Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009332

Physical Location & Seq

Genomic Coordinates Forward (+)

23210805 .. 23212978

Gene Structure 2174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCACCGGATAAAACATACGAGCTGCCAAACGAGGCCTATGGCATATTTAAATGGAACAGTTCAAAAACGTTCAGACTTTTAGGCCGATCGAGCAGAGAATTGATCTGCTCACCTGAAATTATGCGACGGCTCTCGAGCACATTCCCTTCCGTCAAGTTCCAGAACCCTAACCCCCCAAAATTATCATCATCCTCCTCGCTCTCCCTGTCGATCAAATCAGAAGCATCCTCGAGCTCTCCGTCCAAATCAAAATCAAAACCAAAATCTTGGTCTGTGTATCTCATTCTTTCCACTAATTCCCCAATCAAAACCTACGTCGGCGTCACCACCGATTTCTCTCGCCGTTTGAAACAACATAATGGCGAGCTCAAAGGTGGTGCAAAAGCATCTAGTGCTGGAAGACCATGGATTTGTGCTTGCCTAATACATGGTTTTAAGGGCCAAAGTGAAGCTTGCGAGTTCGAATCAAAATGGAAAACTTTATCAAGGCGTTTGCCTCGGAAAAGAAAGAAACACGACGAGGAGGAGCAAGCAAATGATTTGTCACCTCCATTGCTACAACACAGGCAAGCAGCTCTGGATAGAGTTAAAGGTATACTTGATTGCACCAACTTAGAAATTGACTGGAAACTGGACCCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

216

Amino Acids

24.16

Weight (kDa)

9.77

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43210
fragaria_vesca	FvH4_7g01930
malus_domestica	MD02G1299300.v1.1
prunus_persica	Prupe.2G025000_v2.0.a1 Prupe.2G025000_v2.0.a1
pyrus_communis	pycom02g25170
rosa_chinensis	RchiOBHm_Chr1g0318641 RchiOBHm_Chr1g0318771
rosa_laevigata	RLG00000030521
rosa_multiflora	Rmu_sc0001304.1_g000040 Rmu_sc0002545.1_g000016
rosa_roxburghii	Rroxscaffold_4G00329010
rosa_rugosa	Rorug01G0022400 Rorug01G0022400
rosa_samantha	Rh1AG035500 Rh1AG238000 Rh1BG031100 Rh1CG034400 Rh1CG222400 Rh1DG036000 Rh5DG414300
rosa_wichuraiana	Rw1G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	598
AclI	AACGTT	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	66, 352
AluBI	AGCT	5 cut(s)	25, 237, 370, 455, 578
AluI	AGCT	5 cut(s)	25, 237, 370, 455, 578
Alw21I	GWGCWC	3 cut(s)	143, 239, 372
Ama87I	CYCGRG	2 cut(s)	136, 232
AoxI	GGCC	3 cut(s)	36, 85, 442
ApeKI	GCWGC	2 cut(s)	25, 575
ArsI	GACNNNNNNTTYG	8 cut(s)	257, 289, 303, 335, 396, 428, 530, 562
AspS9I	GGNCC	2 cut(s)	442, 637
AsuHPI	GGTGA	3 cut(s)	105, 319, 540
AsuII	TTCGAA	1 cut(s)	465
AvaI	CYCGRG	2 cut(s)	136, 232
AvaII	GGWCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	239, 372
BbsI	GAAGAC	1 cut(s)	409
Bbv12I	GWGCWC	3 cut(s)	143, 239, 372
BbvI	GCAGC	2 cut(s)	12, 587
BceAI	ACGGC	2 cut(s)	146, 330
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	2 cut(s)	26, 576
BlsI	GCNGC	2 cut(s)	27, 577
Bme18I	GGWCC	1 cut(s)	637
BmeT110I	CYCGRG	2 cut(s)	136, 232
BmgT120I	GGNCC	2 cut(s)	442, 637
BmiI	GGNNCC	2 cut(s)	6, 639
BmsI	GCATC	2 cut(s)	236, 398
BpiI	GAAGAC	1 cut(s)	409
Bpu14I	TTCGAA	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	407, 500
BsaWI	WCCGGW	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	632, 639
Bse3DI	GCAATG	1 cut(s)	554
BseDI	CCNNGG	2 cut(s)	407, 500
BseGI	GGATG	2 cut(s)	191, 227
BseMI	GCAATG	1 cut(s)	554
BseNI	ACTGG	2 cut(s)	632, 639
BseRI	GAGGAG	3 cut(s)	187, 539, 542
BseXI	GCAGC	2 cut(s)	12, 587
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	38, 87, 444
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	92
BsiHKAI	GWGCWC	3 cut(s)	143, 239, 372
BsiHKCI	CYCGRG	2 cut(s)	136, 232
BsiSI	CCGG	1 cut(s)	8
BsnI	GGCC	3 cut(s)	38, 87, 444
BsoBI	CYCGRG	2 cut(s)	136, 232
Bsp119I	TTCGAA	1 cut(s)	465
Bsp1286I	GDGCHC	3 cut(s)	143, 239, 372
Bsp143I	GATC	3 cut(s)	89, 105, 213
Bsp19I	CCATGG	1 cut(s)	407
BspANI	GGCC	3 cut(s)	38, 87, 444
BspLI	GGNNCC	2 cut(s)	6, 639
BspT104I	TTCGAA	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	632, 639
BssECI	CCNNGG	2 cut(s)	407, 500
BssMI	GATC	3 cut(s)	89, 105, 213
BssNAI	GTATAC	1 cut(s)	599
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	407
Bst1107I	GTATAC	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	5 cut(s)	368, 421, 457, 534, 573
BstDEI	CTNAG	1 cut(s)	616
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	191, 227
BstKTI	GATC	3 cut(s)	92, 108, 216
BstMBI	GATC	3 cut(s)	89, 105, 213
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 395
BstV1I	GCAGC	2 cut(s)	12, 587
BstV2I	GAAGAC	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstZ17I	GTATAC	1 cut(s)	599
BsuRI	GGCC	3 cut(s)	38, 87, 444
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	191, 227
Cac8I	GCNNGC	5 cut(s)	368, 421, 457, 534, 573
Cfr13I	GGNCC	2 cut(s)	442, 637
CseI	GACGC	1 cut(s)	313
CviAII	CATG	2 cut(s)	408, 431
CviJI	RGCY	9 cut(s)	25, 38, 87, 133, 237, 370, 444, 455, 578
CviKI_1	RGCY	9 cut(s)	25, 38, 87, 133, 237, 370, 444, 455, 578
DdeI	CTNAG	1 cut(s)	616
DpnI	GATC	3 cut(s)	91, 107, 215
DpnII	GATC	3 cut(s)	89, 105, 213
DraI	TTTAAA	1 cut(s)	52
Ecl136II	GAGCTC	2 cut(s)	237, 370
Eco130I	CCWWGG	1 cut(s)	407
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	2 cut(s)	239, 372
Eco47I	GGWCC	1 cut(s)	637
Eco53kI	GAGCTC	2 cut(s)	237, 370
Eco88I	CYCGRG	2 cut(s)	136, 232
EcoICRI	GAGCTC	2 cut(s)	237, 370
EcoT14I	CCWWGG	1 cut(s)	407
EcoT38I	GRGCYC	2 cut(s)	239, 372
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	2 cut(s)	411, 434
FaiI	YATR	8 cut(s)	19, 42, 47, 125, 360, 409, 432, 599
FalI	AAGNNNNNCTT	4 cut(s)	439, 471, 585, 617
FatI	CATG	2 cut(s)	407, 430
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	2 cut(s)	26, 576
FokI	GGATG	2 cut(s)	178, 214
FriOI	GRGCYC	2 cut(s)	239, 372
Fsp4HI	GCNGC	2 cut(s)	26, 576
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	2 cut(s)	26, 576
HaeIII	GGCC	3 cut(s)	38, 87, 444
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	411, 434
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	105, 319, 540
Hpy166II	GTNNAC	1 cut(s)	599
Hpy188I	TCNGA	3 cut(s)	77, 223, 504
Hpy188III	TCNNGA	3 cut(s)	136, 163, 581
Hpy8I	GTNNAC	1 cut(s)	599
Hpy99I	CGWCG	3 cut(s)	132, 323, 524
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	71, 318
HpyCH4V	TGCA	2 cut(s)	383, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 395
HpyF3I	CTNAG	1 cut(s)	616
HpySE526I	ACGT	2 cut(s)	71, 318
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	411, 434
Kzo9I	GATC	3 cut(s)	89, 105, 213
LmnI	GCTCC	1 cut(s)	529
LpnPI	CCDG	9 cut(s)	21, 129, 176, 221, 384, 553, 566, 613, 620
Lsp1109I	GCAGC	2 cut(s)	12, 587
LweI	GCATC	2 cut(s)	236, 398
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	71, 318
MaeIII	GTNAC	2 cut(s)	325, 546
MalI	GATC	3 cut(s)	91, 107, 215
MboI	GATC	3 cut(s)	89, 105, 213
MboII	GAAGA	1 cut(s)	414
MhlI	GDGCHC	3 cut(s)	143, 239, 372
MluCI	AATT	5 cut(s)	101, 120, 182, 298, 621
MnlI	CCTC	8 cut(s)	28, 205, 208, 241, 510, 517, 520, 561
MseI	TTAA	3 cut(s)	51, 438, 591
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	93, 395
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	3 cut(s)	89, 105, 213
NlaIII	CATG	2 cut(s)	411, 434
NlaIV	GGNNCC	2 cut(s)	6, 639
NmuCI	GTSAC	2 cut(s)	325, 546
NspV	TTCGAA	1 cut(s)	465
PaeR7I	CTCGAG	2 cut(s)	136, 232
PceI	AGGCCT	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	27, 577
Ple19I	CGATCG	1 cut(s)	92
Psp124BI	GAGCTC	2 cut(s)	239, 372
Psp1406I	AACGTT	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	6, 639
PspPI	GGNCC	2 cut(s)	442, 637
PspXI	VCTCGAGB	1 cut(s)	232
PvuI	CGATCG	1 cut(s)	92
SacI	GAGCTC	2 cut(s)	239, 372
SaqAI	TTAA	3 cut(s)	51, 438, 591
SatI	GCNGC	2 cut(s)	26, 576
Sau3AI	GATC	3 cut(s)	89, 105, 213
Sau96I	GGNCC	2 cut(s)	442, 637
SduI	GDGCHC	3 cut(s)	143, 239, 372
SfaNI	GCATC	2 cut(s)	236, 398
Sfr274I	CTCGAG	2 cut(s)	136, 232
SfuI	TTCGAA	1 cut(s)	465
SinI	GGWCC	1 cut(s)	637
SlaI	CTCGAG	2 cut(s)	136, 232
SmiI	ATTTAAAT	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	136, 232
SmoI	CTYRAG	2 cut(s)	136, 232
Sse9I	AATT	5 cut(s)	101, 120, 182, 298, 621
SseBI	AGGCCT	1 cut(s)	38
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	2 cut(s)	239, 372
StuI	AGGCCT	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	407
SwaI	ATTTAAAT	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	2 cut(s)	74, 321
TaqI	TCGA	5 cut(s)	92, 137, 212, 233, 465
TasI	AATT	5 cut(s)	101, 120, 182, 298, 621
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	51, 438, 591
Tru9I	TTAA	3 cut(s)	51, 438, 591
TseFI	GTSAC	2 cut(s)	325, 546
TseI	GCWGC	2 cut(s)	25, 575
Tsp45I	GTSAC	2 cut(s)	325, 546
TspGWI	ACGGA	2 cut(s)	142, 231
VpaK11BI	GGWCC	1 cut(s)	637
XhoI	CTCGAG	2 cut(s)	136, 232
XmiI	GTMKAC	1 cut(s)	598
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.