Rmu_sc0001630.1_g000014

Permuted single zf-CXXC unit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001630.1
OG0014813
Physical Location & Seq
Forward (+)
100789 .. 101286
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001630.1_g000014.1.cds

Sequence Viewer

Length: 360 bp
atgcagtgcaagacttgccttgccagggctaaggagaaaagtatagtgagtgcaactgaagacagaaagacctatcaaaaccctggtgagatcaacaatgaatcagtaacactaaagctagaatgcacacagatagtagagcacattgaggacttctatgaggacccagatgaaattcctactattgaactcaacatggaacagttcactcagaactggcaagtttatatgcaacaaaacatggaacttcaagaaggagaaatgtcaaaatctttagttgctctaacaccagatgctgcatttcttcccatgccaaagcttaagaatgtgagcagactactaattgagcatgaagtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

119

Amino Acids

13.78

Weight (kDa)

4.58

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 25
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 2 cut(s) 188, 251
AjnI CCWGG 2 cut(s) 23, 82
AluBI AGCT 2 cut(s) 118, 319
AluI AGCT 2 cut(s) 118, 319
Alw21I GWGCWC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 283
BciT130I CCWGG 2 cut(s) 25, 84
BfaI CTAG 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 320
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 25, 84
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 25, 84
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 24, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 2 cut(s) 25, 84
BseDI CCNNGG 2 cut(s) 24, 82
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 25
BsmI GAATGC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 165
BspTI CTTAAG 1 cut(s) 320
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 24, 82
BssMI GATC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 25, 84
Bst4CI ACNGT 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 30, 210
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 2 cut(s) 25, 84
BstSCI CCNGG 2 cut(s) 23, 82
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 163
CviAII CATG 4 cut(s) 196, 241, 310, 350
CviJI RGCY 3 cut(s) 29, 118, 319
CviKI_1 RGCY 3 cut(s) 29, 118, 319
DdeI CTNAG 2 cut(s) 30, 210
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 23, 82
FaeI CATG 4 cut(s) 199, 244, 313, 353
FaiI YATR 8 cut(s) 44, 159, 197, 228, 230, 242, 311, 351
FatI CATG 4 cut(s) 195, 240, 309, 349
Fnu4HI GCNGC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 297
Hin1II CATG 4 cut(s) 199, 244, 313, 353
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 6 cut(s) 4, 9, 53, 126, 232, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 30, 210
Hsp92II CATG 4 cut(s) 199, 244, 313, 353
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 7 cut(s) 10, 37, 69, 96, 180, 202, 303
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 71, 296
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 174, 342
MnlI CCTC 2 cut(s) 142, 154
MseI TTAA 1 cut(s) 321
MspCI CTTAAG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 25, 84
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 2 cut(s) 25, 84
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 1 cut(s) 90
NlaIII CATG 4 cut(s) 199, 244, 313, 353
NlaIV GGNNCC 1 cut(s) 165
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 23, 82
PspGI CCWGG 2 cut(s) 23, 82
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 25, 84
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 74, 120, 321
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 174, 342
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 23, 82
TaaI ACNGT 1 cut(s) 204
TasI AATT 2 cut(s) 174, 342
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 114, 186
Vha464I CTTAAG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 174
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.