RLG00000019259

Permuted single zf-CXXC unit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014813
Physical Location & Seq
Reverse (-)
49193733 .. 49194298
566 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019259

Sequence Viewer

Length: 474 bp
ATGGACAGGGAACACCAATTATTTGCAAGACTTGCCTTGCCAGGGCCCGAGGAGAAAAGTATAGTGAGTGCAACTAAAGACAGAAATACCTATCAAAACCCTGGTGAGATCAACAATGGAATGCCTTTAGCTCTCCCTCTCCTTCATCCTTATAGAATGGAACAGTCGGAAGGAAACCAGCAACTTGAAGCAAGCCAACAATCAAAACCAAAGTCTGCACTAGGTTATTGTGAACCTATTATTGAAGAACTAGCAACACTAGAGCTAGAGTACACACAGATAGTAGAGCACATTGAGGACTTCTATGAGGACCCAGATGAAATTCCTACTATTAAACTCAACATGGAACAGTTCACTCAGAACTGGCAAGTTTATATGCAACAAAACATGGAACTTCAAGAAAGAGAAATGTCAAAATCTTTAGAGCAACTAATTAACACCAGATGCTACATTTCTTCCCATGCCAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

158

Amino Acids

18.25

Weight (kDa)

4.65

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 321
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 3 cut(s) 188, 245, 398
AjnI CCWGG 2 cut(s) 40, 100
AluBI AGCT 3 cut(s) 131, 265, 470
AluI AGCT 3 cut(s) 131, 265, 470
Alw21I GWGCWC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 44
ApaI GGGCCC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 321
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspS9I GGNCC 3 cut(s) 44, 45, 310
AsuHPI GGTGA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 291
BciT130I CCWGG 2 cut(s) 42, 102
BfaI CTAG 4 cut(s) 221, 251, 260, 266
Bme1390I CCNGG 2 cut(s) 42, 102
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 3 cut(s) 44, 45, 310
BmiI GGNNCC 2 cut(s) 46, 312
BmrFI CCNGG 2 cut(s) 42, 102
BmsI GCATC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 41, 48, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 368
BseBI CCWGG 2 cut(s) 42, 102
BseDI CCNNGG 3 cut(s) 41, 48, 100
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 48
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 42
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 47
Bsp120I GGGCCC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 48, 291
Bsp143I GATC 1 cut(s) 108
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 46, 312
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 41, 48, 100
BssMI GATC 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 42, 102
Bst4CI ACNGT 2 cut(s) 165, 351
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 2 cut(s) 42, 102
BstSCI CCNGG 2 cut(s) 40, 100
BstSLI GKGCMC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 193
Cfr13I GGNCC 3 cut(s) 44, 45, 310
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 343, 388, 461
CviJI RGCY 5 cut(s) 46, 131, 195, 265, 470
CviKI_1 RGCY 5 cut(s) 46, 131, 195, 265, 470
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 47
EcoO109I RGGNCCY 2 cut(s) 44, 310
EcoRII CCWGG 2 cut(s) 40, 100
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 3 cut(s) 346, 391, 464
FaiI YATR 8 cut(s) 62, 153, 306, 344, 375, 377, 389, 462
FatI CATG 3 cut(s) 342, 387, 460
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 48
FspBI CTAG 4 cut(s) 221, 251, 260, 266
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 3 cut(s) 346, 391, 464
HindIII AAGCTT 1 cut(s) 468
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 3 cut(s) 233, 273, 354
Hpy188I TCNGA 2 cut(s) 169, 360
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 3 cut(s) 233, 273, 354
HpyAV CCTTC 2 cut(s) 152, 164
HpyCH4III ACNGT 2 cut(s) 165, 351
HpyCH4V TGCA 4 cut(s) 26, 71, 218, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 3 cut(s) 346, 391, 464
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 8 cut(s) 27, 54, 87, 114, 191, 327, 349, 454
LweI GCATC 1 cut(s) 434
MaeI CTAG 4 cut(s) 221, 251, 260, 266
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 2 cut(s) 257, 447
MhlI GDGCHC 2 cut(s) 48, 291
MluCI AATT 3 cut(s) 17, 321, 432
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 4 cut(s) 43, 147, 289, 301
MseI TTAA 3 cut(s) 333, 435, 472
MspR9I CCNGG 2 cut(s) 42, 102
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 2 cut(s) 42, 102
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 1 cut(s) 108
NlaIII CATG 3 cut(s) 346, 391, 464
NlaIV GGNNCC 2 cut(s) 46, 312
PctI GAATGC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 40, 100
PspGI CCWGG 2 cut(s) 40, 100
PspN4I GGNNCC 2 cut(s) 46, 312
PspOMI GGGCCC 1 cut(s) 44
PspPI GGNCC 3 cut(s) 44, 45, 310
PspPPI RGGWCCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 333, 435, 472
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 3 cut(s) 44, 45, 310
ScrFI CCNGG 2 cut(s) 42, 102
SduI GDGCHC 2 cut(s) 48, 291
SetI ASST 6 cut(s) 92, 133, 226, 238, 267, 472
SfaNI GCATC 1 cut(s) 434
SinI GGWCC 1 cut(s) 310
Sse9I AATT 3 cut(s) 17, 321, 432
SspMI CTAG 4 cut(s) 221, 251, 260, 266
StyD4I CCNGG 2 cut(s) 40, 100
TaaI ACNGT 2 cut(s) 165, 351
TasI AATT 3 cut(s) 17, 321, 432
TatI WGTACW 1 cut(s) 270
Tru1I TTAA 3 cut(s) 333, 435, 472
Tru9I TTAA 3 cut(s) 333, 435, 472
TspDTI ATGAA 2 cut(s) 134, 333
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 1 cut(s) 321
XspI CTAG 4 cut(s) 221, 251, 260, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.