RchiOBHm_Chr5g0039141

DTW

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012344
Physical Location & Seq
Forward (+)
33891708 .. 33894303
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31772

Sequence Viewer

Length: 1419 bp
ATGTTGGTTCGGTTCGTGACTCCGATCCACTCACAGACCCGAAACAATCGTTTCTGCCCACTTCTCCATAAACCCTACTTTCTTCCCCAAACCCCAAAAATGGTGACTCCTACTCAGGCCATTTCCAAGAGACCCATTTGCCCTTCCTGCTCCAAACCCGTCCGGCTCTGCCTCTGCAATCGGATCCACAACCCGGGGCTCCACAACTCTGTAAGTGTGACCATTCTTCAGCACAGCTTTGAGAAGAACCACCCACTTAATTCAGCTAGGATTGCCAGATTAGGGCTTAAGAATCTGAAAGTGGTTACTGTTTTTGATGTACATTTTGATGCCCGGTTCGTTATCCGGTTGCTTGACCCGGATTCGGACCGGAATGGTTCAAAGGGTGCATCTTTTGATGGAGCTGTGGAAACTGGAGAGACCCAGAAGGTGGATTCTGGGTTTTGTGAGTCGGAAATTGGGGGTTTTGAAAATTCATCAAAACAGAGAAGGTGTAGTAGTGTGGTTGATTGTAATGAGCAATGTAGTTTTGGGAATGATGTAGGTGATATAAGTAGTGCTCAAAATCAATTAGGAGGTGTGGATTCTGCAGAAAGTTGTAGTGTACCGACCGGTGATGCATTACTTGTAGAGCAAGAACATGAATTCACTAGTGAAGGTGTGTTTGCTTTGGAGGCTTGTCATAAGCATTTGGATGGACAATCCAATGTGGATGAGGCTTCAACTGCTGTGACATTGGATTCACTATCCGATGAACACAAGTTTTCTGGTACAGATTTTGATTTGGTTGAAGGTGTTGAAGTTAGTAATGCTGGACCTGTTATAACGGCTACAATTGGCAAGAATGGTGTCATTAGCTCACTTACTCATACTTGGATGCCACAAACCCATCACAAGAATTCACAATTTGATACGATCTCAGACATTACAGAAGCGCGTGAGGCTCTGGCAAAGGGATTCATTGTACAAAAGTTGCAAAAGCAGCCACCCAAAGGAGATGTAGAGTTAGATGAAGCTGTAGAGTTTGAAGTAGAAGTTCCTCCGGGGTCTGTTCTCTTGTTTCCATCCAAAGAAGCAGTTAGTGCTAGTGACCTTGAAGCCATGGATATCAAGGTCAAGAATTTGATTGTCTTGGATGGAACATGGTCAAAGGCAAAGAGAATGTATGTGGAAAACCCCTGGTTGAAGCTATTGCCACACTTGAGGTTGGATATGGACAAGCTGAGCTTGTACAATGAAGTGAGAGTCCAGCCCAAGCCGGGGTTTCTGTCCACCATTGAGAGCATTGTGTATGCACTAAAGGCGGTAGGGGACAGTCCGGAAGGGCTGGACAATCTCTTGGATGTTTTCGAGTCCATGGTTGGAGACCAGAGACGATGTAAAGAAGAGAGATTGAGCAATGTATCGCAGCCCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

472

Amino Acids

51.85

Weight (kDa)

5.43

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 44 - 106 1.7e-09 DTW domain
DTW PF03942 291 - 457 5.5e-28 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54880
fragaria_vesca FvH4_3g22471
malus_domestica MD03G1204100.v1.1 MD11G1220900.v1.1
prunus_persica Prupe.4G211300_v2.0.a1
pyrus_communis pycom03g15470 pycom11g19490
rosa_chinensis RchiOBHm_Chr5g0039141
rosa_laevigata RLG00000033897
rosa_multiflora Rmu_sc0000533.1_g000008 Rmu_ssc0000410.1_g000018 Rmu_ssc0000410.1_g000044
rosa_roxburghii Rroxscaffold_1G00040360
rosa_rugosa Rorug05G0177000
rosa_samantha Rh5BG268300 Rh5CG301100 Rh5DG276100
rosa_wichuraiana Rw0G001970 Rw5G024630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 824
AccB7I CCANNNNNTGG 1 cut(s) 430
AccII CGCG 1 cut(s) 937
AccIII TCCGGA 1 cut(s) 1318
AciI CCGC 1 cut(s) 1304
AclWI GGATC 3 cut(s) 19, 178, 191
AcsI RAATTY 4 cut(s) 472, 644, 898, 1120
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 5 cut(s) 321, 606, 772, 966, 1232
AfiI CCNNNNNNNGG 8 cut(s) 100, 193, 282, 364, 430, 992, 1259, 1260
AflII CTTAAG 1 cut(s) 287
AgeI ACCGGT 1 cut(s) 611
AgsI TTSAA 8 cut(s) 381, 470, 723, 791, 800, 1028, 1097, 1186
AhlI ACTAGT 1 cut(s) 650
AjnI CCWGG 1 cut(s) 1178
AluBI AGCT 8 cut(s) 237, 266, 404, 858, 1016, 1189, 1222, 1227
AluI AGCT 8 cut(s) 237, 266, 404, 858, 1016, 1189, 1222, 1227
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 4 cut(s) 124, 413, 1359, 1366
AlwI GGATC 3 cut(s) 19, 178, 191
Ama87I CYCGRG 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 1318
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 982, 1408
ApoI RAATTY 4 cut(s) 472, 644, 898, 1120
AsiGI ACCGGT 1 cut(s) 611
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 2 cut(s) 367, 815
AsuC2I CCSGG 7 cut(s) 194, 195, 334, 359, 1044, 1260, 1413
AsuHPI GGTGA 3 cut(s) 115, 557, 626
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 2 cut(s) 367, 815
BamHI GGATCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 1 cut(s) 994
BccI CCATC 5 cut(s) 392, 689, 897, 1072, 1130
BceAI ACGGC 1 cut(s) 843
BciT130I CCWGG 1 cut(s) 1180
BcnI CCSGG 7 cut(s) 194, 195, 334, 359, 1044, 1260, 1413
BcoDI GTCTC 4 cut(s) 124, 413, 1359, 1366
BcuI ACTAGT 1 cut(s) 650
BfaI CTAG 3 cut(s) 267, 651, 1086
BfmI CTRYAG 2 cut(s) 588, 1017
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 2 cut(s) 983, 1409
BlpI GCTNAGC 1 cut(s) 1223
BlsI GCNGC 2 cut(s) 984, 1410
Bme1390I CCNGG 8 cut(s) 194, 195, 334, 359, 1044, 1180, 1260, 1413
Bme18I GGWCC 2 cut(s) 367, 815
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 367, 815
BmiI GGNNCC 2 cut(s) 185, 200
BmrFI CCNGG 8 cut(s) 194, 195, 334, 359, 1044, 1180, 1260, 1413
BmsI GCATC 4 cut(s) 319, 398, 607, 867
BpmI CTGGAG 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 1223
BpuEI CTTGAG 1 cut(s) 1222
BpuMI CCSGG 7 cut(s) 194, 195, 334, 359, 1044, 1260, 1413
BsaI GGTCTC 3 cut(s) 124, 413, 1359
BsaJI CCNNGG 7 cut(s) 193, 194, 1043, 1101, 1178, 1259, 1356
BsaWI WCCGGW 4 cut(s) 345, 369, 611, 1318
Bsc4I CCNNNNNNNGG 8 cut(s) 100, 193, 282, 364, 430, 992, 1259, 1260
Bse118I RCCGGY 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 418
Bse3DI GCAATG 2 cut(s) 527, 1405
BseAI TCCGGA 1 cut(s) 1318
BseBI CCWGG 1 cut(s) 1180
BseDI CCNNGG 7 cut(s) 193, 194, 1043, 1101, 1178, 1259, 1356
BseGI GGATG 6 cut(s) 700, 718, 882, 1064, 1141, 1348
BseLI CCNNNNNNNGG 8 cut(s) 100, 193, 282, 364, 430, 992, 1259, 1260
BseMI GCAATG 2 cut(s) 527, 1405
BseMII CTCAG 3 cut(s) 128, 933, 1214
BseNI ACTGG 1 cut(s) 418
BseXI GCAGC 1 cut(s) 994
Bsh1236I CGCG 1 cut(s) 937
Bsh1285I CGRYCG 1 cut(s) 612
BshFI GGCC 1 cut(s) 119
BshTI ACCGGT 1 cut(s) 611
BsiEI CGRYCG 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 562
BsiHKCI CYCGRG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 1325
BslI CCNNNNNNNGG 8 cut(s) 100, 193, 282, 364, 430, 992, 1259, 1260
BsmAI GTCTC 4 cut(s) 124, 413, 1359, 1366
BsmBI CGTCTC 1 cut(s) 1366
BsmFI GGGAC 1 cut(s) 1325
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 3 cut(s) 124, 413, 1359
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 201, 562
Bsp13I TCCGGA 1 cut(s) 1318
Bsp1407I TGTACA 3 cut(s) 319, 964, 1230
Bsp143I GATC 3 cut(s) 24, 183, 915
Bsp1720I GCTNAGC 1 cut(s) 1223
Bsp19I CCATGG 2 cut(s) 1101, 1356
BspACI CCGC 1 cut(s) 1304
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 3 cut(s) 127, 932, 1215
BspEI TCCGGA 1 cut(s) 1318
BspFNI CGCG 1 cut(s) 937
BspLI GGNNCC 2 cut(s) 185, 200
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 3 cut(s) 19, 178, 191
BspTI CTTAAG 1 cut(s) 287
BspTNI GGTCTC 3 cut(s) 124, 413, 1359
BsrDI GCAATG 2 cut(s) 527, 1405
BsrFI RCCGGY 1 cut(s) 611
BsrGI TGTACA 3 cut(s) 319, 964, 1230
BsrI ACTGG 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 611
BssECI CCNNGG 7 cut(s) 193, 194, 1043, 1101, 1178, 1259, 1356
BssMI GATC 3 cut(s) 24, 183, 915
BssT1I CCWWGG 2 cut(s) 1101, 1356
Bst2UI CCWGG 1 cut(s) 1180
Bst4CI ACNGT 2 cut(s) 310, 1316
Bst6I CTCTTC 1 cut(s) 1380
BstAFI CTTAAG 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstAUI TGTACA 3 cut(s) 319, 964, 1230
BstDEI CTNAG 3 cut(s) 114, 919, 1223
BstDSI CCRYGG 2 cut(s) 1101, 1356
BstF5I GGATG 6 cut(s) 700, 718, 882, 1064, 1141, 1348
BstFNI CGCG 1 cut(s) 937
BstHHI GCGC 1 cut(s) 937
BstKTI GATC 3 cut(s) 27, 186, 918
BstMAI GTCTC 4 cut(s) 124, 413, 1359, 1366
BstMBI GATC 3 cut(s) 24, 183, 915
BstMCI CGRYCG 1 cut(s) 612
BstMWI GCNNNNNNNGC 8 cut(s) 147, 272, 674, 725, 941, 982, 1082, 1301
BstNI CCWGG 1 cut(s) 1180
BstSCI CCNGG 8 cut(s) 192, 193, 332, 357, 1042, 1178, 1258, 1411
BstSFI CTRYAG 2 cut(s) 588, 1017
BstUI CGCG 1 cut(s) 937
BstV1I GCAGC 1 cut(s) 994
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 2 cut(s) 1101, 1356
BtsCI GGATG 6 cut(s) 700, 718, 882, 1064, 1141, 1348
CfoI GCGC 1 cut(s) 937
Cfr10I RCCGGY 1 cut(s) 611
Cfr13I GGNCC 2 cut(s) 367, 815
Cfr9I CCCGGG 1 cut(s) 193
CpoI CGGWCCG 1 cut(s) 367
Csp6I GTAC 5 cut(s) 320, 605, 771, 965, 1231
CspAI ACCGGT 1 cut(s) 611
CspI CGGWCCG 1 cut(s) 367
CviAII CATG 4 cut(s) 641, 1102, 1143, 1357
CviQI GTAC 5 cut(s) 320, 605, 771, 965, 1231
DdeI CTNAG 3 cut(s) 114, 919, 1223
DpnI GATC 3 cut(s) 26, 185, 917
DpnII GATC 3 cut(s) 24, 183, 915
Eam1104I CTCTTC 1 cut(s) 1380
EarI CTCTTC 1 cut(s) 1380
Eco130I CCWWGG 2 cut(s) 1101, 1356
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 3 cut(s) 124, 413, 1359
Eco32I GATATC 1 cut(s) 1108
Eco47I GGWCC 2 cut(s) 367, 815
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 644, 898
EcoRII CCWGG 1 cut(s) 1178
EcoRV GATATC 1 cut(s) 1108
EcoT14I CCWWGG 2 cut(s) 1101, 1356
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 2 cut(s) 1101, 1356
Esp3I CGTCTC 1 cut(s) 1366
FaeI CATG 4 cut(s) 644, 1105, 1146, 1360
FalI AAGNNNNNCTT 2 cut(s) 1211, 1243
FaqI GGGAC 1 cut(s) 1325
FatI CATG 4 cut(s) 640, 1101, 1142, 1356
Fnu4HI GCNGC 2 cut(s) 983, 1409
FokI GGATG 6 cut(s) 707, 725, 889, 1051, 1148, 1355
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 983, 1409
FspBI CTAG 3 cut(s) 267, 651, 1086
GlaI GCGC 1 cut(s) 936
GluI GCNGC 2 cut(s) 983, 1409
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 119
HhaI GCGC 1 cut(s) 937
Hin1II CATG 4 cut(s) 644, 1105, 1146, 1360
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HphI GGTGA 3 cut(s) 115, 557, 626
Hpy166II GTNNAC 2 cut(s) 605, 1272
Hpy188I TCNGA 7 cut(s) 24, 183, 297, 367, 454, 751, 922
Hpy188III TCNNGA 3 cut(s) 16, 1117, 1319
Hpy8I GTNNAC 2 cut(s) 605, 1272
HpyAV CCTTC 6 cut(s) 153, 421, 483, 650, 785, 1316
HpyCH4III ACNGT 2 cut(s) 310, 1316
HpyCH4V TGCA 6 cut(s) 177, 389, 590, 620, 976, 1295
HpyF10VI GCNNNNNNNGC 8 cut(s) 147, 272, 674, 725, 941, 982, 1082, 1301
HpyF3I CTNAG 3 cut(s) 114, 919, 1223
Hsp92II CATG 4 cut(s) 644, 1105, 1146, 1360
HspAI GCGC 1 cut(s) 935
Kpn2I TCCGGA 1 cut(s) 1318
Kzo9I GATC 3 cut(s) 24, 183, 915
LmnI GCTCC 3 cut(s) 155, 204, 401
Lsp1109I GCAGC 1 cut(s) 994
LweI GCATC 4 cut(s) 319, 398, 607, 867
MaeI CTAG 3 cut(s) 267, 651, 1086
MaeIII GTNAC 6 cut(s) 16, 103, 217, 304, 730, 1088
MalI GATC 3 cut(s) 26, 185, 917
MboI GATC 3 cut(s) 24, 183, 915
MboII GAAGA 4 cut(s) 74, 218, 256, 1397
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 201, 562
MluCI AATT 9 cut(s) 259, 456, 472, 569, 644, 834, 898, 905, 1120
MlyI GAGTC 5 cut(s) 13, 100, 458, 1254, 1361
MmeI TCCRAC 3 cut(s) 432, 1188, 1342
MnlI CCTC 7 cut(s) 182, 569, 667, 709, 934, 1050, 1197
Mph1103I ATGCAT 1 cut(s) 622
MroI TCCGGA 1 cut(s) 1318
MseI TTAA 2 cut(s) 258, 288
MslI CAYNNNNRTG 2 cut(s) 327, 693
MspCI CTTAAG 1 cut(s) 287
MspR9I CCNGG 8 cut(s) 194, 195, 334, 359, 1044, 1180, 1260, 1413
MunI CAATTG 1 cut(s) 834
MvaI CCWGG 1 cut(s) 1180
MvnI CGCG 1 cut(s) 937
MwoI GCNNNNNNNGC 8 cut(s) 147, 272, 674, 725, 941, 982, 1082, 1301
NciI CCSGG 7 cut(s) 194, 195, 334, 359, 1044, 1260, 1413
NcoI CCATGG 2 cut(s) 1101, 1356
NdeII GATC 3 cut(s) 24, 183, 915
NlaIII CATG 4 cut(s) 644, 1105, 1146, 1360
NlaIV GGNNCC 2 cut(s) 185, 200
NmuCI GTSAC 5 cut(s) 16, 103, 217, 730, 1088
NsiI ATGCAT 1 cut(s) 622
PfeI GAWTC 6 cut(s) 292, 362, 434, 584, 740, 957
PflMI CCANNNNNTGG 1 cut(s) 430
PinAI ACCGGT 1 cut(s) 611
PkrI GCNGC 2 cut(s) 984, 1410
PleI GAGTC 5 cut(s) 13, 100, 457, 1253, 1360
PpsI GAGTC 5 cut(s) 13, 100, 457, 1253, 1360
PsiI TTATAA 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 1178
PspGI CCWGG 1 cut(s) 1178
PspN4I GGNNCC 2 cut(s) 185, 200
PspPI GGNCC 2 cut(s) 367, 815
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 5 cut(s) 321, 606, 772, 966, 1232
RsaNI GTAC 5 cut(s) 320, 605, 771, 965, 1231
RseI CAYNNNNRTG 2 cut(s) 327, 693
Rsr2I CGGWCCG 1 cut(s) 367
RsrII CGGWCCG 1 cut(s) 367
SaqAI TTAA 2 cut(s) 258, 288
SatI GCNGC 2 cut(s) 983, 1409
Sau3AI GATC 3 cut(s) 24, 183, 915
Sau96I GGNCC 2 cut(s) 367, 815
SchI GAGTC 5 cut(s) 13, 100, 458, 1254, 1361
ScrFI CCNGG 8 cut(s) 194, 195, 334, 359, 1044, 1180, 1260, 1413
SduI GDGCHC 2 cut(s) 201, 562
SfaNI GCATC 4 cut(s) 319, 398, 607, 867
SfcI CTRYAG 2 cut(s) 588, 1017
SinI GGWCC 2 cut(s) 367, 815
SmaI CCCGGG 1 cut(s) 195
SmiMI CAYNNNNRTG 2 cut(s) 327, 693
SmlI CTYRAG 2 cut(s) 287, 1201
SmoI CTYRAG 2 cut(s) 287, 1201
SpeI ACTAGT 1 cut(s) 650
Sse9I AATT 9 cut(s) 259, 456, 472, 569, 644, 834, 898, 905, 1120
SsiI CCGC 1 cut(s) 1304
SspMI CTAG 3 cut(s) 267, 651, 1086
StyD4I CCNGG 8 cut(s) 192, 193, 332, 357, 1042, 1178, 1258, 1411
StyI CCWWGG 2 cut(s) 1101, 1356
TaaI ACNGT 2 cut(s) 310, 1316
TaqI TCGA 1 cut(s) 1350
TasI AATT 9 cut(s) 259, 456, 472, 569, 644, 834, 898, 905, 1120
TatI WGTACW 3 cut(s) 319, 964, 1230
TfiI GAWTC 6 cut(s) 292, 362, 434, 584, 740, 957
Tru1I TTAA 2 cut(s) 258, 288
Tru9I TTAA 2 cut(s) 258, 288
TseFI GTSAC 5 cut(s) 16, 103, 217, 730, 1088
TseI GCWGC 2 cut(s) 982, 1408
Tsp45I GTSAC 5 cut(s) 16, 103, 217, 730, 1088
TspDTI ATGAA 6 cut(s) 465, 657, 768, 949, 1026, 1251
TspMI CCCGGG 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 430
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 367, 815
XapI RAATTY 4 cut(s) 472, 644, 898, 1120
XmaI CCCGGG 1 cut(s) 193
XspI CTAG 3 cut(s) 267, 651, 1086
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.