Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8185588.1

Orthogroup ID

OG0014813

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 691

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8185588.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 433 bp

gtatgagttacactaccagatgattacatttggaaaggttttctgcacaaaaagtaaaccaaattgcaacgcatgtccaatgagaggcgagtgcagacacttcgcaagtgcttttgcaagtgctcgacttgccctgccggggccagaggagaagagtattgtaagttcaaatactgcagctgtagctgagaagaatcctgctggagctggcaatataatgtcactacctccacctgaaaactactcgcttcagaaagtaggttcttatagaagtgaaccaatcatagaagaaccagcgacaccagagcaagaattcactaatctatcacaaagtgacattgaagacttgttcaatgaggaatatgaggaggatcctgatgagattcctaccatcaatgtcagcatggaacagttcacagacacattacaaaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

144

Amino Acids

15.98

Weight (kDa)

4.41

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014813)

Species	Orthologous Gene IDs
malus_domestica	MD02G1245400.v1.1
rosa_laevigata	RLG00000014016 RLG00000019259
rosa_multiflora	Rmu_co8185588.1_g000001 Rmu_co8508999.1_g000001 Rmu_sc0001630.1_g000014 Rmu_sc0010408.1_g000007 Rmu_ssc0000337.1_g000003 Rmu_ssc0000388.1_g000059
rosa_rugosa	Rorug05G0177000 Rorug05G0286700 Rorug05G0373900 Rorug06G0018300
rosa_samantha	Rh4DG130200 Rh5AG315000 Rh6AG152900 Rh6CG148900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	366, 379
AcsI	RAATTY	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	84, 139
AgsI	TTSAA	3 cut(s)	169, 342, 353
AluBI	AGCT	3 cut(s)	180, 186, 207
AluI	AGCT	3 cut(s)	180, 186, 207
Alw21I	GWGCWC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	366, 379
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	1 cut(s)	399
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BcnI	CCSGG	1 cut(s)	139
BfmI	CTRYAG	2 cut(s)	175, 181
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	142, 373
BmrFI	CCNGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 139
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	84, 139
BseMII	CTCAG	1 cut(s)	178
BseRI	GAGGAG	2 cut(s)	162, 381
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	2 cut(s)	29, 113
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	84, 139
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	142, 373
BspMAI	CTGCAG	1 cut(s)	179
BspPI	GGATC	2 cut(s)	366, 379
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 183
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	2 cut(s)	175, 181
BstV1I	GCAGC	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	141
CviAII	CATG	2 cut(s)	73, 404
CviJI	RGCY	4 cut(s)	143, 180, 186, 207
CviKI_1	RGCY	4 cut(s)	143, 180, 186, 207
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
DraIII	CACNNNGTG	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	312
FaeI	CATG	2 cut(s)	76, 407
FaiI	YATR	7 cut(s)	4, 74, 216, 268, 285, 364, 405
FatI	CATG	2 cut(s)	72, 403
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	76, 407
HinfI	GANTC	2 cut(s)	194, 383
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	3 cut(s)	57, 276, 415
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	375
Hpy8I	GTNNAC	3 cut(s)	57, 276, 415
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	5 cut(s)	46, 67, 94, 117, 177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 183
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	76, 407
Kzo9I	GATC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	204
Lsp1109I	GCAGC	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	7, 220, 333
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	4 cut(s)	164, 203, 300, 354
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	62, 312
MnlI	CCTC	6 cut(s)	78, 140, 238, 350, 359, 362
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	129, 183
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	76, 407
NlaIV	GGNNCC	2 cut(s)	142, 373
NmuCI	GTSAC	2 cut(s)	220, 333
NspI	RCATGY	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	194, 383
PkrI	GCNGC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	142, 373
PspPI	GGNCC	1 cut(s)	141
PsrI	GAACNNNNNNTAC	2 cut(s)	149, 181
PstI	CTGCAG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	180
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	7 cut(s)	40, 182, 188, 209, 230, 236, 263
SfcI	CTRYAG	2 cut(s)	175, 181
Sse9I	AATT	2 cut(s)	62, 312
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	62, 312
TfiI	GAWTC	2 cut(s)	194, 383
TseFI	GTSAC	2 cut(s)	220, 333
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	2 cut(s)	220, 333
XapI	RAATTY	1 cut(s)	312
XceI	RCATGY	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.