Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014813

Physical Location & Seq

Genomic Coordinates Forward (+)

32896211 .. 32901421

Gene Structure 5211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0286700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGTACTGGTGTGCATTAATTCTCATACTGACCTTGTCCTCCTCCTCTCTCGTCACCACTGCTCATAAGAGAACCAAAATTTGTACTCCCATCAACCCCATGAACATCACCAACTGCAAGAAACTACTCACTTTGGGAGCTGAACTCGGCTGGAACATCCACAACGAAACCCACATTGACATCTTGTTCACTATTCCAATATCTATGGACGACACACCAAAATGGGTCGCCTGGGGTGTGAACCCGCGTCGGAAAAGGCCGCGGATGATCGGAACCAGGGCCATTATCGCCATTTCACAGGCCAACGGGACTTTGAAGGTCAGCAGATACAACATCACCAGTGACACCAAGCTGGGATGTCGTTTGCAGCCTCTGCAGCCTTCCATAGAGTTCGAGGATGTCGTCGTCCAAAACATGACAGGTGATGTGAAACCTAACAGATACATGTCAATTTTTGCGACGCTAATTTTGCGTCCAGATTTAGCTGCGTACGACATTGCAAGGTTGAACCATGTGTGGCAAGTTGGGTATGAAGCTGATGAGGTTGCTCTGGAGCCTAAGATGCACCCGACGGCTCTCCAGAACGTGGATAGCACAGAGACTACAAACTTGTACAGTTGGAAAGGTATCAGCACTGGACATCGCCGGCATCATCTTAGAACGGTGCATGGGATTCTGAATATTGTGGGATGGGGAACATTGTTGCCCTTTGGAGTGATTATAGCGAGGTACTGCAGAAGATATCCCTTTCATTGTGCACATTGGTTTTTATCGCACGTCTCTTGTCAGATCGTTGGTTACATTCTCGGCACAATTGGTTGGGCAATCGGAATATGGCTCGGACATGCTTCCAAAGAATATCACTTCCACACTCACAATATTCTCGCCATGTTCATATTTGCATTTACAACATTACAAATGATTGCTTTGCGTTTAAGGCCAACGCCAACAGATGATTACCGGAAATACTGGGACATGTACCATCATTTTCTGGGCTACGCACTTCTGGCTGTGATCATATTGAATATATTCCATGGCATTGCCATTTTGAAGCCAGACAAAACCTGGCTATGGGCTTATATTGGAATCCTTGCAGTGCTTGCTTCCATCACATTGGGTTTGGAGATTTATACTTGGTGTAAATTCATGAATTCCAAAATGAAGAAACCAGACACTTCCAGAGAAGTTCAACCTAGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

400

Amino Acids

45.72

Weight (kDa)

9.41

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF568	PF04526	89 - 204	5.8e-19	Protein of unknown function (DUF568)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014813)

Species	Orthologous Gene IDs
malus_domestica	MD02G1245400.v1.1
rosa_laevigata	RLG00000014016 RLG00000019259
rosa_multiflora	Rmu_co8185588.1_g000001 Rmu_co8508999.1_g000001 Rmu_sc0001630.1_g000014 Rmu_sc0010408.1_g000007 Rmu_ssc0000337.1_g000003 Rmu_ssc0000388.1_g000059
rosa_rugosa	Rorug05G0177000 Rorug05G0286700 Rorug05G0373900 Rorug06G0018300
rosa_samantha	Rh4DG130200 Rh5AG315000 Rh6AG152900 Rh6CG148900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccII	CGCG	2 cut(s)	247, 262
AciI	CCGC	3 cut(s)	245, 260, 262
AcsI	RAATTY	3 cut(s)	78, 1142, 1150
AfaI	GTAC	6 cut(s)	5, 85, 491, 614, 731, 980
AfiI	CCNNNNNNNGG	2 cut(s)	586, 1071
AflIII	ACRYGT	2 cut(s)	444, 975
AgsI	TTSAA	5 cut(s)	316, 508, 1024, 1051, 1190
AjiI	CACGTC	1 cut(s)	778
AjnI	CCWGG	3 cut(s)	230, 275, 1064
AluBI	AGCT	4 cut(s)	140, 352, 485, 536
AluI	AGCT	4 cut(s)	140, 352, 485, 536
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	2 cut(s)	593, 784
Alw44I	GTGCAC	1 cut(s)	756
AlwNI	CAGNNNCTG	1 cut(s)	373
AoxI	GGCC	4 cut(s)	257, 279, 300, 938
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	3 cut(s)	367, 376, 485
ApoI	RAATTY	3 cut(s)	78, 1142, 1150
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AseI	ATTAAT	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	1028
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	4 cut(s)	46, 100, 328, 434
BaeGI	GKGCMC	1 cut(s)	760
Bbv12I	GWGCWC	1 cut(s)	760
BbvI	GCAGC	3 cut(s)	379, 388, 472
BccI	CCATC	4 cut(s)	98, 684, 990, 1115
BceAI	ACGGC	1 cut(s)	588
BciT130I	CCWGG	3 cut(s)	232, 277, 1066
BclI	TGATCA	1 cut(s)	1014
BcoDI	GTCTC	2 cut(s)	593, 784
BfaI	CTAG	1 cut(s)	1194
BfmI	CTRYAG	2 cut(s)	374, 733
BisI	GCNGC	4 cut(s)	260, 368, 377, 486
BlsI	GCNGC	4 cut(s)	261, 369, 378, 487
Bme1390I	CCNGG	3 cut(s)	232, 277, 1066
BmgBI	CACGTC	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	274, 555
BmrFI	CCNGG	3 cut(s)	232, 277, 1066
BmrI	ACTGGG	1 cut(s)	979
BmsI	GCATC	2 cut(s)	552, 658
BmuI	ACTGGG	1 cut(s)	979
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BpmI	CTGGAG	2 cut(s)	563, 572
BsaJI	CCNNGG	4 cut(s)	231, 260, 276, 1033
BsaWI	WCCGGW	1 cut(s)	960
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 1071
Bse118I	RCCGGY	1 cut(s)	645
Bse1I	ACTGG	4 cut(s)	11, 339, 640, 974
Bse3DI	GCAATG	2 cut(s)	495, 1038
BseBI	CCWGG	3 cut(s)	232, 277, 1066
BseDI	CCNNGG	4 cut(s)	231, 260, 276, 1033
BseGI	GGATG	5 cut(s)	156, 270, 362, 403, 695
BseLI	CCNNNNNNNGG	2 cut(s)	586, 1071
BseMI	GCAATG	2 cut(s)	495, 1038
BseNI	ACTGG	4 cut(s)	11, 339, 640, 974
BseRI	GAGGAG	2 cut(s)	31, 34
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	3 cut(s)	379, 388, 472
BseYI	CCCAGC	1 cut(s)	352
Bsh1236I	CGCG	2 cut(s)	247, 262
BshFI	GGCC	4 cut(s)	259, 281, 302, 940
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	2 cut(s)	646, 961
BsiWI	CGTACG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	322, 986
BslI	CCNNNNNNNGG	2 cut(s)	586, 1071
BsmAI	GTCTC	2 cut(s)	593, 784
BsmBI	CGTCTC	1 cut(s)	784
BsmFI	GGGAC	2 cut(s)	322, 986
BsnI	GGCC	4 cut(s)	259, 281, 302, 940
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	3 cut(s)	267, 789, 1014
Bsp19I	CCATGG	1 cut(s)	1033
BspACI	CCGC	3 cut(s)	245, 260, 262
BspANI	GGCC	4 cut(s)	259, 281, 302, 940
BspFNI	CGCG	2 cut(s)	247, 262
BspHI	TCATGA	1 cut(s)	1146
BspLI	GGNNCC	2 cut(s)	274, 555
BspMAI	CTGCAG	2 cut(s)	378, 737
BsrDI	GCAATG	2 cut(s)	495, 1038
BsrFI	RCCGGY	1 cut(s)	645
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	4 cut(s)	11, 339, 640, 974
BssAI	RCCGGY	1 cut(s)	645
BssECI	CCNNGG	4 cut(s)	231, 260, 276, 1033
BssMI	GATC	3 cut(s)	267, 789, 1014
BssT1I	CCWWGG	1 cut(s)	1033
Bst2UI	CCWGG	3 cut(s)	232, 277, 1066
Bst4CI	ACNGT	2 cut(s)	617, 664
BstAPI	GCANNNNNTGC	2 cut(s)	373, 1100
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	2 cut(s)	647, 1101
BstDEI	CTNAG	2 cut(s)	558, 656
BstDSI	CCRYGG	2 cut(s)	260, 1033
BstF5I	GGATG	5 cut(s)	156, 270, 362, 403, 695
BstFNI	CGCG	2 cut(s)	247, 262
BstKTI	GATC	3 cut(s)	270, 792, 1017
BstMAI	GTCTC	2 cut(s)	593, 784
BstMBI	GATC	3 cut(s)	267, 789, 1014
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 373, 376, 469, 562, 937, 1007, 1100
BstNI	CCWGG	3 cut(s)	232, 277, 1066
BstNSI	RCATGY	3 cut(s)	448, 848, 979
BstSCI	CCNGG	3 cut(s)	230, 275, 1064
BstSFI	CTRYAG	2 cut(s)	374, 733
BstSLI	GKGCMC	1 cut(s)	760
BstUI	CGCG	2 cut(s)	247, 262
BstV1I	GCAGC	3 cut(s)	379, 388, 472
BstXI	CCANNNNNNTGG	1 cut(s)	1114
BsuRI	GGCC	4 cut(s)	259, 281, 302, 940
BtgI	CCRYGG	2 cut(s)	260, 1033
BtgZI	GCGATG	1 cut(s)	626
BtrI	CACGTC	1 cut(s)	778
BtsCI	GGATG	5 cut(s)	156, 270, 362, 403, 695
BtsI	GCAGTG	2 cut(s)	57, 1101
BtsIMutI	CAGTG	4 cut(s)	57, 346, 633, 1101
Cac8I	GCNNGC	2 cut(s)	647, 1101
CaiI	CAGNNNCTG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	1146
Cfr10I	RCCGGY	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	279
Cfr42I	CCGCGG	1 cut(s)	263
CseI	GACGC	3 cut(s)	236, 461, 469
Csp6I	GTAC	6 cut(s)	4, 84, 490, 613, 730, 979
CviQI	GTAC	6 cut(s)	4, 84, 490, 613, 730, 979
DdeI	CTNAG	2 cut(s)	558, 656
DpnI	GATC	3 cut(s)	269, 791, 1016
DpnII	GATC	3 cut(s)	267, 789, 1014
Eco130I	CCWWGG	1 cut(s)	1033
Eco32I	GATATC	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	1150
EcoRII	CCWGG	3 cut(s)	230, 275, 1064
EcoRV	GATATC	1 cut(s)	743
EcoT14I	CCWWGG	1 cut(s)	1033
ErhI	CCWWGG	1 cut(s)	1033
Esp3I	CGTCTC	1 cut(s)	784
FaqI	GGGAC	2 cut(s)	322, 986
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	1014
Fnu4HI	GCNGC	4 cut(s)	260, 368, 377, 486
FokI	GGATG	5 cut(s)	143, 277, 369, 410, 702
Fsp4HI	GCNGC	4 cut(s)	260, 368, 377, 486
FspBI	CTAG	1 cut(s)	1194
GluI	GCNGC	4 cut(s)	260, 368, 377, 486
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	2 cut(s)	563, 572
HaeIII	GGCC	4 cut(s)	259, 281, 302, 940
HapII	CCGG	2 cut(s)	646, 961
HgaI	GACGC	3 cut(s)	236, 461, 469
HinfI	GANTC	2 cut(s)	673, 1086
HpaII	CCGG	2 cut(s)	646, 961
HphI	GGTGA	4 cut(s)	46, 100, 328, 434
Hpy166II	GTNNAC	3 cut(s)	189, 241, 758
Hpy188I	TCNGA	6 cut(s)	252, 272, 678, 789, 830, 842
Hpy188III	TCNNGA	5 cut(s)	476, 551, 580, 1147, 1179
Hpy8I	GTNNAC	3 cut(s)	189, 241, 758
Hpy99I	CGWCG	4 cut(s)	252, 407, 463, 574
HpyAV	CCTTC	2 cut(s)	310, 390
HpyCH4III	ACNGT	2 cut(s)	617, 664
HpyCH4IV	ACGT	2 cut(s)	585, 777
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 373, 376, 469, 562, 937, 1007, 1100
HpyF3I	CTNAG	2 cut(s)	558, 656
HpySE526I	ACGT	2 cut(s)	585, 777
KroI	GCCGGC	1 cut(s)	645
KroNI	GCCGGC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	1014
KspI	CCGCGG	1 cut(s)	263
Kzo9I	GATC	3 cut(s)	267, 789, 1014
LmnI	GCTCC	2 cut(s)	137, 553
Lsp1109I	GCAGC	3 cut(s)	379, 388, 472
LweI	GCATC	2 cut(s)	552, 658
MaeI	CTAG	1 cut(s)	1194
MaeII	ACGT	2 cut(s)	585, 777
MaeIII	GTNAC	3 cut(s)	52, 341, 797
MalI	GATC	3 cut(s)	269, 791, 1016
MboI	GATC	3 cut(s)	267, 789, 1014
MboII	GAAGA	2 cut(s)	750, 1174
MfeI	CAATTG	1 cut(s)	813
MhlI	GDGCHC	1 cut(s)	760
MluCI	AATT	7 cut(s)	18, 78, 450, 465, 813, 1142, 1150
MmeI	TCCRAC	2 cut(s)	230, 599
MnlI	CCTC	7 cut(s)	49, 52, 55, 381, 388, 535, 720
MroNI	GCCGGC	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	1028
MseI	TTAA	2 cut(s)	17, 935
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	2 cut(s)	646, 961
MspR9I	CCNGG	3 cut(s)	232, 277, 1066
MunI	CAATTG	1 cut(s)	813
MvaI	CCWGG	3 cut(s)	232, 277, 1066
MvnI	CGCG	2 cut(s)	247, 262
MwoI	GCNNNNNNNGC	8 cut(s)	287, 373, 376, 469, 562, 937, 1007, 1100
NaeI	GCCGGC	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	1033
NdeII	GATC	3 cut(s)	267, 789, 1014
NgoMIV	GCCGGC	1 cut(s)	645
NlaIV	GGNNCC	2 cut(s)	274, 555
NmeAIII	GCCGAG	2 cut(s)	126, 786
NmuCI	GTSAC	2 cut(s)	52, 341
NspI	RCATGY	3 cut(s)	448, 848, 979
PagI	TCATGA	1 cut(s)	1146
PciI	ACATGT	2 cut(s)	444, 975
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PdiI	GCCGGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	1028
PfeI	GAWTC	2 cut(s)	673, 1086
Pfl23II	CGTACG	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	4 cut(s)	261, 369, 378, 487
PscI	ACATGT	2 cut(s)	444, 975
PshBI	ATTAAT	1 cut(s)	17
Psp6I	CCWGG	3 cut(s)	230, 275, 1064
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	3 cut(s)	230, 275, 1064
PspLI	CGTACG	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	274, 555
PspPI	GGNCC	1 cut(s)	279
PstI	CTGCAG	2 cut(s)	378, 737
PstNI	CAGNNNCTG	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	6 cut(s)	5, 85, 491, 614, 731, 980
RsaNI	GTAC	6 cut(s)	4, 84, 490, 613, 730, 979
RseI	CAYNNNNRTG	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	17, 935
SatI	GCNGC	4 cut(s)	260, 368, 377, 486
Sau3AI	GATC	3 cut(s)	267, 789, 1014
Sau96I	GGNCC	1 cut(s)	279
ScrFI	CCNGG	3 cut(s)	232, 277, 1066
SduI	GDGCHC	1 cut(s)	760
SfaNI	GCATC	2 cut(s)	552, 658
SfcI	CTRYAG	2 cut(s)	374, 733
Sfr303I	CCGCGG	1 cut(s)	263
SgrBI	CCGCGG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	7 cut(s)	18, 78, 450, 465, 813, 1142, 1150
SsiI	CCGC	3 cut(s)	245, 260, 262
SspI	AATATT	2 cut(s)	682, 880
SspMI	CTAG	1 cut(s)	1194
StyD4I	CCNGG	3 cut(s)	230, 275, 1064
StyI	CCWWGG	1 cut(s)	1033
TaaI	ACNGT	2 cut(s)	617, 664
TaiI	ACGT	2 cut(s)	588, 780
TaqI	TCGA	1 cut(s)	393
TasI	AATT	7 cut(s)	18, 78, 450, 465, 813, 1142, 1150
TatI	WGTACW	3 cut(s)	3, 83, 612
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	673, 1086
Tru1I	TTAA	2 cut(s)	17, 935
Tru9I	TTAA	2 cut(s)	17, 935
TscAI	CASTG	4 cut(s)	64, 346, 640, 1101
TseFI	GTSAC	2 cut(s)	52, 341
TseI	GCWGC	3 cut(s)	367, 376, 485
Tsp45I	GTSAC	2 cut(s)	52, 341
TspDTI	ATGAA	7 cut(s)	116, 546, 740, 883, 1135, 1163, 1175
TspRI	CASTG	4 cut(s)	64, 346, 640, 1101
Tth111I	GACNNNGTC	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	586
VneI	GTGCAC	1 cut(s)	756
VspI	ATTAAT	1 cut(s)	17
XapI	RAATTY	3 cut(s)	78, 1142, 1150
XceI	RCATGY	3 cut(s)	448, 848, 979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1062
XmnI	GAANNNNTTC	1 cut(s)	1028
XspI	CTAG	1 cut(s)	1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.