Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012344

Physical Location & Seq

Genomic Coordinates Forward (+)

22291860 .. 22293300

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTTGTCATCAGGACAGATGATGGGCCATGTCGTGGCCCGAACTCAGATGATCTTGTCTCGAAGTAACTTCGCCGATTGTATACGGTGTCAGGGCGTGAGAGTTTCAAAAACCCTAAAAATGGGGACAAAGCGACCCACTTGCCCTTCTTGCGATAAACCTAGCCAGCTCTGTCTCTGCAAGAAGATGAGATCTCCATGTTTTGATAATCAGGTGAGTATTACTATTCTTCAGCATAGTCTCGAGAGAAAACACGCGCTAAATTCTACTCGAATCGCTAGATTAGGGCTTAAGAATGTTGGTGTGACTACTGTTTTCGATGTTCATGATGAGGCAGAGTTCTTAATCAGGGTTATTGGATCGGGTTGCAGCAAGATTGACACGAATCATTTGGATTCTGAGTATAGGGTAGAGAATGTTGCTTCTTTGGAACTTGATGATAGCTTTAAGTTAGGTAGTAGTGGCAATGTGGAGAACTTAGAATCTGAGAAGAATGTGGTGCTTGTTGATCATGGAAGCTTGGAAATTGCTGAAAGTTTGAATCTTTCTCAACATTTGAGTGAAATTTCTTATCGGGATTCGCGGGTTAGGGATAAGATAGGTTCTTATGAAGAAGATTTGATAAAAATCTGTATGAAGAAACATGGTGTCATCAGCAATGTCTCACACTCTTTGATGCTTGAAACCAATGTGAAGGTTCTTAGTTTTGATCATATATTGGCTTCTCCTGCAGCCATGGATGTCTTGGCAAAAGGTTTTATGGTAACAAAGTTTTCAGAAGGAAAGCAAGAGTTTGAGCTCGAGGTTCCTCCTGGATCAGCTTTGTTGTTCCCGAGCGAAGAATCGGTAAAGATCAATTATCTTAAAGAGAAAGAAGAGTTAAAAGTAAGGAATCTGATTGTTCTTGATGGGACTTGGTCGAAGGCTAGAAGAATATACCTTGAGAATCCATGGCTAAAGCTTTTACGTTGCCATGTGAAGCTAGAAATAGAAGGTACAAGTTTATACAAAGAAGTACGACGGCAGCCAAGAGCGGGATGTTTATCCACGATAGAGAGTATTGTATACGCGATGAAGGAGATCGGTGAAGATCCTGAAGGTTTAGATAATATGTTGAATGTTTTTGAATCCATGGTTGAAGATCAACGAAGATGTAAAGATGAGAACTTTAACAAGATTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DTW

Protein Analysis

394

Amino Acids

44.44

Weight (kDa)

6.62

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DTW	PF03942	45 - 105	2.9e-08	DTW domain
DTW	PF03942	273 - 382	1.3e-26	DTW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54880
fragaria_vesca	FvH4_3g22471
malus_domestica	MD03G1204100.v1.1 MD11G1220900.v1.1
prunus_persica	Prupe.4G211300_v2.0.a1
pyrus_communis	pycom03g15470 pycom11g19490
rosa_chinensis	RchiOBHm_Chr5g0039141
rosa_laevigata	RLG00000033897
rosa_multiflora	Rmu_sc0000533.1_g000008 Rmu_ssc0000410.1_g000018 Rmu_ssc0000410.1_g000044
rosa_roxburghii	Rroxscaffold_1G00040360
rosa_rugosa	Rorug05G0177000
rosa_samantha	Rh5BG268300 Rh5CG301100 Rh5DG276100
rosa_wichuraiana	Rw0G001970 Rw5G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	1034
AccI	GTMKAC	2 cut(s)	82, 1065
AccII	CGCG	3 cut(s)	257, 583, 1070
AciI	CCGC	2 cut(s)	583, 1034
AclWI	GGATC	3 cut(s)	367, 823, 1085
AcsI	RAATTY	2 cut(s)	262, 564
AcuI	CTGAAG	2 cut(s)	215, 1116
AfaI	GTAC	2 cut(s)	997, 1017
AfiI	CCNNNNNNNGG	3 cut(s)	34, 121, 1034
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	6 cut(s)	108, 541, 683, 1117, 1127, 1139
AjnI	CCWGG	1 cut(s)	811
AluBI	AGCT	7 cut(s)	169, 444, 519, 799, 821, 961, 982
AluI	AGCT	7 cut(s)	169, 444, 519, 799, 821, 961, 982
Alw21I	GWGCWC	1 cut(s)	801
Alw26I	GTCTC	4 cut(s)	63, 179, 245, 667
AlwI	GGATC	3 cut(s)	367, 823, 1085
Ama87I	CYCGRG	3 cut(s)	242, 800, 832
AoxI	GGCC	2 cut(s)	25, 36
ApeKI	GCWGC	3 cut(s)	369, 731, 1024
ApoI	RAATTY	2 cut(s)	262, 564
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	25, 37
AsuHPI	GGTGA	2 cut(s)	226, 1097
AvaI	CYCGRG	3 cut(s)	242, 800, 832
BanII	GRGCYC	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	801
BbvI	GCAGC	3 cut(s)	381, 743, 1036
BccI	CCATC	2 cut(s)	16, 902
BceAI	ACGGC	1 cut(s)	1037
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BciT130I	CCWGG	1 cut(s)	813
BclI	TGATCA	2 cut(s)	508, 709
BcoDI	GTCTC	4 cut(s)	63, 179, 245, 667
BfaI	CTAG	4 cut(s)	162, 279, 927, 983
BfmI	CTRYAG	1 cut(s)	729
BfrI	CTTAAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	3 cut(s)	370, 732, 1025
BlsI	GCNGC	3 cut(s)	371, 733, 1026
Bme1390I	CCNGG	1 cut(s)	813
BmeT110I	CYCGRG	3 cut(s)	242, 800, 832
BmgT120I	GGNCC	2 cut(s)	25, 37
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	1 cut(s)	813
BmsI	GCATC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	962
BsaBI	GATNNNNATC	2 cut(s)	626, 1042
BsaJI	CCNNGG	3 cut(s)	735, 950, 1131
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 121, 1034
Bse3DI	GCAATG	2 cut(s)	472, 664
Bse8I	GATNNNNATC	2 cut(s)	626, 1042
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	3 cut(s)	735, 950, 1131
BseGI	GGATG	2 cut(s)	745, 1043
BseJI	GATNNNNATC	2 cut(s)	626, 1042
BseLI	CCNNNNNNNGG	3 cut(s)	34, 121, 1034
BseMI	GCAATG	2 cut(s)	472, 664
BseMII	CTCAG	3 cut(s)	59, 390, 477
BseXI	GCAGC	3 cut(s)	381, 743, 1036
Bsh1236I	CGCG	3 cut(s)	257, 583, 1070
BshFI	GGCC	2 cut(s)	27, 38
BsiHKAI	GWGCWC	1 cut(s)	801
BsiHKCI	CYCGRG	3 cut(s)	242, 800, 832
BslFI	GGGAC	2 cut(s)	139, 925
BslI	CCNNNNNNNGG	3 cut(s)	34, 121, 1034
BsmAI	GTCTC	4 cut(s)	63, 179, 245, 667
BsmFI	GGGAC	2 cut(s)	139, 925
BsnI	GGCC	2 cut(s)	27, 38
BsoBI	CYCGRG	3 cut(s)	242, 800, 832
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp19I	CCATGG	3 cut(s)	735, 950, 1131
BspACI	CCGC	2 cut(s)	583, 1034
BspANI	GGCC	2 cut(s)	27, 38
BspCNI	CTCAG	3 cut(s)	58, 391, 478
BspFNI	CGCG	3 cut(s)	257, 583, 1070
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	807
BspMAI	CTGCAG	1 cut(s)	733
BspPI	GGATC	3 cut(s)	367, 823, 1085
BspTI	CTTAAG	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	1034
BsrDI	GCAATG	2 cut(s)	472, 664
BssECI	CCNNGG	3 cut(s)	735, 950, 1131
BssNAI	GTATAC	2 cut(s)	83, 1066
BssT1I	CCWWGG	3 cut(s)	735, 950, 1131
Bst1107I	GTATAC	2 cut(s)	83, 1066
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	2 cut(s)	87, 313
Bst6I	CTCTTC	1 cut(s)	870
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	5 cut(s)	45, 399, 478, 486, 701
BstDSI	CCRYGG	3 cut(s)	735, 950, 1131
BstF5I	GGATG	2 cut(s)	745, 1043
BstFNI	CGCG	3 cut(s)	257, 583, 1070
BstHHI	GCGC	1 cut(s)	259
BstMAI	GTCTC	4 cut(s)	63, 179, 245, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 728
BstNI	CCWGG	1 cut(s)	813
BstSCI	CCNGG	1 cut(s)	811
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	3 cut(s)	257, 583, 1070
BstV1I	GCAGC	3 cut(s)	381, 743, 1036
BstX2I	RGATCY	2 cut(s)	191, 1090
BstYI	RGATCY	2 cut(s)	191, 1090
BstZ17I	GTATAC	2 cut(s)	83, 1066
BsuRI	GGCC	2 cut(s)	27, 38
BtgI	CCRYGG	3 cut(s)	735, 950, 1131
BtgZI	GCGATG	1 cut(s)	1085
BtsCI	GGATG	2 cut(s)	745, 1043
Cac8I	GCNNGC	1 cut(s)	167
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	25, 37
Csp6I	GTAC	2 cut(s)	996, 1016
CviAII	CATG	9 cut(s)	29, 198, 326, 512, 644, 736, 951, 974, 1132
CviQI	GTAC	2 cut(s)	996, 1016
DdeI	CTNAG	5 cut(s)	45, 399, 478, 486, 701
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	799
Eco130I	CCWWGG	3 cut(s)	735, 950, 1131
Eco24I	GRGCYC	1 cut(s)	801
Eco53kI	GAGCTC	1 cut(s)	799
Eco57I	CTGAAG	2 cut(s)	215, 1116
Eco88I	CYCGRG	3 cut(s)	242, 800, 832
EcoICRI	GAGCTC	1 cut(s)	799
EcoRII	CCWGG	1 cut(s)	811
EcoT14I	CCWWGG	3 cut(s)	735, 950, 1131
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	3 cut(s)	735, 950, 1131
FaeI	CATG	9 cut(s)	32, 201, 329, 515, 647, 739, 954, 977, 1135
FaqI	GGGAC	2 cut(s)	139, 925
FatI	CATG	9 cut(s)	28, 197, 325, 511, 643, 735, 950, 973, 1131
FauI	CCCGC	2 cut(s)	576, 1027
FbaI	TGATCA	2 cut(s)	508, 709
FblI	GTMKAC	2 cut(s)	82, 1065
Fnu4HI	GCNGC	3 cut(s)	370, 732, 1025
FokI	GGATG	2 cut(s)	752, 1050
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	3 cut(s)	370, 732, 1025
FspBI	CTAG	4 cut(s)	162, 279, 927, 983
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	370, 732, 1025
HaeIII	GGCC	2 cut(s)	27, 38
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	9 cut(s)	32, 201, 329, 515, 647, 739, 954, 977, 1135
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	2 cut(s)	517, 959
HphI	GGTGA	2 cut(s)	226, 1097
Hpy166II	GTNNAC	2 cut(s)	83, 1066
Hpy188I	TCNGA	6 cut(s)	48, 400, 487, 778, 897, 1184
Hpy188III	TCNNGA	9 cut(s)	12, 60, 242, 244, 326, 575, 832, 905, 1094
Hpy8I	GTNNAC	2 cut(s)	83, 1066
Hpy99I	CGWCG	1 cut(s)	1023
HpyAV	CCTTC	7 cut(s)	156, 688, 773, 916, 986, 1069, 1091
HpyCH4III	ACNGT	2 cut(s)	87, 313
HpyCH4IV	ACGT	1 cut(s)	967
HpyCH4V	TGCA	3 cut(s)	180, 369, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 728
HpyF3I	CTNAG	5 cut(s)	45, 399, 478, 486, 701
HpySE526I	ACGT	1 cut(s)	967
Hsp92II	CATG	9 cut(s)	32, 201, 329, 515, 647, 739, 954, 977, 1135
HspAI	GCGC	1 cut(s)	257
Ksp22I	TGATCA	2 cut(s)	508, 709
LpnPI	CCDG	8 cut(s)	77, 179, 197, 334, 741, 798, 825, 1107
Lsp1109I	GCAGC	3 cut(s)	381, 743, 1036
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	4 cut(s)	162, 279, 927, 983
MaeII	ACGT	1 cut(s)	967
MaeIII	GTNAC	3 cut(s)	65, 304, 763
MbiI	CCGCTC	1 cut(s)	1034
MflI	RGATCY	2 cut(s)	191, 1090
MhlI	GDGCHC	1 cut(s)	801
MluCI	AATT	4 cut(s)	262, 525, 564, 856
MnlI	CCTC	3 cut(s)	325, 796, 819
MseI	TTAA	6 cut(s)	291, 344, 447, 864, 881, 1170
MslI	CAYNNNNRTG	1 cut(s)	558
MspCI	CTTAAG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	813
MvaI	CCWGG	1 cut(s)	813
MvnI	CGCG	3 cut(s)	257, 583, 1070
MwoI	GCNNNNNNNGC	2 cut(s)	150, 728
NcoI	CCATGG	3 cut(s)	735, 950, 1131
NlaIII	CATG	9 cut(s)	32, 201, 329, 515, 647, 739, 954, 977, 1135
NlaIV	GGNNCC	1 cut(s)	807
NmuCI	GTSAC	1 cut(s)	304
PaeR7I	CTCGAG	2 cut(s)	242, 800
PagI	TCATGA	1 cut(s)	325
PflFI	GACNNNGTC	1 cut(s)	916
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	371, 733, 1026
Psp124BI	GAGCTC	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	811
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	2 cut(s)	25, 37
PspXI	VCTCGAGB	1 cut(s)	800
PstI	CTGCAG	1 cut(s)	733
PsuI	RGATCY	2 cut(s)	191, 1090
PsyI	GACNNNGTC	1 cut(s)	916
RsaI	GTAC	2 cut(s)	997, 1017
RsaNI	GTAC	2 cut(s)	996, 1016
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	801
SaqAI	TTAA	6 cut(s)	291, 344, 447, 864, 881, 1170
SatI	GCNGC	3 cut(s)	370, 732, 1025
Sau96I	GGNCC	2 cut(s)	25, 37
ScrFI	CCNGG	1 cut(s)	813
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	1 cut(s)	666
SfcI	CTRYAG	1 cut(s)	729
Sfr274I	CTCGAG	2 cut(s)	242, 800
SlaI	CTCGAG	2 cut(s)	242, 800
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	4 cut(s)	242, 290, 800, 941
SmoI	CTYRAG	4 cut(s)	242, 290, 800, 941
Sse9I	AATT	4 cut(s)	262, 525, 564, 856
SsiI	CCGC	2 cut(s)	583, 1034
SspMI	CTAG	4 cut(s)	162, 279, 927, 983
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	811
StyI	CCWWGG	3 cut(s)	735, 950, 1131
TaaI	ACNGT	2 cut(s)	87, 313
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	6 cut(s)	61, 243, 271, 318, 801, 920
TasI	AATT	4 cut(s)	262, 525, 564, 856
Tru1I	TTAA	6 cut(s)	291, 344, 447, 864, 881, 1170
Tru9I	TTAA	6 cut(s)	291, 344, 447, 864, 881, 1170
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	369, 731, 1024
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	4 cut(s)	314, 624, 650, 1088
Tth111I	GACNNNGTC	1 cut(s)	916
Van91I	CCANNNNNTGG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	290
XapI	RAATTY	2 cut(s)	262, 564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XhoI	CTCGAG	2 cut(s)	242, 800
XmiI	GTMKAC	2 cut(s)	82, 1065
XspI	CTAG	4 cut(s)	162, 279, 927, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.