RLG00000014016

Transcriptional activator

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
45740323 .. 45740724
402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014016

Sequence Viewer

Length: 318 bp
ATGAACAACATGCAGGGGCTAGAGGAGAAGAGTATTGTGAGTTCAACGACTTCAACTATAGTTAAGAAGAATCCTGCTGTAGCTAGCATTATAATGTCACTATCTCCACCTGAAAACTATTCGCTTGAGAATGCAGACTTGGTCTATGAGGAATCTGGTGAGATGCTTACCATCACTGTCAGCATGGAAGAGTTCACAGACACATTACGAAACTATATGCAAAAGAACATGAATCTCCAAAAAGGTGACATGTCCAAGGCTTTAGATGCCAACAATGGAAACAAAAATGAAAGGGAGATTGTAAACCTTTTAGTATAG

Protein Analysis

106

Amino Acids

11.71

Weight (kDa)

4.54

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 45, 54
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 170, 257
AsuNHI GCTAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 179
BfaI CTAG 2 cut(s) 20, 84
BfmI CTRYAG 2 cut(s) 57, 78
BmsI GCATC 2 cut(s) 153, 256
BmtI GCTAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 38
BsmI GAATGC 1 cut(s) 136
BspOI GCTAGC 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 23, 183
BstC8I GCNNGC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNSI RCATGY 2 cut(s) 13, 253
BstSFI CTRYAG 2 cut(s) 57, 78
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 85
CviAII CATG 4 cut(s) 10, 184, 229, 250
CviJI RGCY 3 cut(s) 19, 83, 260
CviKI_1 RGCY 3 cut(s) 19, 83, 260
Eam1104I CTCTTC 2 cut(s) 23, 183
EarI CTCTTC 2 cut(s) 23, 183
Eco130I CCWWGG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 13, 187, 232, 253
FatI CATG 4 cut(s) 9, 183, 228, 249
FspBI CTAG 2 cut(s) 20, 84
Hin1II CATG 4 cut(s) 13, 187, 232, 253
HinfI GANTC 3 cut(s) 70, 152, 232
HphI GGTGA 2 cut(s) 170, 257
Hpy166II GTNNAC 2 cut(s) 195, 304
Hpy8I GTNNAC 2 cut(s) 195, 304
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 13, 134, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
Hsp92II CATG 4 cut(s) 13, 187, 232, 253
LpnPI CCDG 3 cut(s) 87, 123, 141
LweI GCATC 2 cut(s) 153, 256
MaeI CTAG 2 cut(s) 20, 84
MaeIII GTNAC 2 cut(s) 96, 245
MboII GAAGA 3 cut(s) 40, 79, 200
MnlI CCTC 2 cut(s) 16, 142
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 266
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 4 cut(s) 13, 187, 232, 253
NmuCI GTSAC 2 cut(s) 96, 245
NspI RCATGY 2 cut(s) 13, 253
PciI ACATGT 1 cut(s) 249
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 70, 152, 232
PflFI GACNNNGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 249
PsiI TTATAA 1 cut(s) 92
PsrI GAACNNNNNNTAC 2 cut(s) 25, 57
PsyI GACNNNGTC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 63
SetI ASST 4 cut(s) 85, 112, 247, 309
SfaNI GCATC 2 cut(s) 153, 256
SfcI CTRYAG 2 cut(s) 57, 78
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SspMI CTAG 2 cut(s) 20, 84
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 178
TfiI GAWTC 3 cut(s) 70, 152, 232
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 2 cut(s) 96, 245
Tsp45I GTSAC 2 cut(s) 96, 245
TspDTI ATGAA 3 cut(s) 17, 245, 303
TspRI CASTG 1 cut(s) 181
Tth111I GACNNNGTC 1 cut(s) 140
XceI RCATGY 2 cut(s) 13, 253
XspI CTAG 2 cut(s) 20, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.