Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014813

Physical Location & Seq

Genomic Coordinates Forward (+)

2420138 .. 2421160

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATGATCCGGGCGAGGAAGTTAGCAGCTATCCCTCTTTGTTTTGGAAGGCTTTCTAAAATATCTATTCCCAAGGATGAACCGATTTTATACACTCCGACTCAATATCATGGAGTAGTTAACTTCATGGGATCAACAAACGGAGTAGTTAAATACATGGGATCAACAGACGCTTTTGCAAGACCGGTGTATGAGTACACAACACTTACTGCTTCATCACTTTTGACTTCCGGGAGTCCATGGGAAGACAAATCTGCTTCCATCATCCGCAGAAGCATTGCACAAATCATTCAAGACCTTTGTGTAGCATGTTATTGGCGGATGGATGCCGGAGAAACCCAAGGATCTTTTTCTCTTTCAGATTTGAGTGTTGCGGATGGAAGACTTATCATCCCTCCTTCCAAGGACGGAGATGGGTTGCTAAATGATTCATTTGAAAAGACAATTACTGATATCTTTTTTGGTGATCACATCTCGAGTGGTGAATTTTCGGATTTTATGAAAAGAGTCTCCAATATCAAAACTAAAGAAGACTATAAGAAGCTATATTTTCATACACTCCTCAAAGACAAGGAAGGTCGGATAGATTTTGTGGCATCATCTGTGGAGCGGCTGAGAGGTTTCCCTTCAGTGAATAATCCGGGGAATTTTAATTGGCAATTAGCCTATCGCCTTCAACACACAACTTTCGTGAATATTTCAGGTAAACTGAACACAATTGAGACAGCAAACAATCTTTATGATACATTTAATGACATTTACAAATTTACGAGGATTACGTATGCGCGAAACAACTCATTAGCGGTTGCAATTTATATTAGGAATGCCTTGAGACATTTCAATCACACAAGAATAAGCAAACGCTACTCGAGGAACATTTCAAGGCAATGTGTCACACATAAACTCTATGATCTATTTTCCAAAAGTCCTTTTGAGATGTACCAATTTTTGGAAAAACATGATGGCATGCATGACATCAAGCTGGATATGAATGAGGAGTTTAGAGGCATAAGGAGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Reticulon

Protein Analysis

340

Amino Acids

39.03

Weight (kDa)

9.24

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014813)

Species	Orthologous Gene IDs
malus_domestica	MD02G1245400.v1.1
rosa_laevigata	RLG00000014016 RLG00000019259
rosa_multiflora	Rmu_co8185588.1_g000001 Rmu_co8508999.1_g000001 Rmu_sc0001630.1_g000014 Rmu_sc0010408.1_g000007 Rmu_ssc0000337.1_g000003 Rmu_ssc0000388.1_g000059
rosa_rugosa	Rorug05G0177000 Rorug05G0286700 Rorug05G0373900 Rorug06G0018300
rosa_samantha	Rh4DG130200 Rh5AG315000 Rh6AG152900 Rh6CG148900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	949
AccBSI	CCGCTC	1 cut(s)	610
AccII	CGCG	1 cut(s)	787
AciI	CCGC	5 cut(s)	268, 319, 374, 610, 803
AclWI	GGATC	3 cut(s)	139, 169, 352
AcsI	RAATTY	3 cut(s)	485, 646, 764
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	2 cut(s)	197, 941
AfiI	CCNNNNNNNGG	1 cut(s)	949
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	293, 437, 677, 841, 882
AluBI	AGCT	3 cut(s)	29, 544, 982
AluI	AGCT	3 cut(s)	29, 544, 982
Alw26I	GTCTC	3 cut(s)	514, 716, 826
AlwI	GGATC	3 cut(s)	139, 169, 352
Ama87I	CYCGRG	2 cut(s)	475, 868
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	3 cut(s)	485, 646, 764
AsiGI	ACCGGT	1 cut(s)	184
Asp700I	GAANNNNTTC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	787
AsuC2I	CCSGG	3 cut(s)	11, 232, 642
AsuHPI	GGTGA	2 cut(s)	476, 494
AvaI	CYCGRG	2 cut(s)	475, 868
BbsI	GAAGAC	3 cut(s)	252, 388, 537
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	5 cut(s)	269, 316, 371, 407, 956
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	3 cut(s)	11, 232, 642
BcoDI	GTCTC	3 cut(s)	514, 716, 826
BisI	GCNGC	2 cut(s)	27, 611
BlsI	GCNGC	2 cut(s)	28, 612
Bme1390I	CCNGG	3 cut(s)	11, 232, 642
BmeT110I	CYCGRG	2 cut(s)	475, 868
BmrFI	CCNGG	3 cut(s)	11, 232, 642
BmsI	GCATC	2 cut(s)	316, 605
BpiI	GAAGAC	3 cut(s)	252, 388, 537
BpuEI	CTTGAG	1 cut(s)	850
BpuMI	CCSGG	3 cut(s)	11, 232, 642
BsaAI	YACGTR	1 cut(s)	780
BsaJI	CCNNGG	5 cut(s)	72, 239, 340, 402, 641
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	949
Bse118I	RCCGGY	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	276, 893
BseDI	CCNNGG	5 cut(s)	72, 239, 340, 402, 641
BseGI	GGATG	6 cut(s)	82, 264, 327, 331, 382, 390
BseLI	CCNNNNNNNGG	1 cut(s)	949
BseMI	GCAATG	2 cut(s)	276, 893
BseMII	CTCAG	1 cut(s)	605
BseRI	GAGGAG	2 cut(s)	551, 1010
BseXI	GCAGC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	787
BshTI	ACCGGT	1 cut(s)	184
BsiHKCI	CYCGRG	2 cut(s)	475, 868
BsiSI	CCGG	5 cut(s)	10, 185, 231, 330, 641
BslI	CCNNNNNNNGG	1 cut(s)	949
BsmAI	GTCTC	3 cut(s)	514, 716, 826
BsmI	GAATGC	1 cut(s)	829
BsoBI	CYCGRG	2 cut(s)	475, 868
Bsp143I	GATC	6 cut(s)	6, 131, 161, 344, 466, 910
Bsp19I	CCATGG	1 cut(s)	239
BspACI	CCGC	5 cut(s)	268, 319, 374, 610, 803
BspCNI	CTCAG	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	787
BspPI	GGATC	3 cut(s)	139, 169, 352
BsrBI	CCGCTC	1 cut(s)	610
BsrDI	GCAATG	2 cut(s)	276, 893
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	5 cut(s)	72, 239, 340, 402, 641
BssMI	GATC	6 cut(s)	6, 131, 161, 344, 466, 910
BssT1I	CCWWGG	4 cut(s)	72, 239, 340, 402
BstBAI	YACGTR	1 cut(s)	780
BstC8I	GCNNGC	1 cut(s)	968
BstDEI	CTNAG	1 cut(s)	614
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	6 cut(s)	82, 264, 327, 331, 382, 390
BstFNI	CGCG	1 cut(s)	787
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	6 cut(s)	9, 134, 164, 347, 469, 913
BstMAI	GTCTC	3 cut(s)	514, 716, 826
BstMBI	GATC	6 cut(s)	6, 131, 161, 344, 466, 910
BstNSI	RCATGY	2 cut(s)	312, 970
BstSCI	CCNGG	3 cut(s)	9, 230, 640
BstSNI	TACGTA	1 cut(s)	780
BstUI	CGCG	1 cut(s)	787
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	3 cut(s)	252, 388, 537
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	6 cut(s)	82, 264, 327, 331, 382, 390
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	1 cut(s)	968
CfoI	GCGC	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	184
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	196, 940
CspAI	ACCGGT	1 cut(s)	184
CviAII	CATG	8 cut(s)	110, 127, 157, 240, 309, 959, 967, 971
CviJI	RGCY	6 cut(s)	29, 52, 544, 613, 665, 982
CviKI_1	RGCY	6 cut(s)	29, 52, 544, 613, 665, 982
CviQI	GTAC	2 cut(s)	196, 940
DdeI	CTNAG	1 cut(s)	614
DpnI	GATC	6 cut(s)	8, 133, 163, 346, 468, 912
DpnII	GATC	6 cut(s)	6, 131, 161, 344, 466, 910
EciI	GGCGGA	1 cut(s)	334
Eco105I	TACGTA	1 cut(s)	780
Eco130I	CCWWGG	4 cut(s)	72, 239, 340, 402
Eco32I	GATATC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	2 cut(s)	475, 868
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	4 cut(s)	72, 239, 340, 402
EcoT22I	ATGCAT	1 cut(s)	972
ErhI	CCWWGG	4 cut(s)	72, 239, 340, 402
FaeI	CATG	8 cut(s)	113, 130, 160, 243, 312, 962, 970, 974
FatI	CATG	8 cut(s)	109, 126, 156, 239, 308, 958, 966, 970
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	27, 611
FokI	GGATG	6 cut(s)	89, 251, 334, 338, 377, 389
Fsp4HI	GCNGC	2 cut(s)	27, 611
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	2 cut(s)	27, 611
HapII	CCGG	5 cut(s)	10, 185, 231, 330, 641
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	787
Hin1II	CATG	8 cut(s)	113, 130, 160, 243, 312, 962, 970, 974
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	4 cut(s)	100, 235, 428, 507
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	5 cut(s)	10, 185, 231, 330, 641
HphI	GGTGA	2 cut(s)	476, 494
Hpy166II	GTNNAC	3 cut(s)	121, 198, 707
Hpy188I	TCNGA	4 cut(s)	99, 361, 493, 582
Hpy188III	TCNNGA	3 cut(s)	293, 475, 691
Hpy8I	GTNNAC	3 cut(s)	121, 198, 707
HpyAV	CCTTC	5 cut(s)	42, 408, 569, 636, 683
HpyCH4IV	ACGT	1 cut(s)	779
HpyCH4V	TGCA	4 cut(s)	179, 281, 809, 970
HpyF3I	CTNAG	1 cut(s)	614
HpySE526I	ACGT	1 cut(s)	779
Hsp92II	CATG	8 cut(s)	113, 130, 160, 243, 312, 962, 970, 974
HspAI	GCGC	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	6, 131, 161, 344, 466, 910
LmnI	GCTCC	1 cut(s)	607
LpnPI	CCDG	7 cut(s)	23, 198, 244, 343, 654, 687, 968
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	2 cut(s)	316, 605
MaeII	ACGT	1 cut(s)	779
MaeIII	GTNAC	1 cut(s)	892
MalI	GATC	6 cut(s)	8, 133, 163, 346, 468, 912
MbiI	CCGCTC	1 cut(s)	610
MboI	GATC	6 cut(s)	6, 131, 161, 344, 466, 910
MboII	GAAGA	3 cut(s)	257, 393, 542
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	9 cut(s)	444, 485, 646, 652, 659, 717, 764, 810, 944
MlyI	GAGTC	3 cut(s)	94, 244, 516
MmeI	TCCRAC	2 cut(s)	122, 560
MnlI	CCTC	9 cut(s)	9, 45, 405, 572, 611, 765, 864, 988, 998
Mph1103I	ATGCAT	1 cut(s)	972
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	4 cut(s)	120, 150, 651, 750
MspI	CCGG	5 cut(s)	10, 185, 231, 330, 641
MspR9I	CCNGG	3 cut(s)	11, 232, 642
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	829
MvnI	CGCG	1 cut(s)	787
NciI	CCSGG	3 cut(s)	11, 232, 642
NcoI	CCATGG	1 cut(s)	239
NdeII	GATC	6 cut(s)	6, 131, 161, 344, 466, 910
NlaIII	CATG	8 cut(s)	113, 130, 160, 243, 312, 962, 970, 974
NmuCI	GTSAC	1 cut(s)	892
NsiI	ATGCAT	1 cut(s)	972
NspI	RCATGY	2 cut(s)	312, 970
PaeI	GCATGC	1 cut(s)	970
PaeR7I	CTCGAG	2 cut(s)	475, 868
PcsI	WCGNNNNNNNCGW	1 cut(s)	776
PctI	GAATGC	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	428
PflMI	CCANNNNNTGG	1 cut(s)	949
PfoI	TCCNGGA	1 cut(s)	230
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	28, 612
PleI	GAGTC	3 cut(s)	94, 243, 515
PpsI	GAGTC	3 cut(s)	94, 243, 515
Ppu21I	YACGTR	1 cut(s)	780
PspXI	VCTCGAGB	1 cut(s)	868
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	2 cut(s)	197, 941
RsaNI	GTAC	2 cut(s)	196, 940
SaqAI	TTAA	4 cut(s)	120, 150, 651, 750
SatI	GCNGC	2 cut(s)	27, 611
Sau3AI	GATC	6 cut(s)	6, 131, 161, 344, 466, 910
SchI	GAGTC	3 cut(s)	94, 244, 516
ScrFI	CCNGG	3 cut(s)	11, 232, 642
SetI	ASST	9 cut(s)	31, 300, 546, 580, 622, 706, 782, 984, 1022
SfaNI	GCATC	2 cut(s)	316, 605
Sfr274I	CTCGAG	2 cut(s)	475, 868
SlaI	CTCGAG	2 cut(s)	475, 868
SmlI	CTYRAG	3 cut(s)	475, 829, 868
SmoI	CTYRAG	3 cut(s)	475, 829, 868
SnaBI	TACGTA	1 cut(s)	780
SphI	GCATGC	1 cut(s)	970
Sse9I	AATT	9 cut(s)	444, 485, 646, 652, 659, 717, 764, 810, 944
SsiI	CCGC	5 cut(s)	268, 319, 374, 610, 803
SspI	AATATT	1 cut(s)	697
StyD4I	CCNGG	3 cut(s)	9, 230, 640
StyI	CCWWGG	4 cut(s)	72, 239, 340, 402
TaiI	ACGT	1 cut(s)	782
TaqI	TCGA	2 cut(s)	476, 869
TasI	AATT	9 cut(s)	444, 485, 646, 652, 659, 717, 764, 810, 944
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	613
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	4 cut(s)	120, 150, 651, 750
Tru9I	TTAA	4 cut(s)	120, 150, 651, 750
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	7 cut(s)	93, 115, 204, 420, 515, 542, 1004
TspGWI	ACGGA	2 cut(s)	156, 423
TspRI	CASTG	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	949
XapI	RAATTY	3 cut(s)	485, 646, 764
XceI	RCATGY	2 cut(s)	312, 970
XhoI	CTCGAG	2 cut(s)	475, 868
XmnI	GAANNNNTTC	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.