Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009332

Physical Location & Seq

Genomic Coordinates Forward (+)

35450658 .. 35451930

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1299300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATCTGGTTATTTGTTTGCGGACTCAGTGATTTCTGTTTGAAACAACATAATGGCGAGCTCAAAGGTGGTGCAAAAGCATCTAGTGCTGGAAGACCATGGATTTGTGCATGCCTAATACATGGTTTTAAGGGCCAAAGTGAAGCTTGCGAGTTCGAATCAAAATGGAAAACTTTATCAAGGCGTTTGCCTCGGAAAAGAAAGAAACACGACGAGGAGGAGCGAGCAAATGATTTGTCACTTCCATTGCTACAACACAGGCAAGCAGCTCTGGATAGAGTTAAAGGTATACTTGATTGCACCCACTTAGAAATCGACTGGAAACTGGACCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

8.81

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43210
fragaria_vesca	FvH4_7g01930
malus_domestica	MD02G1299300.v1.1
prunus_persica	Prupe.2G025000_v2.0.a1 Prupe.2G025000_v2.0.a1
pyrus_communis	pycom02g25170
rosa_chinensis	RchiOBHm_Chr1g0318641 RchiOBHm_Chr1g0318771
rosa_laevigata	RLG00000030521
rosa_multiflora	Rmu_sc0001304.1_g000040 Rmu_sc0002545.1_g000016
rosa_roxburghii	Rroxscaffold_4G00329010
rosa_rugosa	Rorug01G0022400 Rorug01G0022400
rosa_samantha	Rh1AG035500 Rh1AG238000 Rh1BG031100 Rh1CG034400 Rh1CG222400 Rh1DG036000 Rh5DG414300
rosa_wichuraiana	Rw1G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	3 cut(s)	61, 146, 269
AluI	AGCT	3 cut(s)	61, 146, 269
Alw21I	GWGCWC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	266
ArsI	GACNNNNNNTTYG	4 cut(s)	87, 119, 221, 253
AspS9I	GGNCC	2 cut(s)	133, 328
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	133, 328
BmiI	GGNNCC	1 cut(s)	330
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	98, 191
Bse1I	ACTGG	2 cut(s)	323, 330
Bse3DI	GCAATG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	98, 191
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	323, 330
BseRI	GAGGAG	2 cut(s)	230, 233
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	98
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	330
BspT104I	TTCGAA	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	323, 330
BssECI	CCNNGG	2 cut(s)	98, 191
BssMI	GATC	1 cut(s)	3
BssNAI	GTATAC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	98
Bst1107I	GTATAC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	5 cut(s)	59, 112, 148, 225, 264
BstDEI	CTNAG	2 cut(s)	26, 307
BstDSI	CCRYGG	1 cut(s)	98
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	5 cut(s)	59, 112, 148, 225, 264
Cfr13I	GGNCC	2 cut(s)	133, 328
CviAII	CATG	3 cut(s)	99, 111, 122
CviJI	RGCY	4 cut(s)	61, 135, 146, 269
CviKI_1	RGCY	4 cut(s)	61, 135, 146, 269
DdeI	CTNAG	2 cut(s)	26, 307
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	3 cut(s)	102, 114, 125
FaiI	YATR	5 cut(s)	51, 100, 112, 123, 290
FalI	AAGNNNNNCTT	4 cut(s)	130, 162, 276, 308
FatI	CATG	3 cut(s)	98, 110, 121
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	135
Hin1II	CATG	3 cut(s)	102, 114, 125
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	2 cut(s)	24, 158
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	74, 110, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	26, 307
Hsp92II	CATG	3 cut(s)	102, 114, 125
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	75, 244, 257, 304, 311
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	3 cut(s)	201, 208, 211
MseI	TTAA	2 cut(s)	129, 282
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	3 cut(s)	102, 114, 125
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	237
NspI	RCATGY	1 cut(s)	114
NspV	TTCGAA	1 cut(s)	156
PaeI	GCATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	133, 328
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	129, 282
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	133, 328
SchI	GAGTC	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	5 cut(s)	63, 70, 148, 271, 289
SfaNI	GCATC	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	328
SphI	GCATGC	1 cut(s)	114
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	98
TaqI	TCGA	2 cut(s)	156, 315
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	129, 282
Tru9I	TTAA	2 cut(s)	129, 282
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	237
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	328
XceI	RCATGY	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.