Rroxscaffold_1G00040360

DTW

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012344
Physical Location & Seq
Forward (+)
58013396 .. 58016199
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040360.1

Sequence Viewer

Length: 1332 bp
ATGGTGACTCCTACTCAGGCCATTTCCAAGAGACCCATTTGCCCTTCCTGCTCCAAACCCATCCGTCTCTGCCTCTGCAATCGGATCCACAACCCGGGGCTCCACAACTCTGTAAGTGTGACCATTCTTCAACACAGCTTTGAGAAGAACCACCCTCTTAATTCAGCTAGGATCGCCAGGTTAGGGCTTAAGAATCTGAAAGTGGTTACTGTTTTTGATGTACATTTTGATGCCCGGTTCGTTATCCGGTTGCTCGACCCGGATTTGGAAACGGGTTTGGACCGGAATGGTTCAAAGGGTGCATCTTTTGATGGAGCTGTGGAAACTGGAGAGACCCAGAAGGTGGATTCTGGGTTTTGTGAGTCGGAAATTGGGGGTTTTGAAAATTCATCAAAACAGAGAAGGTGTAGTAGTGTGGTTGATTGTAATGAGCAATGTAGTTTTGGGGATGATATAGGGGGTATGAGTAGTGCTGAAAATCAATTAGGAAGTGTAGATTCTGCAGAAAATTGTAGCAAATCGACTGGTGATGCATTACTTGTAGAGCAAGAAGATGAATTCACTAGTGGAGAGTTCACTGATGGAAAGAGTGTGCTTGCTTTGGAGACTTGTCATAAGCATTTGGATGGACAATCCAATGTGGATGAGGCTTCAACTGTTACGACTTTGGATTCATTATCTGATAGAGATTTTAATTCGGTTGAAGGTGTCAAAGTTAGTAATGCTGGACCTGTTATAACTGCTACAATTGGCAAGAATGGTGTCATTACTTCTCTTACTCATACTTGGATGCCACAAACCCATCACAAGAATTCACAATTTGATATGATCTCAGACATTACAGAAGCGCGTGAGGCTCTGGCAAAGGGATTCGTTGTACAAAAGTTGCAAAAGCAGCCACCTAAAGGAAATGTAGACTTAGATGAAGCTGTAGAGTTTGAAGTAGAAGTTCCTCCGGGGTCTGTTCTCTTGTTTCCATCTGAAGAAGCAGTTAGTGCTAGTGACCTTGAAGCCCTGGATATCAAGGTCAAGAATCTGATTGTCTTGGATGGAACATGGTCAAAGGCAAAGAGAATGTATGTGGAAAACCCCTGGTTGAAGCTATTGCCACACTTGAGGTTGGATTTGGACAAGCTGAGCTTGTACACTGAAGTGAGAGTCCAGCCCAAGCCGGGATTCTTGTCCACCATTGAGAGCATTGTGTACGCACTAAAGGCGGTAGGGGACAGTCCGGAAGGGCTGGACAATCTCTTGGATGTTTTCGAGTCCATGGTTGGAGACCAGAGACGATGTAAAGAAGAGAGATTGAGCAATGTATCACCGCCCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

443

Amino Acids

48.4

Weight (kDa)

5.07

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 11 - 71 6.9e-09 DTW domain
DTW PF03942 262 - 428 8e-28 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54880
fragaria_vesca FvH4_3g22471
malus_domestica MD03G1204100.v1.1 MD11G1220900.v1.1
prunus_persica Prupe.4G211300_v2.0.a1
pyrus_communis pycom03g15470 pycom11g19490
rosa_chinensis RchiOBHm_Chr5g0039141
rosa_laevigata RLG00000033897
rosa_multiflora Rmu_sc0000533.1_g000008 Rmu_ssc0000410.1_g000018 Rmu_ssc0000410.1_g000044
rosa_roxburghii Rroxscaffold_1G00040360
rosa_rugosa Rorug05G0177000
rosa_samantha Rh5BG268300 Rh5CG301100 Rh5DG276100
rosa_wichuraiana Rw0G001970 Rw5G024630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 737
AccB7I CCANNNNNTGG 1 cut(s) 343
AccI GTMKAC 1 cut(s) 915
AccII CGCG 1 cut(s) 850
AccIII TCCGGA 1 cut(s) 1231
AciI CCGC 2 cut(s) 1217, 1322
AclWI GGATC 3 cut(s) 79, 92, 179
AcsI RAATTY 3 cut(s) 385, 557, 811
AcuI CTGAAG 2 cut(s) 1002, 1170
AfaI GTAC 4 cut(s) 222, 879, 1145, 1205
AfiI CCNNNNNNNGG 6 cut(s) 94, 183, 265, 343, 905, 1172
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 8 cut(s) 131, 294, 383, 654, 704, 941, 1010, 1099
AhlI ACTAGT 1 cut(s) 563
AjnI CCWGG 3 cut(s) 176, 1014, 1091
AjuI GAANNNNNNNTTGG 2 cut(s) 1160, 1192
AleI CACNNNNGTG 1 cut(s) 1151
AluBI AGCT 7 cut(s) 138, 167, 317, 929, 1102, 1135, 1140
AluI AGCT 7 cut(s) 138, 167, 317, 929, 1102, 1135, 1140
Alw26I GTCTC 6 cut(s) 25, 71, 326, 599, 1272, 1279
AlwI GGATC 3 cut(s) 79, 92, 179
Ama87I CYCGRG 1 cut(s) 94
Aor13HI TCCGGA 1 cut(s) 1231
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 895
ApoI RAATTY 3 cut(s) 385, 557, 811
AspLEI GCGC 1 cut(s) 850
AspS9I GGNCC 2 cut(s) 280, 728
AsuC2I CCSGG 7 cut(s) 95, 96, 235, 260, 957, 1173, 1327
AsuHPI GGTGA 3 cut(s) 16, 539, 1311
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 2 cut(s) 280, 728
BamHI GGATCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 907
BccI CCATC 7 cut(s) 68, 305, 575, 620, 810, 985, 1043
BciT130I CCWGG 3 cut(s) 178, 1016, 1093
BcnI CCSGG 7 cut(s) 95, 96, 235, 260, 957, 1173, 1327
BcoDI GTCTC 6 cut(s) 25, 71, 326, 599, 1272, 1279
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 3 cut(s) 168, 564, 999
BfmI CTRYAG 2 cut(s) 501, 930
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 896
BlpI GCTNAGC 1 cut(s) 1136
BlsI GCNGC 1 cut(s) 897
Bme18I GGWCC 2 cut(s) 280, 728
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 280, 728
BmiI GGNNCC 2 cut(s) 86, 101
BmsI GCATC 4 cut(s) 220, 311, 520, 780
BpmI CTGGAG 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 1136
BpuEI CTTGAG 1 cut(s) 1135
BpuMI CCSGG 7 cut(s) 95, 96, 235, 260, 957, 1173, 1327
BsaI GGTCTC 3 cut(s) 25, 326, 1272
BsaJI CCNNGG 7 cut(s) 94, 95, 956, 1014, 1091, 1269, 1325
BsaWI WCCGGW 3 cut(s) 246, 282, 1231
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 183, 265, 343, 905, 1172
Bse1I ACTGG 2 cut(s) 331, 529
Bse3DI GCAATG 2 cut(s) 440, 1318
BseAI TCCGGA 1 cut(s) 1231
BseBI CCWGG 3 cut(s) 178, 1016, 1093
BseDI CCNNGG 7 cut(s) 94, 95, 956, 1014, 1091, 1269, 1325
BseGI GGATG 7 cut(s) 60, 454, 631, 649, 795, 1054, 1261
BseLI CCNNNNNNNGG 6 cut(s) 94, 183, 265, 343, 905, 1172
BseMI GCAATG 2 cut(s) 440, 1318
BseMII CTCAG 3 cut(s) 29, 846, 1127
BseNI ACTGG 2 cut(s) 331, 529
BseXI GCAGC 1 cut(s) 907
Bsh1236I CGCG 1 cut(s) 850
BshFI GGCC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 9 cut(s) 95, 235, 247, 260, 283, 956, 1172, 1232, 1327
BslFI GGGAC 1 cut(s) 1238
BslI CCNNNNNNNGG 6 cut(s) 94, 183, 265, 343, 905, 1172
BsmAI GTCTC 6 cut(s) 25, 71, 326, 599, 1272, 1279
BsmBI CGTCTC 2 cut(s) 71, 1279
BsmFI GGGAC 1 cut(s) 1238
BsnI GGCC 1 cut(s) 20
Bso31I GGTCTC 3 cut(s) 25, 326, 1272
BsoBI CYCGRG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 1231
Bsp1407I TGTACA 3 cut(s) 220, 877, 1143
Bsp143I GATC 3 cut(s) 84, 171, 828
Bsp1720I GCTNAGC 1 cut(s) 1136
Bsp19I CCATGG 1 cut(s) 1269
BspACI CCGC 2 cut(s) 1217, 1322
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 3 cut(s) 28, 845, 1128
BspEI TCCGGA 1 cut(s) 1231
BspFNI CGCG 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 86, 101
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 3 cut(s) 79, 92, 179
BspTI CTTAAG 1 cut(s) 188
BspTNI GGTCTC 3 cut(s) 25, 326, 1272
BsrDI GCAATG 2 cut(s) 440, 1318
BsrGI TGTACA 3 cut(s) 220, 877, 1143
BsrI ACTGG 2 cut(s) 331, 529
BssECI CCNNGG 7 cut(s) 94, 95, 956, 1014, 1091, 1269, 1325
BssMI GATC 3 cut(s) 84, 171, 828
BssT1I CCWWGG 1 cut(s) 1269
Bst2UI CCWGG 3 cut(s) 178, 1016, 1093
Bst4CI ACNGT 3 cut(s) 211, 658, 1229
Bst6I CTCTTC 1 cut(s) 1293
BstAFI CTTAAG 1 cut(s) 188
BstAPI GCANNNNNTGC 1 cut(s) 995
BstAUI TGTACA 3 cut(s) 220, 877, 1143
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 4 cut(s) 15, 832, 919, 1136
BstDSI CCRYGG 1 cut(s) 1269
BstF5I GGATG 7 cut(s) 60, 454, 631, 649, 795, 1054, 1261
BstFNI CGCG 1 cut(s) 850
BstHHI GCGC 1 cut(s) 850
BstKTI GATC 3 cut(s) 87, 174, 831
BstMAI GTCTC 6 cut(s) 25, 71, 326, 599, 1272, 1279
BstMBI GATC 3 cut(s) 84, 171, 828
BstMWI GCNNNNNNNGC 6 cut(s) 48, 173, 854, 895, 995, 1214
BstNI CCWGG 3 cut(s) 178, 1016, 1093
BstSFI CTRYAG 2 cut(s) 501, 930
BstUI CGCG 1 cut(s) 850
BstV1I GCAGC 1 cut(s) 907
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 1269
BtsCI GGATG 7 cut(s) 60, 454, 631, 649, 795, 1054, 1261
BtsIMutI CAGTG 2 cut(s) 576, 1146
Cac8I GCNNGC 1 cut(s) 597
CfoI GCGC 1 cut(s) 850
Cfr13I GGNCC 2 cut(s) 280, 728
Cfr9I CCCGGG 1 cut(s) 94
Csp6I GTAC 4 cut(s) 221, 878, 1144, 1204
CviAII CATG 2 cut(s) 1056, 1270
CviQI GTAC 4 cut(s) 221, 878, 1144, 1204
DdeI CTNAG 4 cut(s) 15, 832, 919, 1136
DpnI GATC 3 cut(s) 86, 173, 830
DpnII GATC 3 cut(s) 84, 171, 828
Eam1104I CTCTTC 1 cut(s) 1293
EarI CTCTTC 1 cut(s) 1293
Eco130I CCWWGG 1 cut(s) 1269
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 3 cut(s) 25, 326, 1272
Eco32I GATATC 1 cut(s) 1021
Eco47I GGWCC 2 cut(s) 280, 728
Eco57I CTGAAG 2 cut(s) 1002, 1170
Eco88I CYCGRG 1 cut(s) 94
EcoRI GAATTC 2 cut(s) 557, 811
EcoRII CCWGG 3 cut(s) 176, 1014, 1091
EcoRV GATATC 1 cut(s) 1021
EcoT14I CCWWGG 1 cut(s) 1269
EcoT22I ATGCAT 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 1269
Esp3I CGTCTC 2 cut(s) 71, 1279
FaeI CATG 2 cut(s) 1059, 1273
FaiI YATR 9 cut(s) 455, 464, 615, 737, 783, 827, 1057, 1080, 1271
FalI AAGNNNNNCTT 2 cut(s) 1124, 1156
FaqI GGGAC 1 cut(s) 1238
FatI CATG 2 cut(s) 1055, 1269
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 1 cut(s) 896
FokI GGATG 7 cut(s) 47, 461, 638, 656, 802, 1061, 1268
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 896
FspBI CTAG 3 cut(s) 168, 564, 999
GlaI GCGC 1 cut(s) 849
GluI GCNGC 1 cut(s) 896
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 20
HapII CCGG 9 cut(s) 95, 235, 247, 260, 283, 956, 1172, 1232, 1327
HhaI GCGC 1 cut(s) 850
Hin1II CATG 2 cut(s) 1059, 1273
Hin6I GCGC 1 cut(s) 848
HinP1I GCGC 1 cut(s) 848
HpaII CCGG 9 cut(s) 95, 235, 247, 260, 283, 956, 1172, 1232, 1327
HphI GGTGA 3 cut(s) 16, 539, 1311
Hpy166II GTNNAC 5 cut(s) 576, 916, 1146, 1185, 1204
Hpy188I TCNGA 7 cut(s) 84, 198, 367, 682, 835, 982, 1038
Hpy188III TCNNGA 2 cut(s) 1030, 1232
Hpy8I GTNNAC 5 cut(s) 576, 916, 1146, 1185, 1204
HpyAV CCTTC 5 cut(s) 54, 334, 396, 698, 1229
HpyCH4III ACNGT 3 cut(s) 211, 658, 1229
HpyCH4V TGCA 5 cut(s) 78, 302, 503, 533, 889
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 173, 854, 895, 995, 1214
HpyF3I CTNAG 4 cut(s) 15, 832, 919, 1136
Hsp92II CATG 2 cut(s) 1059, 1273
HspAI GCGC 1 cut(s) 848
Kpn2I TCCGGA 1 cut(s) 1231
Kzo9I GATC 3 cut(s) 84, 171, 828
LmnI GCTCC 3 cut(s) 56, 105, 314
Lsp1109I GCAGC 1 cut(s) 907
LweI GCATC 4 cut(s) 220, 311, 520, 780
MaeI CTAG 3 cut(s) 168, 564, 999
MaeIII GTNAC 5 cut(s) 4, 118, 205, 658, 1001
MalI GATC 3 cut(s) 86, 173, 830
MboI GATC 3 cut(s) 84, 171, 828
MboII GAAGA 5 cut(s) 119, 157, 563, 995, 1310
MfeI CAATTG 1 cut(s) 747
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 102
MlyI GAGTC 3 cut(s) 371, 1167, 1274
MmeI TCCRAC 3 cut(s) 345, 1101, 1255
MnlI CCTC 6 cut(s) 83, 165, 640, 847, 963, 1110
Mph1103I ATGCAT 1 cut(s) 535
MroI TCCGGA 1 cut(s) 1231
MseI TTAA 3 cut(s) 159, 189, 693
MslI CAYNNNNRTG 3 cut(s) 228, 624, 1151
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 9 cut(s) 95, 235, 247, 260, 283, 956, 1172, 1232, 1327
MunI CAATTG 1 cut(s) 747
MvaI CCWGG 3 cut(s) 178, 1016, 1093
MvnI CGCG 1 cut(s) 850
MwoI GCNNNNNNNGC 6 cut(s) 48, 173, 854, 895, 995, 1214
NciI CCSGG 7 cut(s) 95, 96, 235, 260, 957, 1173, 1327
NcoI CCATGG 1 cut(s) 1269
NdeII GATC 3 cut(s) 84, 171, 828
NlaIII CATG 2 cut(s) 1059, 1273
NlaIV GGNNCC 2 cut(s) 86, 101
NmuCI GTSAC 3 cut(s) 4, 118, 1001
NsiI ATGCAT 1 cut(s) 535
OliI CACNNNNGTG 1 cut(s) 1151
PfeI GAWTC 7 cut(s) 193, 347, 497, 671, 870, 1033, 1176
PflMI CCANNNNNTGG 1 cut(s) 343
PkrI GCNGC 1 cut(s) 897
PleI GAGTC 3 cut(s) 370, 1166, 1273
PpsI GAGTC 3 cut(s) 370, 1166, 1273
PsiI TTATAA 1 cut(s) 737
Psp6I CCWGG 3 cut(s) 176, 1014, 1091
PspGI CCWGG 3 cut(s) 176, 1014, 1091
PspN4I GGNNCC 2 cut(s) 86, 101
PspPI GGNCC 2 cut(s) 280, 728
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 4 cut(s) 222, 879, 1145, 1205
RsaNI GTAC 4 cut(s) 221, 878, 1144, 1204
RseI CAYNNNNRTG 3 cut(s) 228, 624, 1151
SaqAI TTAA 3 cut(s) 159, 189, 693
SatI GCNGC 1 cut(s) 896
Sau3AI GATC 3 cut(s) 84, 171, 828
Sau96I GGNCC 2 cut(s) 280, 728
SchI GAGTC 3 cut(s) 371, 1167, 1274
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 4 cut(s) 220, 311, 520, 780
SfcI CTRYAG 2 cut(s) 501, 930
SinI GGWCC 2 cut(s) 280, 728
SmaI CCCGGG 1 cut(s) 96
SmiMI CAYNNNNRTG 3 cut(s) 228, 624, 1151
SmlI CTYRAG 2 cut(s) 188, 1114
SmoI CTYRAG 2 cut(s) 188, 1114
SpeI ACTAGT 1 cut(s) 563
SsiI CCGC 2 cut(s) 1217, 1322
SspMI CTAG 3 cut(s) 168, 564, 999
StyI CCWWGG 1 cut(s) 1269
TaaI ACNGT 3 cut(s) 211, 658, 1229
TaqI TCGA 3 cut(s) 255, 521, 1263
TatI WGTACW 3 cut(s) 220, 877, 1143
TfiI GAWTC 7 cut(s) 193, 347, 497, 671, 870, 1033, 1176
Tru1I TTAA 3 cut(s) 159, 189, 693
Tru9I TTAA 3 cut(s) 159, 189, 693
TscAI CASTG 2 cut(s) 583, 1153
TseFI GTSAC 3 cut(s) 4, 118, 1001
TseI GCWGC 1 cut(s) 895
Tsp45I GTSAC 3 cut(s) 4, 118, 1001
TspDTI ATGAA 4 cut(s) 378, 570, 663, 939
TspGWI ACGGA 1 cut(s) 53
TspMI CCCGGG 1 cut(s) 94
TspRI CASTG 2 cut(s) 583, 1153
Van91I CCANNNNNTGG 1 cut(s) 343
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 280, 728
XapI RAATTY 3 cut(s) 385, 557, 811
XmaI CCCGGG 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 915
XspI CTAG 3 cut(s) 168, 564, 999
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.