Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014813

Physical Location & Seq

Genomic Coordinates Reverse (-)

45981038 .. 45982518

Gene Structure 1481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG315000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGAAAGTGCTCGAAGCTGCTGATGATGTGTTGTTGCGGAGGAACAAAAACATATCAGCTAGTGTTTTAACTGTTGCAGCTTTTGTTTGGGTGCTCTTTGAATGGCTCAGTTATCATTTCTTGACTCTTGTGGATTTTGCTTTGGTTCTTGGTATGCTTGCTCAATTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Reticulon

Protein Analysis

57

Amino Acids

6.5

Weight (kDa)

5.5

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	9 - 57	1.4e-09	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014813)

Species	Orthologous Gene IDs
malus_domestica	MD02G1245400.v1.1
rosa_laevigata	RLG00000014016 RLG00000019259
rosa_multiflora	Rmu_co8185588.1_g000001 Rmu_co8508999.1_g000001 Rmu_sc0001630.1_g000014 Rmu_sc0010408.1_g000007 Rmu_ssc0000337.1_g000003 Rmu_ssc0000388.1_g000059
rosa_rugosa	Rorug05G0177000 Rorug05G0286700 Rorug05G0373900 Rorug06G0018300
rosa_samantha	Rh4DG130200 Rh5AG315000 Rh6AG152900 Rh6CG148900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	101
AluBI	AGCT	3 cut(s)	17, 59, 80
AluI	AGCT	3 cut(s)	17, 59, 80
Alw21I	GWGCWC	2 cut(s)	12, 96
ApeKI	GCWGC	2 cut(s)	17, 77
Bbv12I	GWGCWC	2 cut(s)	12, 96
BbvI	GCAGC	2 cut(s)	4, 89
BfaI	CTAG	2 cut(s)	60, 172
BisI	GCNGC	2 cut(s)	18, 78
BlsI	GCNGC	2 cut(s)	19, 79
BseMII	CTCAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	4, 89
BsiHKAI	GWGCWC	2 cut(s)	12, 96
Bsp1286I	GDGCHC	2 cut(s)	12, 96
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	4, 89
Cac8I	GCNNGC	1 cut(s)	159
CviJI	RGCY	4 cut(s)	17, 59, 80, 106
CviKI_1	RGCY	4 cut(s)	17, 59, 80, 106
DdeI	CTNAG	1 cut(s)	107
FaiI	YATR	2 cut(s)	53, 155
Fnu4HI	GCNGC	2 cut(s)	18, 78
Fsp4HI	GCNGC	2 cut(s)	18, 78
FspBI	CTAG	2 cut(s)	60, 172
FspEI	CC	8 cut(s)	22, 25, 73, 74, 88, 116, 128, 135
GluI	GCNGC	2 cut(s)	18, 78
HinfI	GANTC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	107
Lsp1109I	GCAGC	2 cut(s)	4, 89
MaeI	CTAG	2 cut(s)	60, 172
MhlI	GDGCHC	2 cut(s)	12, 96
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	19, 79
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	18, 78
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	12, 96
SetI	ASST	3 cut(s)	19, 61, 82
SgeI	CNNG	6 cut(s)	23, 72, 133, 140, 161, 170
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	60, 172
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseI	GCWGC	2 cut(s)	17, 77
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	2 cut(s)	60, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.