Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014813

Physical Location & Seq

Genomic Coordinates Reverse (-)

23884684 .. 23885058

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG152900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAACAACATGCAAGGGCTAGAGGAGAAGGGTATTGTGAGTTCAACGACTTCAACTGTAGTCGAGAAGAATCCTGCTGTAGCTGGCAATATAATGTCACTGTCTCCACCTGAAATCTACTCTCTTGAGAATGCAGGTACTTATAGAAGTGAACCAATGATAGAAGAACCAGCAACACCAGATCAAGAATTCAGTAACCTATCACTGAGCGACATTGAAGACTTGGTCTCTGAGGAGCCTGGTGAGATGCCTACCATCACTGTCAACATGGAAGTGTTCACAGACACATTACGAAACTATATGCAAAAGAACATGAATCTCCAAAAAGGTGACATGTCCAAGGCATTAGATGCCAACAATGGAAAACAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

124

Amino Acids

13.65

Weight (kDa)

4.26

Isoelectric Point (pI)

64.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014813)

Species	Orthologous Gene IDs
malus_domestica	MD02G1245400.v1.1
rosa_laevigata	RLG00000014016 RLG00000019259
rosa_multiflora	Rmu_co8185588.1_g000001 Rmu_co8508999.1_g000001 Rmu_sc0001630.1_g000014 Rmu_sc0010408.1_g000007 Rmu_ssc0000337.1_g000003 Rmu_ssc0000388.1_g000059
rosa_rugosa	Rorug05G0177000 Rorug05G0286700 Rorug05G0373900 Rorug06G0018300
rosa_samantha	Rh4DG130200 Rh5AG315000 Rh6AG152900 Rh6CG148900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	45, 54, 218
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	108, 232
ApoI	RAATTY	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	254, 341
BbsI	GAAGAC	1 cut(s)	225
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	108, 232
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	2 cut(s)	57, 78
BfuAI	ACCTGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	237, 340
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	197, 222
BseRI	GAGGAG	2 cut(s)	38, 248
BsmAI	GTCTC	2 cut(s)	108, 232
BsmI	GAATGC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	181
BspCNI	CTCAG	2 cut(s)	198, 223
BspLI	GGNNCC	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	58, 102, 262
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	206, 231
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	108, 232
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	2 cut(s)	13, 337
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	2 cut(s)	57, 78
BstV2I	GAAGAC	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	98, 203, 258
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	4 cut(s)	10, 268, 313, 334
CviJI	RGCY	3 cut(s)	19, 83, 238
CviKI_1	RGCY	3 cut(s)	19, 83, 238
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	206, 231
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	4 cut(s)	13, 271, 316, 337
FaiI	YATR	8 cut(s)	11, 92, 144, 269, 300, 302, 314, 335
FatI	CATG	4 cut(s)	9, 267, 312, 333
FspBI	CTAG	1 cut(s)	20
Hin1II	CATG	4 cut(s)	13, 271, 316, 337
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	70, 316
HphI	GGTGA	2 cut(s)	254, 341
Hpy166II	GTNNAC	3 cut(s)	152, 265, 279
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	64, 125, 185
Hpy8I	GTNNAC	3 cut(s)	152, 265, 279
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	58, 102, 262
HpyCH4V	TGCA	3 cut(s)	13, 134, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	206, 231
Hsp92II	CATG	4 cut(s)	13, 271, 316, 337
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	69, 87, 120, 123, 183, 192, 225, 252
LweI	GCATC	2 cut(s)	237, 340
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	96, 194, 329
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	79, 176, 230
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	2 cut(s)	16, 226
MslI	CAYNNNNRTG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	4 cut(s)	13, 271, 316, 337
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	2 cut(s)	96, 329
NspI	RCATGY	2 cut(s)	13, 337
PciI	ACATGT	1 cut(s)	333
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	70, 316
PflFI	GACNNNGTC	1 cut(s)	224
PscI	ACATGT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	237
PsrI	GAACNNNNNNTAC	2 cut(s)	25, 57
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	5 cut(s)	85, 112, 139, 201, 331
SfaNI	GCATC	2 cut(s)	237, 340
SfcI	CTRYAG	2 cut(s)	57, 78
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	188
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	58, 102, 262
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	70, 316
TscAI	CASTG	3 cut(s)	105, 210, 265
TseFI	GTSAC	2 cut(s)	96, 329
Tsp45I	GTSAC	2 cut(s)	96, 329
TspDTI	ATGAA	2 cut(s)	17, 329
TspRI	CASTG	3 cut(s)	105, 210, 265
Tth111I	GACNNNGTC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	2 cut(s)	13, 337
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.