Prupe.4G211300_v2.0.a1

DTW

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012344
Physical Location & Seq
Forward (+)
13179611 .. 13181356
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G211300.1

Sequence Viewer

Length: 1302 bp
ATGGTGGCTACCCAGGCTACTTCCAAGAGATCCATTTGCCCGTCATGCTCCAAACCCATCCGGCTCTGCCTCTGCACTCGGATTCAGACCCCGGGGCTCCATAACTCTGTAAGTGTGACCATTCTTCAACACAGCCTAGAGAAGAACCACCCGCTTAATTCCACTAGGATTGCCAGATTGGGCCTCAAGAATCTCAACGTAGTTACCGTTTGTGACGTAAATTTTGAAGCCCGGTTCGTTATCCGGTCGCTGGACCCATATTCTCAAACGGGTCCTGTCCGAAATGGTTCAGAAAGTTCAGGTTTTGATCAAGTTGTGGAAAGTAGAGAGACCCAGAAGCTGGTTTTTGAGTATTGTGATGAGGTCAGTTCAGGGAAGGAAAATGTGGGAGAGTCAGAATTTGGGTTATCTGCAAATTTCCCAAAAGAGAAAAATATTAGTAGTTTGATTGAAAGTGATGAGAAATGCAAATTTGGGAGTGAGGCTCAAAACCAATTAGGAGGTGTATATTTTGTAAGCAATTCTGGCTTATCAACCAGTGATGTATTAGTTGTAGGGCAAGAACATGAGTTCACTGATGATAAGCACTTAGATGGACAAGACAATGCTGATGAGGTTTCAACTGCTACCACATTGGATGCAGTATCCAAGCTTTCCAACAAAGGTTTTGATTCAGTTGAAGGTGTCCAAACTGGTAATGATGTGCCTGTCATAGCTGCTACCATTGGTAAGTATGGTGTCATTAGCTCTCTTTCCCATATTTGGATGGCAGAAGGCCATTGTAAGAATCCAAATTTCGATACGATTTTAGACAATGCGTGTGATGCTCTGGCAGAGGGGTTTGTTGTACAAAAGTTGCAAAAGCAGCCATTGAAGGGAAGTGAGGAGTTGGATGAATATCTAGAGTTTGAAATGGAGGTTCCTCCTGGATCTGTACTCTTATTTCCATCTGAAGAAGCAGTTAGTGTCAGTGACCTTGAGGCTATGAATATTGAGGTGAAGAATTTGATTGTTTTGGACGGAACATGGTCAAAGGCAAAGAGAATGTATGTGGAAAATCCCTGGCTGAAACTCTTGCCACACCTGAAGTTGGAATTGGACAAGACGAGCTTGTACGATGAAGTGAGGCTTCAGCCAAAGCCCGGATTTCTGTCCACCATTGAAAGCATTGTATATGCACTGCAGGCAGTAGGGGACAGTACTGAGGGGCTGGACAATCTCTTGGATGTTTTTGAGTCTATGGTTGAGGACCAGAAGCGATGTAAAAAAGAGAGATTAAGCAACGTCTCCCAGCCGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

434

Amino Acids

47.58

Weight (kDa)

4.81

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54880
fragaria_vesca FvH4_3g22471
malus_domestica MD03G1204100.v1.1 MD11G1220900.v1.1
prunus_persica Prupe.4G211300_v2.0.a1
pyrus_communis pycom03g15470 pycom11g19490
rosa_chinensis RchiOBHm_Chr5g0039141
rosa_laevigata RLG00000033897
rosa_multiflora Rmu_sc0000533.1_g000008 Rmu_ssc0000410.1_g000018 Rmu_ssc0000410.1_g000044
rosa_roxburghii Rroxscaffold_1G00040360
rosa_rugosa Rorug05G0177000
rosa_samantha Rh5BG268300 Rh5CG301100 Rh5DG276100
rosa_wichuraiana Rw0G001970 Rw5G024630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 340
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 24, 937
AcsI RAATTY 6 cut(s) 220, 398, 415, 470, 793, 1003
AcuI CTGAAG 3 cut(s) 972, 1106, 1115
AfaI GTAC 4 cut(s) 849, 936, 1115, 1201
AfiI CCNNNNNNNGG 7 cut(s) 250, 340, 762, 875, 1090, 1142, 1296
AgsI TTSAA 8 cut(s) 128, 227, 452, 621, 680, 874, 911, 1163
AjnI CCWGG 3 cut(s) 12, 925, 1061
AjuI GAANNNNNNNTTGG 2 cut(s) 1079, 1111
AluBI AGCT 5 cut(s) 340, 652, 716, 747, 1110
AluI AGCT 5 cut(s) 340, 652, 716, 747, 1110
Alw26I GTCTC 2 cut(s) 323, 1291
AlwI GGATC 2 cut(s) 24, 937
AlwNI CAGNNNCTG 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 2 cut(s) 181, 775
ApeKI GCWGC 2 cut(s) 716, 865
ApoI RAATTY 6 cut(s) 220, 398, 415, 470, 793, 1003
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
Asp700I GAANNNNTTC 1 cut(s) 286
AspS9I GGNCC 4 cut(s) 181, 253, 272, 1249
AsuC2I CCSGG 5 cut(s) 92, 93, 232, 1143, 1296
AsuHPI GGTGA 1 cut(s) 1009
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 3 cut(s) 253, 272, 1249
BanII GRGCYC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 703, 877
BccI CCATC 4 cut(s) 65, 587, 760, 955
BciT130I CCWGG 3 cut(s) 14, 927, 1063
BciVI GTATCC 1 cut(s) 655
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 5 cut(s) 92, 93, 232, 1143, 1296
BcoDI GTCTC 2 cut(s) 323, 1291
BfaI CTAG 3 cut(s) 137, 165, 902
BfmI CTRYAG 1 cut(s) 1181
BfuI GTATCC 1 cut(s) 655
BisI GCNGC 2 cut(s) 717, 866
BlsI GCNGC 2 cut(s) 718, 867
BmcAI AGTACT 1 cut(s) 1201
Bme1390I CCNGG 8 cut(s) 14, 92, 93, 232, 927, 1063, 1143, 1296
Bme18I GGWCC 3 cut(s) 253, 272, 1249
BmeT110I CYCGRG 1 cut(s) 91
BmgT120I GGNCC 4 cut(s) 181, 253, 272, 1249
BmiI GGNNCC 4 cut(s) 98, 255, 273, 921
BmrFI CCNGG 8 cut(s) 14, 92, 93, 232, 927, 1063, 1143, 1296
BmsI GCATC 2 cut(s) 628, 814
BplI GAGNNNNNCTC 2 cut(s) 469, 501
BpuEI CTTGAG 2 cut(s) 170, 998
BpuMI CCSGG 5 cut(s) 92, 93, 232, 1143, 1296
BsaBI GATNNNNATC 1 cut(s) 897
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 6 cut(s) 12, 90, 91, 92, 1061, 1295
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 7 cut(s) 250, 340, 762, 875, 1090, 1142, 1296
Bse1I ACTGG 2 cut(s) 537, 697
Bse8I GATNNNNATC 1 cut(s) 897
BseBI CCWGG 3 cut(s) 14, 927, 1063
BseDI CCNNGG 6 cut(s) 12, 90, 91, 92, 1061, 1295
BseGI GGATG 5 cut(s) 57, 643, 771, 898, 1231
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 7 cut(s) 250, 340, 762, 875, 1090, 1142, 1296
BseMII CTCAG 1 cut(s) 1194
BseNI ACTGG 2 cut(s) 537, 697
BseRI GAGGAG 1 cut(s) 899
BseXI GCAGC 2 cut(s) 703, 877
BseYI CCCAGC 1 cut(s) 1290
BsgI GTGCAG 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 2 cut(s) 183, 777
BsiEI CGRYCG 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 6 cut(s) 61, 92, 232, 244, 1143, 1295
BslFI GGGAC 1 cut(s) 1208
BslI CCNNNNNNNGG 7 cut(s) 250, 340, 762, 875, 1090, 1142, 1296
BsmAI GTCTC 2 cut(s) 323, 1291
BsmBI CGTCTC 1 cut(s) 1291
BsmFI GGGAC 1 cut(s) 1208
BsnI GGCC 2 cut(s) 183, 777
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 847
Bsp143I GATC 3 cut(s) 29, 307, 929
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 183, 777
BspCNI CTCAG 1 cut(s) 1195
BspLI GGNNCC 4 cut(s) 98, 255, 273, 921
BspMAI CTGCAG 1 cut(s) 1185
BspPI GGATC 2 cut(s) 24, 937
BspTNI GGTCTC 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 847
BsrI ACTGG 2 cut(s) 537, 697
BssECI CCNNGG 6 cut(s) 12, 90, 91, 92, 1061, 1295
BssMI GATC 3 cut(s) 29, 307, 929
Bst2UI CCWGG 3 cut(s) 14, 927, 1063
Bst4CI ACNGT 2 cut(s) 208, 1199
BstAUI TGTACA 1 cut(s) 847
BstC8I GCNNGC 1 cut(s) 1185
BstDEI CTNAG 2 cut(s) 589, 1203
BstF5I GGATG 5 cut(s) 57, 643, 771, 898, 1231
BstKTI GATC 3 cut(s) 32, 310, 932
BstMAI GTCTC 2 cut(s) 323, 1291
BstMBI GATC 3 cut(s) 29, 307, 929
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 6 cut(s) 14, 45, 525, 824, 865, 1184
BstNI CCWGG 3 cut(s) 14, 927, 1063
BstSCI CCNGG 8 cut(s) 12, 90, 91, 230, 925, 1061, 1141, 1294
BstSFI CTRYAG 1 cut(s) 1181
BstV1I GCAGC 2 cut(s) 703, 877
BstX2I RGATCY 2 cut(s) 29, 929
BstYI RGATCY 2 cut(s) 29, 929
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 2 cut(s) 183, 777
BtgZI GCGATG 1 cut(s) 1273
BtsCI GGATG 5 cut(s) 57, 643, 771, 898, 1231
BtsI GCAGTG 1 cut(s) 1178
BtsIMutI CAGTG 4 cut(s) 544, 573, 976, 1178
Cac8I GCNNGC 1 cut(s) 1185
CaiI CAGNNNCTG 1 cut(s) 340
Cfr13I GGNCC 4 cut(s) 181, 253, 272, 1249
Cfr9I CCCGGG 1 cut(s) 91
Csp6I GTAC 4 cut(s) 848, 935, 1114, 1200
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 3 cut(s) 45, 566, 1026
CviQI GTAC 4 cut(s) 848, 935, 1114, 1200
DdeI CTNAG 2 cut(s) 589, 1203
DpnI GATC 3 cut(s) 31, 309, 931
DpnII GATC 3 cut(s) 29, 307, 929
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 3 cut(s) 253, 272, 1249
Eco57I CTGAAG 3 cut(s) 972, 1106, 1115
Eco88I CYCGRG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 3 cut(s) 12, 925, 1061
EcoT38I GRGCYC 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 1291
FaeI CATG 3 cut(s) 48, 569, 1029
FalI AAGNNNNNCTT 4 cut(s) 1094, 1126, 1113, 1145
FaqI GGGAC 1 cut(s) 1208
FatI CATG 3 cut(s) 44, 565, 1025
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 717, 866
FokI GGATG 5 cut(s) 44, 650, 778, 905, 1238
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 717, 866
FspBI CTAG 3 cut(s) 137, 165, 902
GluI GCNGC 2 cut(s) 717, 866
GsaI CCCAGC 1 cut(s) 1294
HaeIII GGCC 2 cut(s) 183, 777
HapII CCGG 6 cut(s) 61, 92, 232, 244, 1143, 1295
Hin1II CATG 3 cut(s) 48, 569, 1029
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 6 cut(s) 82, 190, 392, 671, 787, 1235
HpaII CCGG 6 cut(s) 61, 92, 232, 244, 1143, 1295
HphI GGTGA 1 cut(s) 1009
Hpy166II GTNNAC 2 cut(s) 573, 1155
Hpy188I TCNGA 6 cut(s) 81, 87, 281, 292, 397, 952
Hpy188III TCNNGA 2 cut(s) 187, 902
Hpy8I GTNNAC 2 cut(s) 573, 1155
HpyAV CCTTC 4 cut(s) 370, 674, 767, 868
HpyCH4III ACNGT 2 cut(s) 208, 1199
HpyCH4IV ACGT 3 cut(s) 198, 216, 1284
HpyCH4V TGCA 7 cut(s) 75, 413, 468, 641, 859, 1178, 1183
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 45, 525, 824, 865, 1184
HpyF3I CTNAG 2 cut(s) 589, 1203
HpySE526I ACGT 3 cut(s) 198, 216, 1284
Hsp92II CATG 3 cut(s) 48, 569, 1029
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 29, 307, 929
LmnI GCTCC 2 cut(s) 53, 102
Lsp1109I GCAGC 2 cut(s) 703, 877
LweI GCATC 2 cut(s) 628, 814
MaeI CTAG 3 cut(s) 137, 165, 902
MaeII ACGT 3 cut(s) 198, 216, 1284
MaeIII GTNAC 4 cut(s) 115, 202, 212, 971
MalI GATC 3 cut(s) 31, 309, 931
MboI GATC 3 cut(s) 29, 307, 929
MboII GAAGA 4 cut(s) 116, 154, 965, 1012
MflI RGATCY 2 cut(s) 29, 929
MhlI GDGCHC 1 cut(s) 99
MlyI GAGTC 2 cut(s) 401, 1244
MmeI TCCRAC 3 cut(s) 681, 870, 1071
MroXI GAANNNNTTC 1 cut(s) 286
MseI TTAA 2 cut(s) 156, 1277
MslI CAYNNNNRTG 1 cut(s) 591
MspI CCGG 6 cut(s) 61, 92, 232, 244, 1143, 1295
MspR9I CCNGG 8 cut(s) 14, 92, 93, 232, 927, 1063, 1143, 1296
MvaI CCWGG 3 cut(s) 14, 927, 1063
MwoI GCNNNNNNNGC 6 cut(s) 14, 45, 525, 824, 865, 1184
NciI CCSGG 5 cut(s) 92, 93, 232, 1143, 1296
NdeII GATC 3 cut(s) 29, 307, 929
NlaIII CATG 3 cut(s) 48, 569, 1029
NlaIV GGNNCC 4 cut(s) 98, 255, 273, 921
NmuCI GTSAC 3 cut(s) 115, 212, 971
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 286
PfeI GAWTC 4 cut(s) 82, 190, 671, 787
PflMI CCANNNNNTGG 1 cut(s) 340
PfoI TCCNGGA 1 cut(s) 925
PkrI GCNGC 2 cut(s) 718, 867
PleI GAGTC 2 cut(s) 400, 1243
PpsI GAGTC 2 cut(s) 400, 1243
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 3 cut(s) 12, 925, 1061
PspFI CCCAGC 1 cut(s) 1290
PspGI CCWGG 3 cut(s) 12, 925, 1061
PspN4I GGNNCC 4 cut(s) 98, 255, 273, 921
PspPI GGNCC 4 cut(s) 181, 253, 272, 1249
PspPPI RGGWCCY 1 cut(s) 272
PstI CTGCAG 1 cut(s) 1185
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 2 cut(s) 29, 929
RsaI GTAC 4 cut(s) 849, 936, 1115, 1201
RsaNI GTAC 4 cut(s) 848, 935, 1114, 1200
RseI CAYNNNNRTG 1 cut(s) 591
SaqAI TTAA 2 cut(s) 156, 1277
SatI GCNGC 2 cut(s) 717, 866
Sau3AI GATC 3 cut(s) 29, 307, 929
Sau96I GGNCC 4 cut(s) 181, 253, 272, 1249
ScaI AGTACT 1 cut(s) 1201
SchI GAGTC 2 cut(s) 401, 1244
ScrFI CCNGG 8 cut(s) 14, 92, 93, 232, 927, 1063, 1143, 1296
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 2 cut(s) 628, 814
SfcI CTRYAG 1 cut(s) 1181
SinI GGWCC 3 cut(s) 253, 272, 1249
SmaI CCCGGG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 2 cut(s) 185, 977
SmoI CTYRAG 2 cut(s) 185, 977
SsiI CCGC 1 cut(s) 152
SspI AATATT 2 cut(s) 436, 991
SspMI CTAG 3 cut(s) 137, 165, 902
StyD4I CCNGG 8 cut(s) 12, 90, 91, 230, 925, 1061, 1141, 1294
TaaI ACNGT 2 cut(s) 208, 1199
TaiI ACGT 3 cut(s) 201, 219, 1287
TaqI TCGA 1 cut(s) 798
TatI WGTACW 3 cut(s) 847, 934, 1199
TfiI GAWTC 4 cut(s) 82, 190, 671, 787
Tru1I TTAA 2 cut(s) 156, 1277
Tru9I TTAA 2 cut(s) 156, 1277
TscAI CASTG 4 cut(s) 544, 580, 976, 1185
TseFI GTSAC 3 cut(s) 115, 212, 971
TseI GCWGC 2 cut(s) 716, 865
Tsp45I GTSAC 3 cut(s) 115, 212, 971
TspDTI ATGAA 3 cut(s) 909, 1001, 1134
TspGWI ACGGA 1 cut(s) 1035
TspMI CCCGGG 1 cut(s) 91
TspRI CASTG 4 cut(s) 544, 580, 976, 1185
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 3 cut(s) 253, 272, 1249
XapI RAATTY 6 cut(s) 220, 398, 415, 470, 793, 1003
XbaI TCTAGA 1 cut(s) 901
XmaI CCCGGG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 286
XspI CTAG 3 cut(s) 137, 165, 902
ZrmI AGTACT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.