Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012344

Physical Location & Seq

Genomic Coordinates Forward (+)

16564267 .. 16565450

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAAAGGCTATTGCAGATACTAAACAAGAGAAACGGATTATGCATTACAGCAGCAATCAGAAGATACTGTTAGTGGGTGAGGGCAATTTCTCTTTTGCTTCTTGTTTAGCTAAAGTATTTGGCTCTGCTAAGAACATGGTTGCCACTTCCCTCGAATCCAGAGAGTCAGTATTGGCCCAGTATTCAAATGCAGCGCCAAGAAACTTGAGAAAATTGGAGAACATGGGATGTGTTATACTGCATGAAGTGGATGTACACACCATGAGGCAACACTCTCTCTTAATCGATCAACTGTTTGATCGGATAGTCTTCAACTTTCCTCATGCTGGTTTCGTATTTATGGAAAGCAAGAAGAAGAAAACAAAGTTCTTTATGGAAAGCGACAAGAGGCAAATCGAGTTGCATCAGGATTTGGTGAGGAGATTCTTCACCAGCGCATGTAAGATGCTGAAAGAACGTGGAGAAGTTCATGTGACTCACAAGACCGCACATCCATTCAATAAGTGGGAGATAGTGAAATTAGCAGAAGAGGCTGGGTTATATCTGGTTGAGGAAGCATCGTTTTCAAGAGGGGATTATCCCGGTTATTTAAACAAGAGAGGAAGTGGGAAGAAATGCAACCGCACATTTCCTGTTGGAGAATGTAGCACCTACAAATTTGCCAAGCTGCCGCTTCTTGAATTTTCATTCACAACAATAAAGATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

237

Amino Acids

27.25

Weight (kDa)

9.43

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	24 - 201	7.6e-52	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54880
fragaria_vesca	FvH4_3g22471
malus_domestica	MD03G1204100.v1.1 MD11G1220900.v1.1
prunus_persica	Prupe.4G211300_v2.0.a1
pyrus_communis	pycom03g15470 pycom11g19490
rosa_chinensis	RchiOBHm_Chr5g0039141
rosa_laevigata	RLG00000033897
rosa_multiflora	Rmu_sc0000533.1_g000008 Rmu_ssc0000410.1_g000018 Rmu_ssc0000410.1_g000044
rosa_roxburghii	Rroxscaffold_1G00040360
rosa_rugosa	Rorug05G0177000
rosa_samantha	Rh5BG268300 Rh5CG301100 Rh5DG276100
rosa_wichuraiana	Rw0G001970 Rw5G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	489, 625, 674
AcsI	RAATTY	2 cut(s)	659, 683
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	5 cut(s)	189, 316, 502, 570, 683
AluBI	AGCT	2 cut(s)	113, 670
AluI	AGCT	2 cut(s)	113, 670
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	3 cut(s)	54, 194, 670
ApoI	RAATTY	2 cut(s)	659, 683
AspLEI	GCGC	2 cut(s)	199, 440
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	3 cut(s)	92, 424, 430
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	66, 206, 657
BcnI	CCSGG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	4 cut(s)	55, 195, 671, 674
BlsI	GCNGC	4 cut(s)	56, 196, 672, 675
Bme1390I	CCNGG	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	585
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	415, 438, 569
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	585
Bsa29I	ATCGAT	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	181
BseCI	ATCGAT	1 cut(s)	288
BseGI	GGATG	3 cut(s)	236, 259, 493
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	66, 206, 657
BseYI	CCCAGC	1 cut(s)	536
BshFI	GGCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	329
BsnI	GGCC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	289, 301, 705
BspACI	CCGC	3 cut(s)	489, 625, 674
BspANI	GGCC	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	288
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	289, 301, 705
Bst4CI	ACNGT	2 cut(s)	72, 297
Bst6I	CTCTTC	1 cut(s)	525
BstAUI	TGTACA	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	236, 259, 493
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	199, 440
BstKTI	GATC	3 cut(s)	292, 304, 708
BstMBI	GATC	3 cut(s)	289, 301, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	583
BstV1I	GCAGC	3 cut(s)	66, 206, 657
BstV2I	GAAGAC	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	236, 259, 493
CfoI	GCGC	2 cut(s)	199, 440
Cfr13I	GGNCC	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	8 cut(s)	139, 226, 245, 265, 326, 441, 473, 709
CviJI	RGCY	6 cut(s)	11, 113, 126, 179, 536, 670
CviKI_1	RGCY	6 cut(s)	11, 113, 126, 179, 536, 670
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	3 cut(s)	291, 303, 707
DpnII	GATC	3 cut(s)	289, 301, 705
DraI	TTTAAA	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	48
FaeI	CATG	8 cut(s)	142, 229, 248, 268, 329, 444, 476, 712
FatI	CATG	8 cut(s)	138, 225, 244, 264, 325, 440, 472, 708
Fnu4HI	GCNGC	4 cut(s)	55, 195, 671, 674
FokI	GGATG	3 cut(s)	243, 266, 480
Fsp4HI	GCNGC	4 cut(s)	55, 195, 671, 674
GlaI	GCGC	2 cut(s)	198, 439
GluI	GCNGC	4 cut(s)	55, 195, 671, 674
GsaI	CCCAGC	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	585
HhaI	GCGC	2 cut(s)	199, 440
Hin1II	CATG	8 cut(s)	142, 229, 248, 268, 329, 444, 476, 712
Hin6I	GCGC	2 cut(s)	197, 438
HinP1I	GCGC	2 cut(s)	197, 438
HinfI	GANTC	4 cut(s)	158, 167, 426, 478
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	3 cut(s)	92, 424, 430
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	63, 306
Hpy188III	TCNNGA	4 cut(s)	162, 410, 570, 680
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	72, 297
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	6 cut(s)	17, 46, 194, 244, 406, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	8 cut(s)	142, 229, 248, 268, 329, 444, 476, 712
HspAI	GCGC	2 cut(s)	197, 438
Kzo9I	GATC	3 cut(s)	289, 301, 705
LpnPI	CCDG	9 cut(s)	175, 194, 315, 395, 448, 522, 533, 598, 648
Lsp1109I	GCAGC	3 cut(s)	66, 206, 657
LweI	GCATC	3 cut(s)	415, 438, 569
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	3 cut(s)	291, 303, 707
MboI	GATC	3 cut(s)	289, 301, 705
MboII	GAAGA	7 cut(s)	76, 304, 367, 370, 421, 542, 625
MluCI	AATT	5 cut(s)	88, 215, 521, 659, 683
MlyI	GAGTC	2 cut(s)	176, 472
MmeI	TCCRAC	1 cut(s)	619
Mph1103I	ATGCAT	1 cut(s)	48
MseI	TTAA	2 cut(s)	284, 593
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	3 cut(s)	289, 301, 705
NlaIII	CATG	8 cut(s)	142, 229, 248, 268, 329, 444, 476, 712
NmuCI	GTSAC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	48
NspI	RCATGY	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	158, 426
PkrI	GCNGC	4 cut(s)	56, 196, 672, 675
PleI	GAGTC	2 cut(s)	175, 472
PpsI	GAGTC	2 cut(s)	175, 472
PspFI	CCCAGC	1 cut(s)	536
PspPI	GGNCC	1 cut(s)	178
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	284, 593
SatI	GCNGC	4 cut(s)	55, 195, 671, 674
Sau3AI	GATC	3 cut(s)	289, 301, 705
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	2 cut(s)	176, 472
ScrFI	CCNGG	1 cut(s)	585
SetI	ASST	4 cut(s)	115, 463, 656, 672
SfaNI	GCATC	3 cut(s)	415, 438, 569
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	5 cut(s)	88, 215, 521, 659, 683
SsiI	CCGC	3 cut(s)	489, 625, 674
StyD4I	CCNGG	1 cut(s)	583
TaaI	ACNGT	2 cut(s)	72, 297
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	3 cut(s)	156, 288, 399
TasI	AATT	5 cut(s)	88, 215, 521, 659, 683
TatI	WGTACW	1 cut(s)	256
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	2 cut(s)	158, 426
Tru1I	TTAA	2 cut(s)	284, 593
Tru9I	TTAA	2 cut(s)	284, 593
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	3 cut(s)	54, 194, 670
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	261, 461, 678
TspGWI	ACGGA	1 cut(s)	52
XapI	RAATTY	2 cut(s)	659, 683
XceI	RCATGY	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.