	486, 541, 1709, 1925
XapI	RAATTY	1 cut(s)	1211
XceI	RCATGY	1 cut(s)	1518
XmaJI	CCTAGG	1 cut(s)	1478
XmiI	GTMKAC	1 cut(s)	1488
XspI	CTAG	3 cut(s)	1479, 1671, 1697
Zsp2I	ATGCAT	1 cut(s)	1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.