Rh4DG130200

Permuted single zf-CXXC unit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014813
Physical Location & Seq
Forward (+)
21734381 .. 21734781
401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG130200.1

Sequence Viewer

Length: 231 bp
ATGATAGTAGAGCACATTGAGGACTTCTATGAGGACCCAGATGAAATTCCTACTATTGAACTCAACATGGAACAGTTCACTCAGAACTGGCAAGTTTATATGCAACAAAACATGGAACTTCAAGAAGGAGAAATGTCAAAATCTTTAGTTGCTCTAACACCAGATGCTGCATTTCTTCCCATGCCAAAGCTTAAGAATGTGAGCAGACTACTAATTGAGCATGAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

76

Amino Acids

8.97

Weight (kDa)

4.18

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 45
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 59, 122
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 34
AvaII GGWCC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 154
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 36
BspTI CTTAAG 1 cut(s) 191
BsrI ACTGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 34
CviAII CATG 4 cut(s) 67, 112, 181, 221
CviJI RGCY 1 cut(s) 190
CviKI_1 RGCY 1 cut(s) 190
DdeI CTNAG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 34
FaeI CATG 4 cut(s) 70, 115, 184, 224
FaiI YATR 7 cut(s) 30, 68, 99, 101, 113, 182, 222
FatI CATG 4 cut(s) 66, 111, 180, 220
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
Hin1II CATG 4 cut(s) 70, 115, 184, 224
HindIII AAGCTT 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 103, 170
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 4 cut(s) 70, 115, 184, 224
LpnPI CCDG 3 cut(s) 51, 73, 174
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 2 cut(s) 45, 213
MnlI CCTC 2 cut(s) 13, 25
MseI TTAA 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 191
NlaIII CATG 4 cut(s) 70, 115, 184, 224
NlaIV GGNNCC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 15
SetI ASST 1 cut(s) 192
SfaNI GCATC 1 cut(s) 154
SgeI CNNG 8 cut(s) 50, 79, 100, 104, 124, 134, 173, 193
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 45, 213
TaaI ACNGT 1 cut(s) 75
TasI AATT 2 cut(s) 45, 213
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 57
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.